BAC Information

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BAC

Clone NameB6Ng01-060P18
Chromosome9 (Build37)
Map Location 28,431,439 - 28,546,106
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneLOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060P18.bB6Ng01-060P18.g
ACCDH881799DH881800
length1,0351,013
definitionDH881799|Mus musculus domesticus DNA, BAC clone: B6Ng01-060P18, 5' end.DH881800|Mus musculus domesticus DNA, BAC clone: B6Ng01-060P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,431,439 - 28,432,479)(28,545,021 - 28,546,106)
sequence
gaattcatcacttctctgtcacggtttacttaggctgtttcagttgcagt
gactagggtgttaatgctaatttaccatgcaggtcaatttgggaaaagaa
tcccttttataggacaaagtccttgaaatagaagccttgagtccttagct
atgagtcttctagaatcttggtagctatttccaataactttccacagatg
cagcacacatagctcgtgtatatgcccttaacttacagggtacatataga
catcaaatgccaacaaatttggtgagagactctctttctggcctcagtcc
aagttaggtacacaatgtgaaaagtgaacatagcaaagaaaagaatttgt
ggtaggataggagatccagggagattgttgcacctttacagtctcaggtt
ctcttcagtgttatgagatatttttatactttcaaattaattaaaatatg
atatactttaggtcacaggaaagtagcctctatttatactgataaagaac
attcatttttgcaaaaatacttagtgctctttgctggggaagatattcac
cttgctgataaatgggatggtttcccaccaaacccttcctggaaactgag
aaaggtgattgtaatttagagcaattacggcaaactattgcacctgtaga
acaagaggccattatcccggaatcttagatggattaataaatgaatcggc
aaataaagcccatgatgaattacgaagcacgatatcataataattttatg
ataaagcatctctctgtatgatattacatttcagaataaaatagtaatgg
gcccctcaacatcttaaaggaactcctcagtctttcgagatagagggcag
ggaaaaaggaggagagaggggggaagatggagggaaaagacatgcctttt
tattttaacaggaagagacattttgggagtatagtggtttggaggcaaga
cacacttttgtttatgctgcacaatgctaccggaaatgatatagcttcac
atcgaatcatgggatggtactttagcgtattgggc
gaattcacaaacagaagccggcttttcagaaacacacatctcagctgagc
ctcctgcacagatgtcagatttctgcagaagcctcccggaggctcagaga
gcctacaatggactatttttagttctgataattaatattggaggagaaag
ggaggaggatgaaaatgtagctccagcaaaaaaggcaattaccatctatc
ccatatattgtcacctatgagatgtgttggtttcaaagaaataataaaga
gaaatgcgcatgaacccattgctttctgtatcacacctcccatgaagtgg
atgtttaattcttccctttctgaattctggaaatagcttggtctcataag
ttaacacttgcagctagggctgtgccagcctgcattttactatgacaaag
actgtgtctgtttcccaatgttgaaaaataagagctcgcttctctcacac
attcccagtgaattgggatcaacaactgtcaaaaagaaagccatggtcag
ggtcctcccattcctcctaactggtcccagagtctcattttaaaccattc
ttccaatcccttaccacttcactcaaatttgtagttcttatgcagatctc
tccattgcccgtcaaatcccttaagaaaagatacttttgtacctattaat
gaaaacccagtccatgatgattcataaaacaacatgacgcctctgttgcc
aggaaactctgggaagggtagtaggaaccaccatagtgccagcaaatgtc
tgtgcagcaagcaccttgctagggctagtctacattagtgctgaagctta
ggagagtggagagctgctacaaggagtgaccagccacagtgaggtggttt
atcaagtgaaggtactttgctgcctacaccgatgacttgagtttgattct
cagaacctacgaggtagaaggaaaagccaaatccatttctgttagtgtca
ctttgagcaaacacatgttgacacctgtgtctggagcatcacacaaggat
tacacccaacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28431439_28432479
seq2: B6Ng01-060P18.b_47_1081

seq1  GAATTCATCACTTCTCTGTCACGGTTTACTTAGGCTGTTTCAGTTGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTTCTCTGTCACGGTTTACTTAGGCTGTTTCAGTTGCAGT  50

seq1  GACTAGGGTGTTAATGCTAATTTACCATGCAGGTCAATTTGGGAAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGGTGTTAATGCTAATTTACCATGCAGGTCAATTTGGGAAAAGAA  100

seq1  TCCCTTTTATAGGACAAAGTCCTTGAAATAGAAGCCTTGAGTCCTTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTATAGGACAAAGTCCTTGAAATAGAAGCCTTGAGTCCTTAGCT  150

seq1  ATGAGTCTTCTAGAATCTTGGTAGCTATTTCCAATAACTTTCCACAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCTTCTAGAATCTTGGTAGCTATTTCCAATAACTTTCCACAGATG  200

seq1  CAGCACACATAGCTCGTGTATATGCCCTTAACTTACAGGGTACATATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACATAGCTCGTGTATATGCCCTTAACTTACAGGGTACATATAGA  250

seq1  CATCAAATGCCAACAAATTTGGTGAGAGACTCTCTTTCTGGCCTCAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATGCCAACAAATTTGGTGAGAGACTCTCTTTCTGGCCTCAGTCC  300

seq1  AAGTTAGGTACACAATGTGAAAAGTGAACATAGCAAAGAAAAGAATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGGTACACAATGTGAAAAGTGAACATAGCAAAGAAAAGAATTTGT  350

seq1  GGTAGGATAGGAGATCCAGGGAGATTGTTGCACCTTTACAGTCTCAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGATAGGAGATCCAGGGAGATTGTTGCACCTTTACAGTCTCAGGTT  400

seq1  CTCTTCAGTGTTATGAGATATTTTTATACTTTCAAATTAATTAAAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGTGTTATGAGATATTTTTATACTTTCAAATTAATTAAAATATG  450

seq1  ATATACTTTAGGTCACAGGAAAGTAGCCTCTATTTATACTGATAAAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTAGGTCACAGGAAAGTAGCCTCTATTTATACTGATAAAGAAC  500

seq1  ATTCATTTTTGCAAAAATACTTAGTGCTCTTTGCTGGGGAAGATATTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTGCAAAAATACTTAGTGCTCTTTGCTGGGGAAGATATTCAC  550

seq1  CTTGCTGATAAATGGGATGGTTTCCCACCAAACCCTTCCTGGAAACTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGATAAATGGGATGGTTTCCCACCAAACCCTTCCTGGAAACTGAG  600

seq1  AAAGGTGATTGTAATTTAGAGCAATTACGGCAAACTATTGCACCTGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGATTGTAATTTAGAGCAATTACGGCAAACTATTGCACCTGTAGA  650

seq1  ACAAGAGGCCATTATCCCGGAATCTTAGATGGATTAATAAATGAATCGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGCCATTATCCCGGAATCTTAGATGGATTAATAAATGAATCGGC  700

seq1  AAATAAAGCCCATGATGAATTACGAAGCACGATATCATAATAATTTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCCCATGATGAATTACGAAGCACGATATCATAATAATTTTATG  750

seq1  ATAAAGCATCTCTCTGTATGATATTACATTTCAGAATAAAATAGTAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATCTCTCTGTATGATATTACATTTCAGAATAAAATAGTAATGG  800

seq1  GCCCCTCAACATCTTAAAGGAACTCCTCAGTCTTTCGAGATAGAGGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCAACATCTTAAAGGAACTCCTCAGTCTTTCGAGATAGAGGGCAG  850

seq1  GGAAAAAGGAGGAGAGAGGGGGGAAGATGGAGGGAAAAGACATGCCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGGAGGAGAGAGGGGGGAAGATGGAGGGAAAAGACATGCCTTTT  900

seq1  TATTTTAACAGGAGGAGGACATGTTGGAAGTATAGTGGCTTGGGAGGCAA  950
      ||||||||||||| || ||||| |||| |||||||||| || |||||| |
seq2  TATTTTAACAGGAAGA-GACATTTTGGGAGTATAGTGG-TTTGGAGGC-A  947

seq1  AGACACACTTTGTTTAATGCTGCACAATGCTACCGGGAAATGATATAGC-  999
      |||||||||||  || |||||||||||||||||| |||||||||||||| 
seq2  AGACACACTTTTGTTTATGCTGCACAATGCTACC-GGAAATGATATAGCT  996

seq1  TCACATCAGAATCAAGGGAAGGTACTTTAAGCGTATTTGGGC  1041
      ||||||| |||||| |||| |||||||| |||||| ||||||
seq2  TCACATC-GAATCATGGGATGGTACTTT-AGCGTA-TTGGGC  1035

seq1: chr9_28545021_28546106
seq2: B6Ng01-060P18.g_69_1147 (reverse)

seq1  CTGAATTCAGAAATTTAAATGGTCA-GTGTTCTTTTCCCCATTGCATTTA  49
      ||| |||||| || ||||||||||| |||||||||| ||||||||| |||
seq2  CTGGATTCAG-AACTTAAATGGTCAGGTGTTCTTTT-CCCATTGCA-TTA  47

seq1  TTTATTTTTATTTATTTATTTAGTGTTTGTGTGTATATCTTTGTGTGTGT  99
      |   |                   | ||| ||||| ||| |||||||  |
seq2  T---TNNNNNNNNNNNNNNNNNAAGGTTGGGTGTA-ATCCTTGTGTG-AT  92

seq1  GCTCTCAGACACAGGTGTCAACATGTGTTTTGCTCAAAGTGACACTAACA  149
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTC-CAGACACAGGTGTCAACATGTG-TTTGCTCAAAGTGACACTAACA  140

seq1  GAAATGGATTTGGCTTTT-CTTCTACCTCGTAGGTTCTGAGAATCAAACT  198
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAATGGATTTGGCTTTTCCTTCTACCTCGTAGGTTCTGAGAATCAAACT  190

seq1  CAAGTCATCGGTGTAGGCAGC-AAGTACCTTCACTTGATAAACCACCTCA  247
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAAGTCATCGGTGTAGGCAGCAAAGTACCTTCACTTGATAAACCACCTCA  240

seq1  CTGTGGCTGGTCACTCCTTGTAGCAGCTCTCCACTCTCCTAAGCTTCAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTGGTCACTCCTTGTAGCAGCTCTCCACTCTCCTAAGCTTCAGC  290

seq1  ACTAATGTAGACTAGCCCTAGCAAGGTGCTTGCTGCACAGACATTTGCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGTAGACTAGCCCTAGCAAGGTGCTTGCTGCACAGACATTTGCTG  340

seq1  GCACTATGGTGGTTCCTACTACCCTTCCCAGAGTTTCCTGGCAACAGAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATGGTGGTTCCTACTACCCTTCCCAGAGTTTCCTGGCAACAGAGG  390

seq1  CGTCATGTTGTTTTATGAATCATCATGGACTGGGTTTTCATTAATAGGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATGTTGTTTTATGAATCATCATGGACTGGGTTTTCATTAATAGGTA  440

seq1  CAAAAGTATCTTTTCTTAAGGGATTTGACGGGCAATGGAGAGATCTGCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTATCTTTTCTTAAGGGATTTGACGGGCAATGGAGAGATCTGCAT  490

seq1  AAGAACTACAAATTTGAGTGAAGTGGTAAGGGATTGGAAGAATGGTTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTACAAATTTGAGTGAAGTGGTAAGGGATTGGAAGAATGGTTTAA  540

seq1  AATGAGACTCTGGGACCAGTTAGGAGGAATGGGAGGACCCTGACCATGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACTCTGGGACCAGTTAGGAGGAATGGGAGGACCCTGACCATGGC  590

seq1  TTTCTTTTTGACAGTTGTTGATCCCAATTCACTGGGAATGTGTGAGAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTGACAGTTGTTGATCCCAATTCACTGGGAATGTGTGAGAGAA  640

seq1  GCGAGCTCTTATTTTTCAACATTGGGAAACAGACACAGTCTTTGTCATAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCTCTTATTTTTCAACATTGGGAAACAGACACAGTCTTTGTCATAG  690

seq1  TAAAATGCAGGCTGGCACAGCCCTAGCTGCAAGTGTTAACTTATGAGACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCAGGCTGGCACAGCCCTAGCTGCAAGTGTTAACTTATGAGACC  740

seq1  AAGCTATTTCCAGAATTCAGAAAGGGAAGAATTAAACATCCACTTCATGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTTCCAGAATTCAGAAAGGGAAGAATTAAACATCCACTTCATGG  790

seq1  GAGGTGTGATACAGAAAGCAATGGGTTCATGCGCATTTCTCTTTATTATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGATACAGAAAGCAATGGGTTCATGCGCATTTCTCTTTATTATT  840

seq1  TCTTTGAAACCAACACATCTCATAGGTGACAATATATGGGATAGATGGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAACCAACACATCTCATAGGTGACAATATATGGGATAGATGGTA  890

seq1  ATTGCCTTTTTTGCTGGAGCTACATTTTCATCCTCCTCCCTTTCTCCTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTTTTTGCTGGAGCTACATTTTCATCCTCCTCCCTTTCTCCTCC  940

seq1  AATATTAATTATCAGAACTAAAAATAGTCCATTGTAGGCTCTCTGAGCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAATTATCAGAACTAAAAATAGTCCATTGTAGGCTCTCTGAGCCT  990

seq1  CCGGGAGGCTTCTGCAGAAATCTGACATCTGTGCAGGAGGCTCAGCTGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAGGCTTCTGCAGAAATCTGACATCTGTGCAGGAGGCTCAGCTGAG  1040

seq1  ATGTGTGTTTCTGAAAAGCCGGCTTCTGTTTGTGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTTCTGAAAAGCCGGCTTCTGTTTGTGAATTC  1079