BAC Information

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BAC

Clone NameB6Ng01-061L04
Chromosome10 (Build37)9 (Build37)
Map Location 104,053,903 - 104,054,36318,505,817 - 18,506,664
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061L04.bB6Ng01-061L04.g
ACCDH882302DH882303
length896848
definitionDH882302|Mus musculus domesticus DNA, BAC clone: B6Ng01-061L04, 5' end.DH882303|Mus musculus domesticus DNA, BAC clone: B6Ng01-061L04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(18,505,817 - 18,506,664)
sequence
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaagcaaccctgacat
tccacctcacaccagtagaatggctaagatcaaaaattcaggtgacagca
gatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactgtggaaatcagtctggtggttcctcag
aaaattggacatagtactactggaggatccagcaatacctctcctgggca
tatatccaaaagatgttccaactggtaagaaggacacgtgcgctactatg
ttcatagcagccttatttataatagccagaagctggaagaaacccagatg
tccctcaacaggggaatggatacagaaaatgtggtacatttacacaatgg
agtcctactcagctattaaaaagaatgaatttatgaaatttgtaggcaaa
tgaatggacctggagggcagcatcatcctgagtgtggtaacccaatcaca
aatgatctcacatgatatgtactcactgataagtggatattagcccaaga
acttagaatacccaagagacaagatacaatttgtaaaacacatgaaactc
aagaagaatgaagaccaaagtttggacactttgccccttcttagaattag
gaacaaaacatccatggaagtagttacagagacaaagtttggagcagaga
agaaaggatggaccaactaaagactgccatacccgggaatccatcccata
atcagcctccaaatgctgacaccattgcatacactagcaagattttgctg
aaaggaccagatatagctgtctcttgtgaggctatccgggcctagc
gaattcttgcttctgagctggtgaaaggctgcaactgggttgcaagggga
gactctcctcttttctggtgtctccatacttttggtgtttcttttttctg
ccttatcatggtcctgggtctcatcggagctatagtttctagccaggatc
caggatcttgaaagaaaatcattgaagtggtttatgttaccctaacccca
catttcctcttgtcctgtgcctcaagctgcctgaaaacaaaagatttctc
ccttcttatggaaaagtattttcataagatattttacagaatagagtatt
cctccctctctgctgggaaagggtttcttgtgaaacaaataaacaaatgt
tgctctgaacctggtgtgatatgatagcagacttttgactttaaatgctg
taccctgccttgttttggcaccaggagtcattctgaggatctttgtctga
aagattcactaattcttaattgaattaataagtgtaatgatgtgtaattt
tctttcttgggttatttcagtcatgctgaacactgctagcctaggagatg
actgtcatttaaattgcaatttttaatgaatgtatattatttttgcagtg
atgctgaatctaaactatgtgacttgagccattataagttcattaccagt
aactctccttattacctacctgtgccactctggtatataggctacccaag
ccacagtttttgttcctgcgaatatctgagtaatattgactttactaatt
ggttatgaaaattactaacttcataagaattatcatatatatatatatat
atatatatacattatatgtgggtatgtatatgtatatatatatatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-061L04.b_50_519 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGGACTCCATTGTGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||| |||||||||| ||||||||||  |||||||| |||||||||
seq2  TCCATTCCCCTGTTGAGGGACATCTGGGTTTCTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| ||||| | ||| |||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTAGCGCACGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  |||||| ||||||||||||||| ||||||||||||||||||||| 
seq2  TGGAACATCTTTTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCA  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| ||||| |||||| |||||||| |||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCACCAGACTGATTTCCACAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||| |||||||||||||||||| ||||||||| ||||||||||||||||
seq2  TTCT-ACTGGTGTGAGGTGGAATGTCAGGGTTGCTTTGATTTGCATTTCC  399

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      |||||||||||||||| |||||||||||||||||||||||| |||||| |
seq2  CTGATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCATTTG  449

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  470

seq1: chr9_18505817_18506664
seq2: B6Ng01-061L04.g_69_916 (reverse)

seq1  CATATATATATATATACATATACATACCCACATATAATGTATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATATATATACATATACATACCCACATATAATGTATATATATAT  50

seq1  ATATATATATATATGATAATTCTTATGAAGTTAGTAATTTTCATAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATGATAATTCTTATGAAGTTAGTAATTTTCATAACCAA  100

seq1  TTAGTAAAGTCAATATTACTCAGATATTCGCAGGAACAAAAACTGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAAGTCAATATTACTCAGATATTCGCAGGAACAAAAACTGTGGCT  150

seq1  TGGGTAGCCTATATACCAGAGTGGCACAGGTAGGTAATAAGGAGAGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGCCTATATACCAGAGTGGCACAGGTAGGTAATAAGGAGAGTTAC  200

seq1  TGGTAATGAACTTATAATGGCTCAAGTCACATAGTTTAGATTCAGCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGAACTTATAATGGCTCAAGTCACATAGTTTAGATTCAGCATCA  250

seq1  CTGCAAAAATAATATACATTCATTAAAAATTGCAATTTAAATGACAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAATAATATACATTCATTAAAAATTGCAATTTAAATGACAGTCA  300

seq1  TCTCCTAGGCTAGCAGTGTTCAGCATGACTGAAATAACCCAAGAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGGCTAGCAGTGTTCAGCATGACTGAAATAACCCAAGAAAGAAA  350

seq1  ATTACACATCATTACACTTATTAATTCAATTAAGAATTAGTGAATCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACATCATTACACTTATTAATTCAATTAAGAATTAGTGAATCTTTC  400

seq1  AGACAAAGATCCTCAGAATGACTCCTGGTGCCAAAACAAGGCAGGGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGATCCTCAGAATGACTCCTGGTGCCAAAACAAGGCAGGGTACA  450

seq1  GCATTTAAAGTCAAAAGTCTGCTATCATATCACACCAGGTTCAGAGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAAGTCAAAAGTCTGCTATCATATCACACCAGGTTCAGAGCAAC  500

seq1  ATTTGTTTATTTGTTTCACAAGAAACCCTTTCCCAGCAGAGAGGGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTATTTGTTTCACAAGAAACCCTTTCCCAGCAGAGAGGGAGGAA  550

seq1  TACTCTATTCTGTAAAATATCTTATGAAAATACTTTTCCATAAGAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTATTCTGTAAAATATCTTATGAAAATACTTTTCCATAAGAAGGGA  600

seq1  GAAATCTTTTGTTTTCAGGCAGCTTGAGGCACAGGACAAGAGGAAATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTTTGTTTTCAGGCAGCTTGAGGCACAGGACAAGAGGAAATGTG  650

seq1  GGGTTAGGGTAACATAAACCACTTCAATGATTTTCTTTCAAGATCCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGGGTAACATAAACCACTTCAATGATTTTCTTTCAAGATCCTGGA  700

seq1  TCCTGGCTAGAAACTATAGCTCCGATGAGACCCAGGACCATGATAAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTAGAAACTATAGCTCCGATGAGACCCAGGACCATGATAAGGCA  750

seq1  GAAAAAAGAAACACCAAAAGTATGGAGACACCAGAAAAGAGGAGAGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAAACACCAAAAGTATGGAGACACCAGAAAAGAGGAGAGTCTC  800

seq1  CCCTTGCAACCCAGTTGCAGCCTTTCACCAGCTCAGAAGCAAGAATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCAACCCAGTTGCAGCCTTTCACCAGCTCAGAAGCAAGAATTC  848