BAC Information

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BAC

Clone NameB6Ng01-062H04
Chromosome9 (Build37)
Map Location 64,831,750 - 65,003,060
singlet/doubletdoublet
Overlap gene2010321M09Rik, Ptplad1, Dpp8, Nope, Punc
Upstream geneSmad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1
Downstream geneParp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062H04.bB6Ng01-062H04.g
ACCDH882842DH882843
length1,1241,124
definitionDH882842|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H04, 5' end.DH882843|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,001,918 - 65,003,060)(64,831,750 - 64,832,878)
sequence
gaattcaaggtcagcctgggctgcacaggaagacgctgtacaagaaacaa
acaaacagagagaagctacattcactctctagtttcttctggcttttctt
ggagtctaggaaggccactcaggtcacagtggggcgagcactttaggaca
atttctgcagaatgccttccggtgaaagagctacaacttggttctctctc
atggtggtctgcccctcacctgcccctcctctgcgtttaggtggtctggt
ctccatctgcccaccccaagtccccagggcctcttggtagtctccactcc
tccacattccagtggccttgggggcagcagccagaccagaaagtccagtt
tctgcccattatcaactgctagcatctctttgcaacccaacaccagcatt
ccagagagcagcccagggctgccccacctcacagtcagggtcagtgtcca
gcaagggggcagtcaggctctcagattcctcccagtgaggactgacctct
ggggaggccctgacttgtgggggaaatctgtgaagcctttcttttggggt
cctctttgagcctccccctctttggctctctgcagaggggatctgttccc
acagcagagggttccctggaagcaaagaaagttagagaaatcactatgga
ggaagataggcgaaatggcagaccagtgaaggaggaaggaagggctgagg
agaagctgaggagaagctaggggaaactggccgtggggttttttaaaggc
aaacccatcaaagtcacttcagagggaggcagaggtggggagtggatgga
agtgctgagcatcagagacagtggtggtgctgggagcctgtggggtccaa
gtctctaaccagactctcctgtgtctagggtcaatccacctgcccttcta
gccctccacaggccttctctaccttcttagcatggacttcgtgccaggat
tcccttcttgggaagcacacagctgttctcccttcactgaatagaggcaa
tatcagagtttcagcaagtctaagacagagctcagaaatgaggagagtct
tgaaaaaactagcactgtcataggctcacttgggaaggctacagatttgg
gaaccctatgaataaaaattagga
gaattctaatgttgaactgtttttatgcttcatagacagatgtacagaag
atcttaagaaatgcaaggaagctccctgaaaaaacacagacattctataa
ggtgagacataggaaaaggtggacctagtgggtagaagtatgaatgtgta
gagcgattacattggggtgcgcgtgtatcagttttcttaacagtgcaatc
aggggtggctggctaggctcttcctctctcccaatccagttgaatccagc
ctaaatgacacagtcctgtgcagaaggttgctgtgaggggctcagcaagc
agctcaaagggaccatgaatcccagcacaacctcaccactcttgcgtggg
tattagggctaaccccagcaaacactgcacatgatccctagggaatgtcc
cagaacacaacagaagctgcctcaaggaatgactagccaacagttagtgt
aagggaatggatgtgctctgcaatcatgcctagctagtctagaatcacac
tggttcttcagggaccaaagtgacaagggatgaagtggagtggggacatt
tgggctcaccttaagagagaaggaaaggaaaaggaaaaggaaaaagaaaa
ggaaaaaaagggaaaggaaaagggaaaggaaaggaaaggaaaggaaagga
aaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaagga
aggcaggctcttactggcttagcttatagcttgctatggagatcaggctg
gcctagaacttggagatctggctagactcactgttttacccccttggagt
ttggctgaattagattaagtgcagtttgaggtgggccttagcctgttaat
tttaaagtacaataatatgtaggggctagagagatggctcagaagtaaag
agcactttctactttagaggactttcaactcccagtggctcacaaccatc
taaatggttcagaggatctgaccctctggagggcaccaagtatgcacatg
gtgtgtgtgtgttgtgtgtattcaaaacaccaatataataaaaatgaaaa
taaaataaaattactcttgggtggagatatctttcggagagcaacctacc
ttgtctgaataacatcttatacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65001918_65003060
seq2: B6Ng01-062H04.b_46_1169 (reverse)

seq1  TCCTAGTTTTTATTCATTAGGTGGGTCCCCAAATCTGTCTGCCATCCCAA  50
      ||||| |||||||||||     |||| |||||||||||  ||| ||||||
seq2  TCCTAATTTTTATTCAT----AGGGTTCCCAAATCTGT-AGCCTTCCCAA  45

seq1  GTGAGCCTATGGACAAGTGCTAGCTCTCTTCAAGGAACCTCTCCCTCATT  100
      |||||||||| ||| |||||||| | | ||||||    |||| |||||||
seq2  GTGAGCCTAT-GAC-AGTGCTAG-TTTTTTCAAG---ACTCT-CCTCATT  88

seq1  TCTGAGCTCTGTCCTAAGACTTGCTGAAACTCTGATATTTGCCTCTCTCA  150
      |||||||||||| || ||||||||||||||||||||| |||||||| |  
seq2  TCTGAGCTCTGT-CTTAGACTTGCTGAAACTCTGATA-TTGCCTCTATTC  136

seq1  AGTGAAGGGGAGAACAGCTGTGTGCTTCCCAAGGAGGGAATCCTGGGCAC  200
      |||||| |||||||||||||||||||||||||| |||||||||| |||| 
seq2  AGTGAA-GGGAGAACAGCTGTGTGCTTCCCAAGAAGGGAATCCT-GGCA-  183

seq1  CGAAGTCCATGCTAAGAAGGTAGGAGAAGGCCTGTGGAGGGCCTAGAAGG  250
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  CGAAGTCCATGCTAAGAAGGTA-GAGAAGGCCTGTGGAGGG-CTAGAAGG  231

seq1  GCAGGTGGATTGACCCTAGACACAGGAGAGTCTGGTTAGAGACTTGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATTGACCCTAGACACAGGAGAGTCTGGTTAGAGACTTGGACC  281

seq1  CCACAGGCTCCCAGCACCACCACTGTCTCTGATGCTCAGCACTTCCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCTCCCAGCACCACCACTGTCTCTGATGCTCAGCACTTCCATCC  331

seq1  ACTCCCCACCTCTGCCTCCCTCTGAAGTGACTTTGATGGGTTTGCCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCACCTCTGCCTCCCTCTGAAGTGACTTTGATGGGTTTGCCTTTA  381

seq1  AAAAACCCCACGGCCAGTTTCCCCTAGCTTCTCCTCAGCTTCTCCTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCCACGGCCAGTTTCCCCTAGCTTCTCCTCAGCTTCTCCTCAGC  431

seq1  CCTTCCTTCCTCCTTCACTGGTCTGCCATTTCGCCTATCTTCCTCCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTCCTTCACTGGTCTGCCATTTCGCCTATCTTCCTCCATAG  481

seq1  TGATTTCTCTAACTTTCTTTGCTTCCAGGGAACCCTCTGCTGTGGGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTCTAACTTTCTTTGCTTCCAGGGAACCCTCTGCTGTGGGAACA  531

seq1  GATCCCCTCTGCAGAGAGCCAAAGAGGGGGAGGCTCAAAGAGGACCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCTCTGCAGAGAGCCAAAGAGGGGGAGGCTCAAAGAGGACCCCAA  581

seq1  AAGAAAGGCTTCACAGATTTCCCCCACAAGTCAGGGCCTCCCCAGAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGCTTCACAGATTTCCCCCACAAGTCAGGGCCTCCCCAGAGGTC  631

seq1  AGTCCTCACTGGGAGGAATCTGAGAGCCTGACTGCCCCCTTGCTGGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCACTGGGAGGAATCTGAGAGCCTGACTGCCCCCTTGCTGGACAC  681

seq1  TGACCCTGACTGTGAGGTGGGGCAGCCCTGGGCTGCTCTCTGGAATGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGACTGTGAGGTGGGGCAGCCCTGGGCTGCTCTCTGGAATGCTG  731

seq1  GTGTTGGGTTGCAAAGAGATGCTAGCAGTTGATAATGGGCAGAAACTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGTTGCAAAGAGATGCTAGCAGTTGATAATGGGCAGAAACTGGA  781

seq1  CTTTCTGGTCTGGCTGCTGCCCCCAAGGCCACTGGAATGTGGAGGAGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGTCTGGCTGCTGCCCCCAAGGCCACTGGAATGTGGAGGAGTGG  831

seq1  AGACTACCAAGAGGCCCTGGGGACTTGGGGTGGGCAGATGGAGACCAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACCAAGAGGCCCTGGGGACTTGGGGTGGGCAGATGGAGACCAGAC  881

seq1  CACCTAAACGCAGAGGAGGGGCAGGTGAGGGGCAGACCACCATGAGAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAACGCAGAGGAGGGGCAGGTGAGGGGCAGACCACCATGAGAGAG  931

seq1  AACCAAGTTGTAGCTCTTTCACCGGAAGGCATTCTGCAGAAATTGTCCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTTGTAGCTCTTTCACCGGAAGGCATTCTGCAGAAATTGTCCTA  981

seq1  AAGTGCTCGCCCCACTGTGACCTGAGTGGCCTTCCTAGACTCCAAGAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTCGCCCCACTGTGACCTGAGTGGCCTTCCTAGACTCCAAGAAAA  1031

seq1  GCCAGAAGAAACTAGAGAGTGAATGTAGCTTCTCTCTGTTTGTTTGTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGAAACTAGAGAGTGAATGTAGCTTCTCTCTGTTTGTTTGTTTC  1081

seq1  TTGTACAGCGTCTTCCTGTGCAGCCCAGGCTGACCTTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGCGTCTTCCTGTGCAGCCCAGGCTGACCTTGAATTC  1124

seq1: chr9_64831750_64832878
seq2: B6Ng01-062H04.g_66_1189

seq1  GAATTCTAATGTTGAACTGTTTTTATGCTTCATAGACAGATGTACAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGTTGAACTGTTTTTATGCTTCATAGACAGATGTACAGAAG  50

seq1  ATCTTAAGAAATGCAAGGAAGCTCCCTGAAAAAACACAGACATTCTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAGAAATGCAAGGAAGCTCCCTGAAAAAACACAGACATTCTATAA  100

seq1  GGTGAGACATAGGAAAAGGTGGACCTAGTGGGTAGAAGTATGAATGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGACATAGGAAAAGGTGGACCTAGTGGGTAGAAGTATGAATGTGTA  150

seq1  GAGCGATTACATTGGGGTGCGCGTGTATCAGTTTTCTTAACAGTGCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGATTACATTGGGGTGCGCGTGTATCAGTTTTCTTAACAGTGCAATC  200

seq1  AGGGGTGGCTGGCTAGGCTCTTCCTCTCTCCCAATCCAGTTGAATCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGCTGGCTAGGCTCTTCCTCTCTCCCAATCCAGTTGAATCCAGC  250

seq1  CTAAATGACACAGTCCTGTGCAGAAGGTTGCTGTGAGGGGCTCAGCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGACACAGTCCTGTGCAGAAGGTTGCTGTGAGGGGCTCAGCAAGC  300

seq1  AGCTCAAAGGGACCATGAATCCCAGCACAACCTCACCACTCTTGCGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAGGGACCATGAATCCCAGCACAACCTCACCACTCTTGCGTGGG  350

seq1  TATTAGGGCTAACCCCAGCAAACACTGCACATGATCCCTAGGGAATGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGGCTAACCCCAGCAAACACTGCACATGATCCCTAGGGAATGTCC  400

seq1  CAGAACACAACAGAAGCTGCCTCAAGGAATGACTAGCCAACAGTTAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACAACAGAAGCTGCCTCAAGGAATGACTAGCCAACAGTTAGTGT  450

seq1  AAGGGAATGGATGTGCTCTGCAATCATGCCTAGCTAGTCTAGAATCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATGGATGTGCTCTGCAATCATGCCTAGCTAGTCTAGAATCACAC  500

seq1  TGGTTCTTCAGGGACCAAAGTGACAAGGGATGAAGTGGAGTGGGGACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTCAGGGACCAAAGTGACAAGGGATGAAGTGGAGTGGGGACATT  550

seq1  TGGGCTCACCTTAAGAGAGAAGGAAAGGAAAAGGAAAAGGAAAAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCACCTTAAGAGAGAAGGAAAGGAAAAGGAAAAGGAAAAAGAAAA  600

seq1  GGAAAAAAAGGGAAAGGAAAAGGGAAAGGAAAGGAAAGGAAAGGAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAGGGAAAGGAAAAGGGAAAGGAAAGGAAAGGAAAGGAAAGGA  650

seq1  AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA  700

seq1  AGGCAGGCTCTTACTGGCTTAGCTTATAGCTTGCTATGGAGATCAGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCTCTTACTGGCTTAGCTTATAGCTTGCTATGGAGATCAGGCTG  750

seq1  GCCTAGAACTTGGAGATCTGGCTAGACTCACTGTTTTACCCCCTTGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAACTTGGAGATCTGGCTAGACTCACTGTTTTACCCCCTTGGAGT  800

seq1  TTGGCTGAATTAGATTAAGTGCAGTTTGAGGTGGGCCTTAGCCTGTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGAATTAGATTAAGTGCAGTTTGAGGTGGGCCTTAGCCTGTTAAT  850

seq1  TTTAAAGTACAATAATATGTAGGGGCTAGAGAGATGGCTCAGAAGTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTAAAGTACAATAATATGTAGGGGCTAGAGAGATGGCTCAGAAG-TAAA  899

seq1  GAGCACTTTCTACTTTAGAGGACTTTCAACTCCCAGTGGCTCACAACCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTTCTACTTTAGAGGACTTTCAACTCCCAGTGGCTCACAACCAT  949

seq1  CTAAATGGTTCCAGAGGATCTGACCCTCT-GAGGGCACCAAGTATGCACA  999
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  CTAAATGGTT-CAGAGGATCTGACCCTCTGGAGGGCACCAAGTATGCACA  998

seq1  TGGTGTGTGTGTG-TGTGTGTATTCAAAACACCAATATACATAAAAATGA  1048
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TGGTGTGTGTGTGTTGTGTGTATTCAAAACACCAATATA-ATAAAAATGA  1047

seq1  AAATAAAAATAAAATTTACCCTTGGGTGAGTATATCTTCCGGAGAGCACA  1098
      |||| ||||||||| |||| ||||||||   ||||||| ||||||||| |
seq2  AAAT-AAAATAAAA-TTACTCTTGGGTGGAGATATCTTTCGGAGAGCA-A  1094

seq1  CCTACCTTGTCTGAGTAACATCTTACTACCT  1129
      |||||||||||||| |||||||||| |||||
seq2  CCTACCTTGTCTGAATAACATCTTA-TACCT  1124