BAC Information

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BAC

Clone NameB6Ng01-063D15
Chromosome9 (Build37)
Map Location 40,678,223 - 40,807,058
singlet/doubletdoublet
Overlap geneBsx, 4931429I11Rik, Crtam
Upstream geneOlfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8
Downstream gene2810457I06Rik, LOC628495, LOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063D15.bB6Ng01-063D15.g
ACCDH883383DH883384
length847946
definitionDH883383|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D15, 5' end.DH883384|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,806,220 - 40,807,058)(40,678,223 - 40,679,171)
sequence
gaattcttaagaaggctttggcttaacctgtgtgtgctgcttagcttgcg
tgtgcttcaggagctgagtgtgactgccacccaccctttgcttaaaagtt
ggtcatgaatgttctggtgagaagctctccccggaaaggaacacaggtta
tttatttgtttttgtgcatggggtgtgtgtgtgtgtgtgtgtgtgtaagc
atgtgcccttgtgtgtgtgtgtgtatatgctagtacatacaatacagagg
tgagtagagaaccctggttgccctcctctattgcttttttctccttcatt
ctcttgaggtgggggtctccattgaaactgaaccccactcttttagactg
gctacctccagggatctgcctgtctctgacccctacaacactcatgttac
cagcacacacagagacatgcctggctttcctttctatgtgtgtgctgggg
atttgaactcaggttcctcatgcttgtagagcatgtgctcttacccactg
agccatcttccaagtccaggaccattatattaactatgtgaggaaagaga
tgaggaagaacccaggttccattcctgtacagccatgcatgatatagtgc
tggcttggtctatagtatacatcacacactacagccccatgaggtttacc
atatagtctgagtatgtagcaaagccgcactctccaagttttgtgtaaat
acaaagtacagagaataaaaagggggaaaaggccgcctgtgagaggggct
caagtgggtttaaaggcacttgctgctaagacttctgacgtggatgtaga
tcccaatgacccacagaagggaaaggagaaacccactcgtgcagttg
gaattctcaccataattaaaaattgcggtgaacgaagggcaaaccttgag
aacatgttaggttggtcccagcaaccgctttctgtttttccattttcttt
tcttttttaaagatttgtttattcattttatgtatatgagtacactattg
ctctcttcagacacatcaagagagggcatcggatcccattacaggtggct
gtgagccacatatgtctattgggaattgaactcaggacctctctctatcc
ctgctttctgttttcgttttcttttttttctgtgtgtctgtctacattta
aaagaatgaaaagagagggtggtggtggactacacgggcactgtacagtt
ccgtagccttgaatgtagtgtggctacagggcacttgaaacatagcgact
gtgagttcaggttgcagcaaatgacaaatacacatttctctttgaagatc
tagtctgcggctttgcatggtgcagacctgtaatcccagagtttgggaag
atcaagaatccaagattattcttggtggcagattgagttcaagaccaatc
tagactacatgagactttgtgtaaaaaacaaacaaaaagatgcaaataat
atttatgttgagcacacgttgaataataatatttgggatattattcagat
taaatacaatatgcaaatattttcctatttttattttattttattttatt
ttattttattttattttattttattttatttattttattttatttgagat
ggggatttatttatgtatctgaggctgtcctgaaaccaactatgttgact
agactggtcttaaactcactgatatctttgctttcttaaaggaaggtgcc
ttcaggccagccttattttaaatttgacgagtacaattaaaataatcagt
atgggtcacgtgcttatacggatctgcacatttctagggttcgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_40806220_40807058
seq2: B6Ng01-063D15.b_48_894 (reverse)

seq1  CAACTTGCACGAGTTGGTTTTCTCCTTTCAC-TCTGTGGGTCATTGGGAT  49
      |||| |||||||| ||| ||||||||||| | ||||||||||||||||||
seq2  CAAC-TGCACGAG-TGGGTTTCTCCTTTCCCTTCTGTGGGTCATTGGGAT  48

seq1  CTACAT-CACGTCAGAAGTCTTAGCAGCAAGTGCC-TTAAACCCAC-TGA  96
      |||||| |||||||||||||||||||||||||||| |||||||||| |||
seq2  CTACATCCACGTCAGAAGTCTTAGCAGCAAGTGCCTTTAAACCCACTTGA  98

seq1  G-CCCTCTCACAGGCGGCCTTTTCCCC--TTTTATTCTCTGTACTTTGTA  143
      | |||||||||||||||||||||||||  |||||||||||||||||||||
seq2  GCCCCTCTCACAGGCGGCCTTTTCCCCCTTTTTATTCTCTGTACTTTGTA  148

seq1  TTTACAC-AAACTTGGAGAGTGCGGC-TTGCTACATACTCAGACTATATG  191
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  TTTACACAAAACTTGGAGAGTGCGGCTTTGCTACATACTCAGACTATATG  198

seq1  GT-AACCTCATGGGGCTGTAGTGTGTGATGTATACTATAGACCAAGCCAG  240
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCTCATGGGGCTGTAGTGTGTGATGTATACTATAGACCAAGCCAG  248

seq1  CACTATATCATGCATGGCTGTACAGGAATGGAACCTGGGTTCTTCCTCAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATCATGCATGGCTGTACAGGAATGGAACCTGGGTTCTTCCTCAT  298

seq1  CTCTTTCCTCACATAGTTAATATAATGGTCCTGGACTTGGAAGATGGCTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTCACATAGTTAATATAATGGTCCTGGACTTGGAAGATGGCTC  348

seq1  AGTGGGTAAGAGCACATGCTCTACAAGCATGAGGAACCTGAGTTCAAATC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAGAGCACATGCTCTACAAGCATGAGGAACCTGAGTTCAAATC  398

seq1  CCCAGCACACACATAGAAAGGAAAGCCAGGCATGTCTCTGTGTGTGCTGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACACACATAGAAAGGAAAGCCAGGCATGTCTCTGTGTGTGCTGG  448

seq1  TAACATGAGTGTTGTAGGGGTCAGAGACAGGCAGATCCCTGGAGGTAGCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGAGTGTTGTAGGGGTCAGAGACAGGCAGATCCCTGGAGGTAGCC  498

seq1  AGTCTAAAAGAGTGGGGTTCAGTTTCAATGGAGACCCCCACCTCAAGAGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAAGAGTGGGGTTCAGTTTCAATGGAGACCCCCACCTCAAGAGA  548

seq1  ATGAAGGAGAAAAAAGCAATAGAGGAGGGCAACCAGGGTTCTCTACTCAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAGAAAAAAGCAATAGAGGAGGGCAACCAGGGTTCTCTACTCAC  598

seq1  CTCTGTATTGTATGTACTAGCATATACACACACACACACAAGGGCACATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATTGTATGTACTAGCATATACACACACACACACAAGGGCACATG  648

seq1  CTTACACACACACACACACACACACACCCCATGCACAAAAACAAATAAAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACACACACACACACACACACACCCCATGCACAAAAACAAATAAAT  698

seq1  AACCTGTGTTCCTTTCCGGGGAGAGCTTCTCACCAGAACATTCATGACCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGTTCCTTTCCGGGGAGAGCTTCTCACCAGAACATTCATGACCA  748

seq1  ACTTTTAAGCAAAGGGTGGGTGGCAGTCACACTCAGCTCCTGAAGCACAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAGCAAAGGGTGGGTGGCAGTCACACTCAGCTCCTGAAGCACAC  798

seq1  GCAAGCTAAGCAGCACACACAGGTTAAGCCAAAGCCTTCTTAAGAATTC  839
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTAAGCAGCACACACAGGTTAAGCCAAAGCCTTCTTAAGAATTC  847

seq1: chr9_40678223_40679171
seq2: B6Ng01-063D15.g_70_1014

seq1  GAATTCTCACCATAATTAAAAATTGCGGTGAACGAAGGGCAAACCTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCATAATTAAAAATTGCGGTGAACGAAGGGCAAACCTTGAG  50

seq1  AACATGTTAGGTTGGTCCCAGCAACCGCTTTCTGTTTTTCCATTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTAGGTTGGTCCCAGCAACCGCTTTCTGTTTTTCCATTTTCTTT  100

seq1  TCTTTTTTAAAGATTTGTTTATTCATTTTATGTATATGAGTACACTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAAAGATTTGTTTATTCATTTTATGTATATGAGTACACTATTG  150

seq1  CTCTCTTCAGACACATCAAGAGAGGGCATCGGATCCCATTACAGGTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCAGACACATCAAGAGAGGGCATCGGATCCCATTACAGGTGGCT  200

seq1  GTGAGCCACATATGTCTATTGGGAATTGAACTCAGGACCTCTCTCTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACATATGTCTATTGGGAATTGAACTCAGGACCTCTCTCTATCC  250

seq1  CTGCTTTCTGTTTTCGTTTTCTTTTTTTTCTGTGTGTCTGTCTACATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTGTTTTCGTTTTCTTTTTTTTCTGTGTGTCTGTCTACATTTA  300

seq1  AAAGAATGAAAAGAGAGGGTGGTGGTGGACTACACGGGCACTGTACAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGAAAAGAGAGGGTGGTGGTGGACTACACGGGCACTGTACAGTT  350

seq1  CCGTAGCCTTGAATGTAGTGTGGCTACAGGGCACTTGAAACATAGCGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGCCTTGAATGTAGTGTGGCTACAGGGCACTTGAAACATAGCGACT  400

seq1  GTGAGTTCAGGTTGCAGCAAATGACAAATACACATTTCTCTTTGAAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCAGGTTGCAGCAAATGACAAATACACATTTCTCTTTGAAGATC  450

seq1  TAGTCTGCGGCTTTGCATGGTGCAGACCTGTAATCCCAGAGTTTGGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGCGGCTTTGCATGGTGCAGACCTGTAATCCCAGAGTTTGGGAAG  500

seq1  ATCAAGAATCCAAGATTATTCTTGGTGGCAGATTGAGTTCAAGACCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAATCCAAGATTATTCTTGGTGGCAGATTGAGTTCAAGACCAATC  550

seq1  TAGACTACATGAGACTTTGTGTAAAAAACAAACAAAAAGATGCAAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTACATGAGACTTTGTGTAAAAAACAAACAAAAAGATGCAAATAAT  600

seq1  ATTTATGTTGAGCACACGTTGAATAATAATATTTGGGATATTATTCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTGAGCACACGTTGAATAATAATATTTGGGATATTATTCAGAT  650

seq1  TAAATACAATATGCAAATATTTTCCTA-TTTTATTTTATTTTATTTTATT  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAAATACAATATGCAAATATTTTCCTATTTTTATTTTATTTTATTTTATT  700

seq1  TTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTGAGA  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTATTTTATTTTATTTTATTTTATTTTA-TTTATTTTATTTTATTTGAGA  749

seq1  T-GGGATTTATTTATGTATCTGAGGCTGTCCTGAAACCAACTATGTTGAC  798
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATTTATTTATGTATCTGAGGCTGTCCTGAAACCAACTATGTTGAC  799

seq1  TAGACTGGTCTTAAACTCACTGATATCTTTGCTTTCTTAAAGGAAGGTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGGTCTTAAACTCACTGATATCTTTGCTTTCTTAAAGGAAGGTGC  849

seq1  CTTCAGGCCAGGCCTTATTTTAAAATTTGACGAGTACAATTTAAAATAAT  898
      |||||||||| |||||||||| ||||||||||||||||| ||||||||||
seq2  CTTCAGGCCA-GCCTTATTTT-AAATTTGACGAGTACAA-TTAAAATAAT  896

seq1  CAGTATGGGTCACGTGCTTTATTACGGATCAGCACAGTTCTAGGCTTCGG  948
      |||||||||||||||||||   |||||||| ||||| ||||||| |||||
seq2  CAGTATGGGTCACGTGCTT--ATACGGATCTGCACATTTCTAGGGTTCGG  944

seq1  G  949
      |
seq2  G  945