BAC Information

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BAC

Clone NameB6Ng01-063J02
Chromosome9 (Build37)
Map Location 54,112,927 - 54,272,471
singlet/doubletdoublet
Overlap geneLOC100039064, Gldn, Dmxl2
Upstream geneExph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1
Downstream gene4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063J02.bB6Ng01-063J02.g
ACCDH883619DH883620
length1,1891,072
definitionDH883619|Mus musculus domesticus DNA, BAC clone: B6Ng01-063J02, 5' end.DH883620|Mus musculus domesticus DNA, BAC clone: B6Ng01-063J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,112,927 - 54,114,149)(54,271,426 - 54,272,471)
sequence
gaattcactttatctacgcatctttgttttatcctttgtgagttgttcaa
gccaggccaaagtttagagaaggacatagtgagtgcatgcctgtaatcct
agcacttggtggtggtaaggtgtcctagagctcaggaccaaccccagtga
gctacatagtgaattgcaggccaccctgggatacatgagatctcaacaat
actatcccagagtgactgttttccttctcaggatttggaatattctgcct
tctgacctaggtagctagagagaaaaagaaagcaaggtttgatactagat
atcacttggctgtgtactagcaatgtgatcttgggataatttagcttctc
tcaaacctgtcatcctttaaaagagaatagcagtgcttatcttgatgaca
acattgtgaagatatatcatctatgaagtatctgatacaatatcactctc
ctccaattcttatataagatgagcaagacagtagacaggtaatgttgggt
agtttgagacatagcccttggaccatagctatgtcactgataaaattgag
ttgtagacatgatttttgcaagaggattgagaactggtgataacagagtt
catcacagcattgggctatggtagaccataaagaaatgcatagtcacagc
tatacctatctcagaagtctccagcagggaccagtatctctagcaaatag
gccccaggaaggtaaaaagtcattagatcagaatcagtgcagaagaatga
aggctgggacaaaaaaggaggcaccactgagttctaagccaccaaaaggt
caaacaaagatcaatacctagaggtgtatagcaagatgcccaggcaggac
atgggacctggaaggaacctgcctcttggacctgctactacatatagcca
gtcatatgatgtgtcttccatggctttgtgatcacacagtcaccccgatg
ggtctgaagcctgcatcatcaatgcagctgcagacagctctacagagcca
gaaatcatgaagcagaccctgagagactggtgagttatttctcacagtga
aacagtatcctctgggtacctacagatgtctagcactatagaactctgag
ctctacttgatgctggacacctgagactttggccatgcacattgggaaac
aatgagaataccatctcttcaatctactgcaagactttc
gaattccccgtttagttctgtacctgtcttctctaccccctaacacatag
gagagaaaaagagaatagaaaggaaatgaaagaggtcctgagtaaagtca
ggggtcagaaagggggagatgttatcactagatcacttcctgtgattagg
gtcattgagtatcttgggaaaagtttgatatctaattttttctttttctt
gtttcttctctgtgcacaactacttaacaaactacaaccaacaataaaca
ccaaccaaccaacaacccaacaacaacaactcaacaacaaaaacccaccc
tgcctctggggccctagcatttataaatggtccccagaattcagtgtcac
acagtcacagaaactatctgcagctggcaaaaccatgcccttgctagaac
atgagggaaatcatagtcagctgatgaggtcagtccaaagcaaccccata
ttcccatacctgggatcaaaatgaaaacatatttctataatatttctttg
ttttttaaagaaaccaaaactccacaattgttattacatggctgttcttg
gaacacagctgttcttgtcttagccagggcttttgtcactgcatggaaca
cagctgtcttagccagggcttctgttactgagatgaaacacacgaccatt
attattattattactttgctaattatttattattattaattattattatt
attattttatgtgttaaagcatggtgtgagtgtgtaggtatacatgtgaa
agaggacaatattatggggttagctccttcctctcatattttcatgggct
tgttctgggaactgaactaaggaagccaggcttgaagctcctttacacat
tgagccagctcactgcctctttgttgtacattggacagagcgcagttagt
tttatagcttgtactttttgacacaaaaaatatgtaaataaatgaactct
tactatatagtctgttttttgatgtagtgcagtagtccagtacatagaag
agtttggctatgattctgtccagttgaaagactatatttatctgatggtg
atgagttctagagcagctcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54112927_54114149
seq2: B6Ng01-063J02.b_42_1230

seq1  GAATTCACTTTATCTACGCATCTTTGTTTTATCCTTTGTGAGTTGTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTATCTACGCATCTTTGTTTTATCCTTTGTGAGTTGTTCAA  50

seq1  GCCAGGCCAAAGTTTAGAGAAGGACATAGTGAGTGCATGCCTGTAATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCAAAGTTTAGAGAAGGACATAGTGAGTGCATGCCTGTAATCCT  100

seq1  AGCACTTGGTGGTGGTAAGGTGTCCTAGAGCTCAGGACCAACCCCAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGTGGTGGTAAGGTGTCCTAGAGCTCAGGACCAACCCCAGTGA  150

seq1  GCTACATAGTGAATTGCAGGCCACCCTGGGATACATGAGATCTCAACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATAGTGAATTGCAGGCCACCCTGGGATACATGAGATCTCAACAAT  200

seq1  ACTATCCCAGAGTGACTGTTTTCCTTCTCAGGATTTGGAATATTCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCCAGAGTGACTGTTTTCCTTCTCAGGATTTGGAATATTCTGCCT  250

seq1  TCTGACCTAGGTAGCTAGAGAGAAAAAGAAAGCAAGGTTTGATACTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTAGGTAGCTAGAGAGAAAAAGAAAGCAAGGTTTGATACTAGAT  300

seq1  ATCACTTGGCTGTGTACTAGCAATGTGATCTTGGGATAATTTAGCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTGGCTGTGTACTAGCAATGTGATCTTGGGATAATTTAGCTTCTC  350

seq1  TCAAACCTGTCATCCTTTAAAAGAGAATAGCAGTGCTTATCTTGATGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTGTCATCCTTTAAAAGAGAATAGCAGTGCTTATCTTGATGACA  400

seq1  ACATTGTGAAGATATATCATCTATGAAGTATCTGATACAATATCACTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGAAGATATATCATCTATGAAGTATCTGATACAATATCACTCTC  450

seq1  CTCCAATTCTTATATAAGATGAGCAAGACAGTAGACAGGTAATGTTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTCTTATATAAGATGAGCAAGACAGTAGACAGGTAATGTTGGGT  500

seq1  AGTTTGAGACATAGCCCTTGGACCATAGCTATGTCACTGATAAAATTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGACATAGCCCTTGGACCATAGCTATGTCACTGATAAAATTGAG  550

seq1  TTGTAGACATGATTTTTGCAAGAGGATTGAGAACTGGTGATAACAGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACATGATTTTTGCAAGAGGATTGAGAACTGGTGATAACAGAGTT  600

seq1  CATCACAGCATTGGGCTATGGTAGACCATAAAGAAATGCATAGTCACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGCATTGGGCTATGGTAGACCATAAAGAAATGCATAGTCACAGC  650

seq1  TATACCTATCTCAGAAGTCTCCAGCAGGGACCAGTATCTCTAGCAAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTATCTCAGAAGTCTCCAGCAGGGACCAGTATCTCTAGCAAATAG  700

seq1  GCCCCAGGAAGGTAAAAAGTCATTAGATCAGAATCAGTGCAGAAGAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGAAGGTAAAAAGTCATTAGATCAGAATCAGTGCAGAAGAATGA  750

seq1  AGGCTGGGACAAAAAAGGAGGCACCACTGAGTTCTAAGCCACCAAAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGACAAAAAAGGAGGCACCACTGAGTTCTAAGCCACCAAAAGGT  800

seq1  CAAACAAAGATCAATACCTAGAGGTGTATAGCAAGATGCCCAGGCAGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAGATCAATACCTAGAGGTGTATAGCAAGATGCCCAGGCAGGAC  850

seq1  ATGGGACCTGGAAGGAACCTGCCTCTTGGACCTGCTACTACATATAGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACCTGGAAGGAACCTGCCTCTTGGACCTGCTACTACATATAGCCA  900

seq1  GTCATATGATGTGTCTTCCATGGCTTTGTGATCACACAGTCACCCCGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGATGTGTCTTCCATGGCTTTGTGATCACACAGTCACCCCGATG  950

seq1  GGTCTGAAGGCCTGCATCATCAATGCAGGCTGCCAGACAAGGCTCTACAG  1000
      |||||||| |||||||||||||||||| |||| ||||||  |||||||||
seq2  GGTCTGAA-GCCTGCATCATCAATGCA-GCTG-CAGACA--GCTCTACAG  995

seq1  AGGCCAGAAATCATGAAGCAGGACCCTGGAAGAGACTGGTGAGTTTATTT  1050
      | |||||||||||||||||| |||||||  ||||||||||||| ||||||
seq2  A-GCCAGAAATCATGAAGCA-GACCCTG--AGAGACTGGTGAG-TTATTT  1040

seq1  TCCTCACAGTGGAAACCAGTAT-CTCTGGGGTACACTACAAGATGTCTAG  1099
        |||||||||  || |||||| |||| |||||| |||| ||||||||||
seq2  --CTCACAGTG--AAACAGTATCCTCT-GGGTAC-CTAC-AGATGTCTAG  1083

seq1  CACCTATAG-ACTCCTTGAGCTTCCTACATGAGTGGCCTGGGACACCTGA  1148
      || |||||| ||||  ||||||  |||| ||| ||  || ||||||||||
seq2  CA-CTATAGAACTC--TGAGCT--CTACTTGA-TG--CT-GGACACCTGA  1124

seq1  AGAACTTTGGGCCCATGGCACCATGGGAGAGCAATGAGAAT--CATCTCT  1196
         |||||||  |||| ||||  ||||| | ||||||||||  |||||||
seq2  --GACTTTGG--CCAT-GCACATTGGGA-AACAATGAGAATACCATCTCT  1168

seq1  CCAATCCTACCTTGCAACAAGACTTTC  1223
       |||| ||||  ||   ||||||||||
seq2  TCAAT-CTAC--TG---CAAGACTTTC  1189

seq1: chr9_54271426_54272471
seq2: B6Ng01-063J02.g_106_1137 (reverse)

seq1  TCTGAGCTGCCTCTAGAACTCATCTATCATCAGATAAATATAGTCTTTCA  50
      ||||||||| |||||||||||||| | |||||||||||||||||||||||
seq2  TCTGAGCTG-CTCTAGAACTCATC-ACCATCAGATAAATATAGTCTTTCA  48

seq1  ACCTTGGACCAGAAATCATAAGCCAAACTCTTCTATGGTACTGGACTACT  100
      ||  |||| ||| |||||| |||||||||||||||| |||||||||||||
seq2  AC--TGGA-CAG-AATCAT-AGCCAAACTCTTCTAT-GTACTGGACTACT  92

seq1  GCACTACATCAAAAAACAGACTAATATAGTAAGAGTTCATTTTATTTAAC  150
      |||||||||||||||||||||| |||||||||||||||| ||||||| ||
seq2  GCACTACATCAAAAAACAGACT-ATATAGTAAGAGTTCA-TTTATTT-AC  139

seq1  ATATTTTTTGTGTCAAAAAAGTACAAAGCTATTAAAACTAACTGCGCTCT  200
      |||||||||||||| ||||||||| |||||| ||||||||||||||||||
seq2  ATATTTTTTGTGTC-AAAAAGTAC-AAGCTA-TAAAACTAACTGCGCTCT  186

seq1  GTCCAATGTAC-ACAAAGAGGGCAGTGAGCTGGCTCAATGTGTAAAGGAG  249
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GTCCAATGTACAACAAAGA-GGCAGTGAGCTGGCTCAATGTGTAAAGGAG  235

seq1  CTTCAAGCCTGGCTTCCTTAGTTCAGTTCCCAGAACAAGCCCATGAAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGCCTGGCTTCCTTAGTTCAGTTCCCAGAACAAGCCCATGAAAAT  285

seq1  ATGAGAGGAAGGAGCTAACCCCATAATATTGTCCTCTTTCACATGTATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGGAAGGAGCTAACCCCATAATATTGTCCTCTTTCACATGTATAC  335

seq1  CTACACACTCACACCATGCTTTAACACATAAAATAATAATAATAATAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACTCACACCATGCTTTAACACATAAAATAATAATAATAATAATT  385

seq1  AATAATAATAAATAATTAGCAAAGTAATAATAATAATAATGGTCGTGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAAATAATTAGCAAAGTAATAATAATAATAATGGTCGTGTGT  435

seq1  TTCATCTCAGTAACAGAAGCCCTGGCTAAGACAGCTGTGTTCCATGCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCAGTAACAGAAGCCCTGGCTAAGACAGCTGTGTTCCATGCAGT  485

seq1  GACAAAAGCCCTGGCTAAGACAAGAACAGCTGTGTTCCAAGAACAGCCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGCCCTGGCTAAGACAAGAACAGCTGTGTTCCAAGAACAGCCAT  535

seq1  GTAATAACAATTGTGGAGTTTTGGTTTCTTTAAAAAACAAAGAAATATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAACAATTGTGGAGTTTTGGTTTCTTTAAAAAACAAAGAAATATTA  585

seq1  TAGAAATATGTTTTCATTTTGATCCCAGGTATGGGAATATGGGGTTGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATATGTTTTCATTTTGATCCCAGGTATGGGAATATGGGGTTGCTT  635

seq1  TGGACTGACCTCATCAGCTGACTATGATTTCCCTCATGTTCTAGCAAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGACCTCATCAGCTGACTATGATTTCCCTCATGTTCTAGCAAGGG  685

seq1  CATGGTTTTGCCAGCTGCAGATAGTTTCTGTGACTGTGTGACACTGAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTTGCCAGCTGCAGATAGTTTCTGTGACTGTGTGACACTGAATT  735

seq1  CTGGGGACCATTTATAAATGCTAGGGCCCCAGAGGCAGGGTGGGTTTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACCATTTATAAATGCTAGGGCCCCAGAGGCAGGGTGGGTTTTTG  785

seq1  TTGTTGAGTTGTTGTTGTTGGGTTGTTGGTTGGTTGGTGTTTATTGTTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGTTGTTGTTGTTGGGTTGTTGGTTGGTTGGTGTTTATTGTTGG  835

seq1  TTGTAGTTTGTTAAGTAGTTGTGCACAGAGAAGAAACAAGAAAAAGAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTTGTTAAGTAGTTGTGCACAGAGAAGAAACAAGAAAAAGAAAA  885

seq1  AATTAGATATCAAACTTTTCCCAAGATACTCAATGACCCTAATCACAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATATCAAACTTTTCCCAAGATACTCAATGACCCTAATCACAGGA  935

seq1  AGTGATCTAGTGATAACATCTCCCCCTTTCTGACCCCTGACTTTACTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTAGTGATAACATCTCCCCCTTTCTGACCCCTGACTTTACTCAG  985

seq1  GACCTCTTTCATTTCCTTTCTATTCTCTTTTTCTCTCCTATGTGTTA  1046
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTTTCATTTCCTTTCTATTCTCTTTTTCTCTCCTATGTGTTA  1032