BAC Information

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BAC

Clone NameB6Ng01-063K14
Chromosome9 (Build37)
Map Location 112,841,015 - 113,000,842
singlet/doubletdoublet
Overlap geneLOC100039391
Upstream geneArpp21, LOC100039341, LOC620760, LOC100043800, EG622110
Downstream geneLOC100043801, LOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063K14.bB6Ng01-063K14.g
ACCDH883685DH883686
length960738
definitionDH883685|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K14, 5' end.DH883686|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,999,868 - 113,000,842)(112,841,015 - 112,841,751)
sequence
gaattcaagtcagtcaagcacagtaaagctaaaaataatggatctgaaga
gaacttaaaatctgtataccaaatgtcacagattacacttggaaaagtta
gtgcacaatatcaacatggttttggttttttgtgtgtgtgtgtgtgtgtg
tgtgtgcatctatatctataaatacaaatacatgtgcatgttcaaaattg
gaaagagggactctgggggctagtacactcagtgagaaaacacattattt
tgccagtctatccttacacgggtagactcatttaatggtggctttttcta
aatgataatcttcgctgatgtcttatgcaccataatgctacgggaactga
atcaaactttggggggagggtcgaagatgtctgtacacacccatttcaag
ttctataatagtcagtgaatttttgggggtgagggaggcttcaagttgcc
tagatgttaatatctgttccatcaaattgttaaatgctctaagattagac
ctaaaaaaatgtaggactgctattaaacacattgttgcctatgacagaag
ccacagatggatgtggaaagtcgggttgcatgggagcagagagagaccag
aagatgctagtcaagcactgcgcactgacaagatgtgtgttcaaatctgg
agggcacagcacggagctcacatctaaaaaattgtggtgtaagaaacatt
ggacatattatcgtcttgtgttgaatgggacaggaatcatggatgctgac
ttggaaaacagccaggttatagtggtctgttgtggcaccctgtggaatta
gtttattcactgagatttggagtagaggaggtctcttcaatgtgtttgga
aggtatttgtcatgtcaaattttcttgacttgcaatgggaacaatgggga
taacatgttgaaagatagaggtaggactccagggggaggtggattccctg
gagcattagg
gaattcctttacatttacagagagatattagaggatcaaagaataagcca
gatgtgttgactcaagaggaaacgttcaccccagactctaagtgtcctca
tcattagtagcaatgagaagagaggatgaaagccatgtcagctgcagtgc
tccacatcacccaggaccatcagccagtcagctgtcagcagggtgggagt
ctgtgtcatcctttggaaaaagacaaatcctaaacacctctctctgccca
aaatatattagtttcattagagtctaaaataatctatttcagccttgctt
atgctaacagtgtttaaatcactactaaatcctttcttttctctttcttt
cccctagctgaaaaccatgttgacaccacccagctcttaggaatgacttt
tcttcccttctgctgctgcctgttagaagaacaattggcttccagttgtt
atagctaatgatcaacattaagtagaacattagccagaggagaggccatt
gaaatcccaggaaaaccaaacatgtagaaatgcttctttgtgcactaaat
gcacacctcctggtctgggctaattagtaaatcaagccaaaaattaaaaa
tatatatcatgtatgagtttgtctaaagaatactcaaataaagaggcatt
caaaacaaattaagagcatgctaaccatttcaaatagcatatgcaataca
ctcattaagaggggtgtgtgtgtgtgtgtgtgtatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_112999868_113000842
seq2: B6Ng01-063K14.b_47_1006 (reverse)

seq1  CCTAATGCTCCAGGAGAATGCCAGCCTCCCACCTGGAGCCCTTACCTCTA  50
      |||||||||||||| |||| ||| |||||| ||||||| || ||||||||
seq2  CCTAATGCTCCAGG-GAAT-CCA-CCTCCC-CCTGGAGTCC-TACCTCTA  45

seq1  TCTTTTCACCATGTTCTGCCCCATCTGCTTCCCATTTGCAAGTCAAGAAA  100
      || ||||| |||||| | |||||| || |||||| |||||||||||||||
seq2  TC-TTTCAACATGTTAT-CCCCAT-TG-TTCCCA-TTGCAAGTCAAGAAA  90

seq1  ACTTTGACATGACAAATACCCCTTCCAAACACATTTGAAGAGACCTCCTC  150
      | ||||||||||||||||  ||||||||||||| ||||||||||||||||
seq2  A-TTTGACATGACAAATA--CCTTCCAAACACA-TTGAAGAGACCTCCTC  136

seq1  TACTCCAAATCTCAGTGAATAAAACTAATTCCACAGGGTGCCACAACAGA  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TACTCCAAATCTCAGTGAAT-AAACTAATTCCACAGGGTGCCACAACAGA  185

seq1  CCACTATAACCTGGCTGTTTTCCAAGTCAGCATCCATGATTCCTGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATAACCTGGCTGTTTTCCAAGTCAGCATCCATGATTCCTGTCCCA  235

seq1  TTCAACACAAGACGATTAATATGTCCAATGTTTCTTACACCACAA-TTTT  299
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  TTCAACACAAGACGA-TAATATGTCCAATGTTTCTTACACCACAATTTTT  284

seq1  TAGATGTGAGCTCCGTGCTGTGCCCTCCAGATTTGAACACACATCTTGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTGAGCTCCGTGCTGTGCCCTCCAGATTTGAACACACATCTTGTC  334

seq1  AGTGCGCAGTGCTTGACTAGCATCTTCTGGTCTCTCTCTGCTCCCATGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGCAGTGCTTGACTAGCATCTTCTGGTCTCTCTCTGCTCCCATGCA  384

seq1  ACCCGACTTTCCACATCCATCTGTGGCTTCTGTCATAGGCAACAATGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGACTTTCCACATCCATCTGTGGCTTCTGTCATAGGCAACAATGTGT  434

seq1  TTAATAGCAGTCCTACATTTTTTTAGGTCTAATCTTAGAGCATTTAACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGCAGTCCTACATTTTTTTAGGTCTAATCTTAGAGCATTTAACAA  484

seq1  TTTGATGGAACAGATATTAACATCTAGGCAACTTGAAGCCTCCCTCACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGAACAGATATTAACATCTAGGCAACTTGAAGCCTCCCTCACCC  534

seq1  CCAAAAATTCACTGACTATTATAGAACTTGAAATGGGTGTGTACAGACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATTCACTGACTATTATAGAACTTGAAATGGGTGTGTACAGACAT  584

seq1  CCTGGAAAAACCCATGAAAGCTCGATTCAGTTCCCACTACATTATGGTGC  649
      | | ||    |||   |||| | ||||||||||||    |||||||||||
seq2  CTTCGACCCTCCCCCCAAAGTTTGATTCAGTTCCCGTAGCATTATGGTGC  634

seq1  ATAAGACATCACTGAAGATTCACTTGTAGAATAAACCACCCTCTACTGAG  699
      |||||||||||  |||||||  | | ||||| || ||||| |  | ||||
seq2  ATAAGACATCAGCGAAGATTATCATTTAGAAAAAGCCACCATTAAATGAG  684

seq1  TCTACCCGTGTAAGGATAGACTGGCAAAATAATGTCTTTTCTCACTGCTT  749
      ||||||||||||||||||||||||||||||||||| |||||||||||  |
seq2  TCTACCCGTGTAAGGATAGACTGGCAAAATAATGTGTTTTCTCACTGAGT  734

seq1  CTACTAGCCCCCAGAGTCCCATTATTCAATTTTGAACATGTACATGTATT  799
       |||||||||||||||||||  | | |||||||||||||| |||||||||
seq2  GTACTAGCCCCCAGAGTCCCTCTTTCCAATTTTGAACATGCACATGTATT  784

seq1  TGTATATATAGATATAGATGTACACACACACACACACACACACACAAAAA  849
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTATTTATAGATATAGATGCACACACACACACACACACACACACAAAAA  834

seq1  ACCAAAACCATGTTGATATTGTGCACTAACTTTTCCAAGTGTAATCTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACCATGTTGATATTGTGCACTAACTTTTCCAAGTGTAATCTGTG  884

seq1  ACATTTGGTATACAGATTTTAAGTTCTCTTCAGATCCATTATTTTTAGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGTATACAGATTTTAAGTTCTCTTCAGATCCATTATTTTTAGCT  934

seq1  TTACTGTGCTTGACTGACTTGAATTC  975
      ||||||||||||||||||||||||||
seq2  TTACTGTGCTTGACTGACTTGAATTC  960

seq1: chr9_112841015_112841751
seq2: B6Ng01-063K14.g_68_805

seq1  GAATTCCTTTACATTTACAGAGAGATATTAGAGGATCAAAGAATAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTACATTTACAGAGAGATATTAGAGGATCAAAGAATAAGCCA  50

seq1  GATGTGTTGACTCAAGAGGAAACGTTCACCCCAGACTCTAAGTGTCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTTGACTCAAGAGGAAACGTTCACCCCAGACTCTAAGTGTCCTCA  100

seq1  TCATTAGTAGCAATGAGAAGAGAGGATGAAAGCCATGTCAGCTGCAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGTAGCAATGAGAAGAGAGGATGAAAGCCATGTCAGCTGCAGTGC  150

seq1  TCCACATCACCCAGGACCATCAGCCAGTCAGCTGTCAGCAGGGTGGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCACCCAGGACCATCAGCCAGTCAGCTGTCAGCAGGGTGGGAGT  200

seq1  CTGTGTCATCCTTTGGAAAAAGACAAATCCTAAACACCTCTCTCTGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCATCCTTTGGAAAAAGACAAATCCTAAACACCTCTCTCTGCCCA  250

seq1  AAATATATTAGTTTCATTAGAGTCTAAAATAATCTATTTCAGCCTTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTAGTTTCATTAGAGTCTAAAATAATCTATTTCAGCCTTGCTT  300

seq1  ATGCTAACAGTGTTTAAATCACTACTAAATCCTTTCTTTTCTCTTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACAGTGTTTAAATCACTACTAAATCCTTTCTTTTCTCTTTCTTT  350

seq1  CCCCTAGCTGAAAACCATGTTGACACCACCCAGCTCTTAGGAATGACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGCTGAAAACCATGTTGACACCACCCAGCTCTTAGGAATGACTTT  400

seq1  TCTTCCCTTCTGCTGCTGCCTGTTAGAAGAACAATTGGCTTCCAGTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTCTGCTGCTGCCTGTTAGAAGAACAATTGGCTTCCAGTTGTT  450

seq1  ATAGCTAATGATCAACATTAAGTAGAACATTAGCCAGAGGAGAGGCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAATGATCAACATTAAGTAGAACATTAGCCAGAGGAGAGGCCATT  500

seq1  GAAATCCCAGGAAAACCAAACATGTAGAAATGCTTCTTTGTGCACTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCCAGGAAAACCAAACATGTAGAAATGCTTCTTTGTGCACTAAAT  550

seq1  GCACACCTCCTGGTCTGGGCTAATTAGTAAATCAAGCCAAAAATTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTCCTGGTCTGGGCTAATTAGTAAATCAAGCCAAAAATTAAAAA  600

seq1  TATATATCATGTATGAGTTTGTCTAAAGAATACTCAAATAAAGAGGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCATGTATGAGTTTGTCTAAAGAATACTCAAATAAAGAGGCATT  650

seq1  CAAAACAAATTAAGAGCATGCTAACCA-TTCAAATAGCATATGCAATACA  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAAACAAATTAAGAGCATGCTAACCATTTCAAATAGCATATGCAATACA  700

seq1  CTCATTAGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTG  737
      ||||||| ||||||||||||||||||||||||| ||||
seq2  CTCATTAAGAGGGGTGTGTGTGTGTGTGTGTGTATGTG  738