BAC Information

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BAC

Clone NameB6Ng01-063K17
Chromosome9 (Build37)
Map Location 107,719,286 - 107,841,528
singlet/doubletdoublet
Overlap geneRbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv
Upstream geneLOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5
Downstream geneTraip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063K17.bB6Ng01-063K17.g
ACCDH883691DH883692
length1,046673
definitionDH883691|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K17, 5' end.DH883692|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,840,475 - 107,841,528)(107,719,286 - 107,719,839)
sequence
gaattccttcccttctctgcaaaggaaataaaccttactcctgggctacc
caaagggaacagaagagcagggcagaacactaccactgccctccactcca
gcagaccctggaagcttccgggctcagcactccattactgtgtgctcctg
gacttttgtctcttgggctcagtgacccaggactcaggcagcttttgtct
attttggtgcccttgtcagaaagggtccctaggagttctattggattttc
aggcaagtctgagccagaggaaacccaatcaagatggaggccaaaagacc
ccatttcagggtttttcccaccagggtcagcccatttcaggtctcacctt
tcatatccagaaatgaagtttcctgctcccctggtacctgccatgtgggg
ctctagagcttgcagtaattctagagaggccagaaagggcccaggaggcc
tcccgatgactccctactgtgggcaacacctcccaatttagtggcagctg
tgaacaccagcctgcaggcaccctcttcccttccctcccctcttcccctc
tcttagtgattaggactgagtttgctactgcaaacggacatgccccaacc
caaatcccatctagctcacagccacaagcctaggggaggtagtgacctcc
ttccagtgtatgtggtaacacaagacagagtcaagcttcaagcctactgt
ccagttgccttaagacactggatatcatacagtcctgggtgggcaacaag
ctgagccaccatgaatagttcctggtgttgactcttttctacctatgtta
ggagtatggaggagcccctgctaacccccaaccttgcagtcttagaagtg
agcatgcagtctactgctatttccagaatagtcagctctccacatgtagg
caaagccaagagccaattgtcactggccttagaacccggggtcccatctt
tgaagccactggaggccctgcatccctttggttgaggaagggatctgcaa
aagcaatggaatataaagttgctatggtgatggaattaaacaaggg
gaattcagtttgctttgcttttgactctgttctagttttttttttgtttg
tttgtttgtttgtttgtttttttaatttggttttttcgagacagggtttc
tctgtatagccctggctgtcctgaaactcactttgtagaccaggctggcc
tcaaactcagaaatccacctgcctctgcctcccgagtgctgggatcaaag
gcatgtgccaccactgcccagcctgttctagttcttccctctcaaaataa
agtatctgatatttgactttatatgatctcacagtggagagaccttgaat
tttaaaagacaattttgactttttaagagactgaacttttgtgtttgaat
ttgtacagttgagggtcttaaggtttggatgttttatgttgtaatgttga
tattagcagtgaacaagatagggaaggttggctggagagatggctcagtg
gttaagagcactgactgcttttccagaggtcctgagttcaattcccagca
aacacatggtggctcacaaccatctgtaatgaggatccgatgccctcctc
tggtgtgtctgaataaataaattaaaaaaaaagaagaagaagaagaagag
gagaaggaggaggaggctggttctcttttataaaagaaagaaagaaaggg
agaggagaggagaggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107840475_107841528
seq2: B6Ng01-063K17.b_48_1093 (reverse)

seq1  CCCTTGTTTTAAAACTTCCATCACCATAGCAACCTTATACTCCATTGCCT  50
      |||||||||    | |||||||||||||||||| ||||| ||||||| ||
seq2  CCCTTGTTT----AATTCCATCACCATAGCAACTTTATATTCCATTG-CT  45

seq1  TCTGCAGATCCCTTTCCTCCAACCAAAGGGATGCAGGGCCTCCAGTGGCT  100
      | |||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TTTGCAGATCCC-TTCCT-CAACCAAAGGGATGCAGGGCCTCCAGTGGCT  93

seq1  TCAAAGATTGGGACCCCGGGTTCTAAGGCCAGTGACAATTGGCTCTTGGC  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGA-TGGGACCCCGGGTTCTAAGGCCAGTGACAATTGGCTCTTGGC  142

seq1  TTTGCCTACATGTGGAGAGCTGACTATTCTGGAAATAGCAGTAGACTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTACATGTGGAGAGCTGACTATTCTGGAAATAGCAGTAGACTGCA  192

seq1  TGCTCACTTCTAAGACTGCAAGGTTGGGGGTTAGCAGGGGCTCCTCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTTCTAAGACTGCAAGGTTGGGGGTTAGCAGGGGCTCCTCCATA  242

seq1  CTCCTAACATAGGTAGAAAAGAGTCAACACCAGGAACTATTCATGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAACATAGGTAGAAAAGAGTCAACACCAGGAACTATTCATGGTGGC  292

seq1  TCAGCTTGTTGCCCACCCAGGACTGTATGATATCCAGTGTCTTAAGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGTTGCCCACCCAGGACTGTATGATATCCAGTGTCTTAAGGCAA  342

seq1  CTGGACAGTAGGCTTGAAGCTTGACTCTGTCTTGTGTTACCACATACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGTAGGCTTGAAGCTTGACTCTGTCTTGTGTTACCACATACACT  392

seq1  GGAAGGAGGTCACTACCTCCCCTAGGCTTGTGGCTGTGAGCTAGATGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGGTCACTACCTCCCCTAGGCTTGTGGCTGTGAGCTAGATGGGA  442

seq1  TTTGGGTTGGGGCATGTCCGTTTGCAGTAGCAAACTCAGTCCTAATCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTGGGGCATGTCCGTTTGCAGTAGCAAACTCAGTCCTAATCACT  492

seq1  AAGAGAGGGGAAGAGGGGAGGGAAGGGAAGAGGGTGCCTGCAGGCTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGGGAAGAGGGGAGGGAAGGGAAGAGGGTGCCTGCAGGCTGGTG  542

seq1  TTCACAGCTGCCACTAAATTGGGAGGTGTTGCCCACAGTAGGGAGTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCTGCCACTAAATTGGGAGGTGTTGCCCACAGTAGGGAGTCATC  592

seq1  GGGAGGCCTCCTGGGCCCTTTCTGGCCTCTCTAGAATTACTGCAAGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCCTCCTGGGCCCTTTCTGGCCTCTCTAGAATTACTGCAAGCTCT  642

seq1  AGAGCCCCACATGGCAGGTACCAGGGGAGCAGGAAACTTCATTTCTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCACATGGCAGGTACCAGGGGAGCAGGAAACTTCATTTCTGGAT  692

seq1  ATGAAAGGTGAGACCTGAAATGGGCTGACCCTGGTGGGAAAAACCCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGTGAGACCTGAAATGGGCTGACCCTGGTGGGAAAAACCCTGAA  742

seq1  ATGGGGTCTTTTGGCCTCCATCTTGATTGGGTTTCCTCTGGCTCAGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTCTTTTGGCCTCCATCTTGATTGGGTTTCCTCTGGCTCAGACTT  792

seq1  GCCTGAAAATCCAATAGAACTCCTAGGGACCCTTTCTGACAAGGGCACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAAATCCAATAGAACTCCTAGGGACCCTTTCTGACAAGGGCACCA  842

seq1  AAATAGACAAAAGCTGCCTGAGTCCTGGGTCACTGAGCCCAAGAGACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACAAAAGCTGCCTGAGTCCTGGGTCACTGAGCCCAAGAGACAAA  892

seq1  AGTCCAGGAGCACACAGTAATGGAGTGCTGAGCCCGGAAGCTTCCAGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGAGCACACAGTAATGGAGTGCTGAGCCCGGAAGCTTCCAGGGT  942

seq1  CTGCTGGAGTGGAGGGCAGTGGTAGTGTTCTGCCCTGCTCTTCTGTTCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAGTGGAGGGCAGTGGTAGTGTTCTGCCCTGCTCTTCTGTTCCC  992

seq1  TTTGGGTAGCCCAGGAGTAAGGTTTATTTCCTTTGCAGAGAAGGGAAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTAGCCCAGGAGTAAGGTTTATTTCCTTTGCAGAGAAGGGAAGGA  1042

seq1  ATTC  1054
      ||||
seq2  ATTC  1046

seq1: chr9_107719286_107719839
seq2: B6Ng01-063K17.g_187_740

seq1  CCTGAAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACC  50

seq1  TGCCTCTGCCTCCCGAGTGCTGGGATCAAAGGCATGTGCCACCACTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCGAGTGCTGGGATCAAAGGCATGTGCCACCACTGCCC  100

seq1  AGCCTGTTCTAGTTCTTCCCTCTCAAAATAAAGTATCTGATATTTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTCTAGTTCTTCCCTCTCAAAATAAAGTATCTGATATTTGACTT  150

seq1  TATATGATCTCACAGTGGAGAGACCTTGAATTTTAAAAGACAATTTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATCTCACAGTGGAGAGACCTTGAATTTTAAAAGACAATTTTGAC  200

seq1  TTTTTAAGAGACTGAACTTTTGTGTTTGAATTTGTACAGTTGAGGGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGAGACTGAACTTTTGTGTTTGAATTTGTACAGTTGAGGGTCTT  250

seq1  AAGGTTTGGATGTTTTATGTTGTAATGTTGATATTAGCAGTGAACAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTGGATGTTTTATGTTGTAATGTTGATATTAGCAGTGAACAAGAT  300

seq1  AGGGAAGGTTGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGTTGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCT  350

seq1  TTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAACACATGGTGGCTCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAACACATGGTGGCTCACAA  400

seq1  CCATCTGTAATGAGGATCCGATGCCCTCCTCTGGTGTGTCTGAATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTAATGAGGATCCGATGCCCTCCTCTGGTGTGTCTGAATAAATA  450

seq1  AATTAAAAAAAAAGAAGAAGAAGAAGAAGAGGAGAAGGAGGAGGAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAAAAAGAAGAAGAAGAAGAAGAGGAGAAGGAGGAGGAGGCTG  500

seq1  GTTCTCTTTTATAAAAGAAAGAAAGAAAGGGAGAGGAGAGGAGAGGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTTTATAAAAGAAAGAAAGAAAGGGAGAGGAGAGGAGAGGGGAG  550

seq1  GGGA  554
      ||||
seq2  GGGA  554