BAC Information

Click to search

BAC

Clone NameB6Ng01-063L20
Chromosome9 (Build37)
Map Location 60,368,447 - 60,530,188
singlet/doubletdoublet
Overlap geneEG384942, Lrrc49
Upstream gene4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792
Downstream geneLarp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3, LOC100039851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063L20.bB6Ng01-063L20.g
ACCDH883740DH883741
length1,0611,049
definitionDH883740|Mus musculus domesticus DNA, BAC clone: B6Ng01-063L20, 5' end.DH883741|Mus musculus domesticus DNA, BAC clone: B6Ng01-063L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,368,447 - 60,369,527)(60,529,129 - 60,530,188)
sequence
gaattcagctatggtgccaacaaaaatctataggaattgagtagggctac
gtctaaatcacatttgaaaactgtttgcacctttgtacacagagacccaa
tcaagattctctcagggccagcaactgcatcccttcagtctctaccaggt
cagaaacatcagtgatgtccaagacaacacagtggctctaaaaggtggga
gatcttagctgatgcccagatgtctcagatgcaaaggaagttggacttga
aaattccttgagttctggctattttacttactccaaagtctaacgggctt
cagcgccacagatccaagactttatttaattcacctactgcctgcaaaag
ggtgagccactatctggcaagggatgcacttttttaacagcacagaaagc
ttcaggactgcttaagatctcactagacccataattccacgtgctaagtg
ggtacctcgaaatcctcttcccaagacacagctgaagctatttctaagaa
aactgaaactccacttccagatctctcccacttcaaggtgagcaaattga
tcaaaagctaactgttcagtcgcattcagggccacgggtatatgagctac
atttgacgtacagaagcagcaacaggtccaattaggggatcactgacgct
ggattgcaatgattaacctgacctggggatcagaggctttccaagaagcc
agaatgatggaggccaggggctggggctccagaggtgctgacactccatc
aacaatcccaggctaagaaagggagaaaggctggggtggggactacaagt
gctataggtgcaactcaccagttcagctctgagctgctgcgcatacctca
gagggccagtggctgcttcccccaaccccagggggccaggccctaaagtt
gagggtcaagatggagaataaaggcagagcaggcctccaggaaagagaaa
gaagagaaggtagggaaaggaaaagagagagaggaaagggaaaaagaagg
agaaaaagaagagaatagagaggatgggaaagagaaaaggaaggggagtg
tgaagaaagag
gaattcttttattcacaaagtgcaaatgaaatctattctttgctgtgtgc
ctctgcgttccacgtcatggatggctttgatctgctgggaaaccttccat
gaagttttaatcgtagttcagagaacctagtgaaatgttcatcagacaaa
cgagagtctttgtcccctgagtttcctttcgtcatcttccactgaccttg
gcagctaatctcgatgctggagctaatctgtgggctgttttcggctttgg
actccaaattgttgtgctggttcctgtggcttggggacggaccctgcctg
caagcgttcctatctgttgatgttcattggtgaacacagtgttggttcta
gaagcttacctcttgggacagcttgagtagctgttggctgtttcaggtta
cctcggaaagtgagatgtgagcactgattgttttctggacagaacgagat
gccctgtccctgtgaacctgaacaggctggcagtactgacactactgctt
tacagttacgagctgtgtgtgacttgattttaggctgttaccatatctac
agcgacctcctgaaggtgggtcagcttctaggcttgtttttcctcttgtt
gggcagttgaagcagcagaatgctatggcctcctcaggtcctagcgtccc
acctttcgctcccatcgccaacttcttcatcacttgctactttcagtgga
ctctatatacagagaaaaatatgggtgttcacatttttggaacttttcat
cattgctttcagaccattctgtactcttctagttcttttttttttttttt
taaaagatttatttatttattatatgtaggacactgtagctgtcttcaga
cactccagaggggggagtcagatctcatacaaatggttgtgggccaccat
gtgggttgctgggatttgaactcggaccttcggaagagcagtcaggtgct
cttacccactgagcatctcacagccctcttctacttcttagaatgtgttt
agtactactttcttaactcatttgtgctgttcttatttgcagtaactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_60368447_60369527
seq2: B6Ng01-063L20.b_48_1108

seq1  GAATTCAGCTATGGTGCCAACAAAAATCTATAGGAATTGAGTAGGGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTATGGTGCCAACAAAAATCTATAGGAATTGAGTAGGGCTAC  50

seq1  GTCTAAATCACATTTGAAAACTGTTTGCACCTTTGTACACAGAGACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAATCACATTTGAAAACTGTTTGCACCTTTGTACACAGAGACCCAA  100

seq1  TCAAGATTCTCTCAGGGCCAGCAACTGCATCCCTTCAGTCTCTACCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATTCTCTCAGGGCCAGCAACTGCATCCCTTCAGTCTCTACCAGGT  150

seq1  CAGAAACATCAGTGATGTCCAAGACAACACAGTGGCTCTAAAAGGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACATCAGTGATGTCCAAGACAACACAGTGGCTCTAAAAGGTGGGA  200

seq1  GATCTTAGCTGATGCCCAGATGTCTCAGATGCAAAGGAAGTTGGACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGCTGATGCCCAGATGTCTCAGATGCAAAGGAAGTTGGACTTGA  250

seq1  AAATTCCTTGAGTTCTGGCTATTTTACTTACTCCAAAGTCTAACGGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTGAGTTCTGGCTATTTTACTTACTCCAAAGTCTAACGGGCTT  300

seq1  CAGCGCCACAGATCCAAGACTTTATTTAATTCACCTACTGCCTGCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCACAGATCCAAGACTTTATTTAATTCACCTACTGCCTGCAAAAG  350

seq1  GGTGAGCCACTATCTGGCAAGGGATGCACTTTTTTAACAGCACAGAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCCACTATCTGGCAAGGGATGCACTTTTTTAACAGCACAGAAAGC  400

seq1  TTCAGGACTGCTTAAGATCTCACTAGACCCATAATTCCACGTGCTAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACTGCTTAAGATCTCACTAGACCCATAATTCCACGTGCTAAGTG  450

seq1  GGTACCTCGAAATCCTCTTCCCAAGACACAGCTGAAGCTATTTCTAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTCGAAATCCTCTTCCCAAGACACAGCTGAAGCTATTTCTAAGAA  500

seq1  AACTGAAACTCCACTTCCAGATCTCTCCCACTTCAAGGTGAGCAAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAACTCCACTTCCAGATCTCTCCCACTTCAAGGTGAGCAAATTGA  550

seq1  TCAAAAGCTAACTGTTCAGTCGCATTCAGGGCCACGGGTATATGAGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCTAACTGTTCAGTCGCATTCAGGGCCACGGGTATATGAGCTAC  600

seq1  ATTTGACGTACAGAAGCAGCAACAGGTCCAATTAGGGGATCACTGACGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACGTACAGAAGCAGCAACAGGTCCAATTAGGGGATCACTGACGCT  650

seq1  GGATTGCAATGATTAACCTGACCTGGGGATCAGAGGCTTTCCAAGAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAATGATTAACCTGACCTGGGGATCAGAGGCTTTCCAAGAAGCC  700

seq1  AGAATGATGGAGGCCAGGGGCTGGGGCTCCAGAGGTGCTGACACTCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGATGGAGGCCAGGGGCTGGGGCTCCAGAGGTGCTGACACTCCATC  750

seq1  AACAATCCCAGGCTAAGAAAGGGAGAAAGGCTGGGGTGGGGACTACAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCCAGGCTAAGAAAGGGAGAAAGGCTGGGGTGGGGACTACAAGT  800

seq1  GCTATAGGTGCAACTCACCAGTTCAGCTCTGAGCTGCTGCGCATACCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGGTGCAACTCACCAGTTCAGCTCTGAGCTGCTGCGCATACCTCA  850

seq1  GGAGGGCCAGTGGCTGCTTCCCCCAACCCCAGGGGGCCAGGCCCTAAAGT  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GAGGGCCAGTGGCTGCTTCCCCCAACCCCAGGGGGCCAGGCCCTAAAGT  899

seq1  TGAGGGTCAAGGATGGAGAATAAAGGCAGAGCAGGCCTCCAGGAAAGAGA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCAA-GATGGAGAATAAAGGCAGAGCAGGCCTCCAGGAAAGAGA  948

seq1  AAAGAAAGAGAAAGGTAGGGGAAAGGAAAAAGAAGAGGAAGAGGAAAGGG  1000
      ||   ||||| |||||| ||||||||||    |||||  |||||||| ||
seq2  AA--GAAGAG-AAGGTA-GGGAAAGGAA----AAGAGAGAGAGGAAA-GG  989

seq1  GAAAAAGAAAGGAAGAAAAAGGAAAGAGGAAATAGGAGAGGATGGGAAAG  1050
      |||||||||  | ||||||||  |||||  |||| |||||||||||||||
seq2  GAAAAAGAA--GGAGAAAAAG--AAGAG--AATA-GAGAGGATGGGAAAG  1032

seq1  AGAAAAGGAAGGGGAAGTGTGAAAGAAAGAG  1081
      |||||||||||||| |||||| |||||||||
seq2  AGAAAAGGAAGGGG-AGTGTG-AAGAAAGAG  1061

seq1: chr9_60529129_60530188
seq2: B6Ng01-063L20.g_67_1115 (reverse)

seq1  CTAGTTACTGGCAAATAAAGAACAGCACAGATGAGTTTAAGAAAAGTTAG  50
      ||||||||| |||||| |||||||||||| ||||| ||||||||   |||
seq2  CTAGTTACT-GCAAAT-AAGAACAGCACAAATGAG-TTAAGAAA--GTAG  45

seq1  ATACTAAAACACATTCTAAAGAAGTAGAAGAGGGCTGGTGAGATGGCTCA  100
       |||| ||||||||||| |||||||||||||||||| ||||||| |||||
seq2  -TACT-AAACACATTCT-AAGAAGTAGAAGAGGGCT-GTGAGAT-GCTCA  90

seq1  GTGGGTAAGAGCACCTGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCC  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGGGTAAGAGCACCTGACTGCTCTTCCGAAGGTCC-GAGTTCAAATCCC  139

seq1  AGCAA-CCACATGGTGGCTCACAACCATTTGTAATGAGATCTGACTCCCT  199
      ||||| |||||||||||| ||||||||||||| |||||||||||||||| 
seq2  AGCAACCCACATGGTGGCCCACAACCATTTGT-ATGAGATCTGACTCCCC  188

seq1  CTTCTGGAGTGTCTGAAGACAGCTACAGTGTCCTTACATATAATAAATAA  249
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTCTGGAGTGTCTGAAGACAGCTACAGTGTCC-TACATATAATAAATAA  237

seq1  ATAAATC-TTTAAAAAAAAAAAAAAAAGAACTAGAAGAGTACAGAATGGT  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTTTAAAAAAAAAAAAAAAAGAACTAGAAGAGTACAGAATGGT  287

seq1  CTGAAAGCAATGATGAAAAGTTCCAAAAATGTGAACACCCATATTTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCAATGATGAAAAGTTCCAAAAATGTGAACACCCATATTTTTCT  337

seq1  CTGTATATAGAGTCCACTGAAAGTAGCAAGTGATGAAGAAGTTGGCGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATAGAGTCCACTGAAAGTAGCAAGTGATGAAGAAGTTGGCGATG  387

seq1  GGAGCGAAAGGTGGGACGCTAGGACCTGAGGAGGCCATAGCATTCTGCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGAAAGGTGGGACGCTAGGACCTGAGGAGGCCATAGCATTCTGCTG  437

seq1  CTTCAACTGCCCAACAAGAGGAAAAACAAGCCTAGAAGCTGACCCACCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTGCCCAACAAGAGGAAAAACAAGCCTAGAAGCTGACCCACCTT  487

seq1  CAGGAGGTCGCTGTAGATATGGTAACAGCCTAAAATCAAGTCACACACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTCGCTGTAGATATGGTAACAGCCTAAAATCAAGTCACACACAG  537

seq1  CTCGTAACTGTAAAGCAGTAGTGTCAGTACTGCCAGCCTGTTCAGGTTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTAACTGTAAAGCAGTAGTGTCAGTACTGCCAGCCTGTTCAGGTTCA  587

seq1  CAGGGACAGGGCATCTCGTTCTGTCCAGAAAACAATCAGTGCTCACATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGGGCATCTCGTTCTGTCCAGAAAACAATCAGTGCTCACATCT  637

seq1  CACTTTCCGAGGTAACCTGAAACAGCCAACAGCTACTCAAGCTGTCCCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCGAGGTAACCTGAAACAGCCAACAGCTACTCAAGCTGTCCCAA  687

seq1  GAGGTAAGCTTCTAGAACCAACACTGTGTTCACCAATGAACATCAACAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAGCTTCTAGAACCAACACTGTGTTCACCAATGAACATCAACAGA  737

seq1  TAGGAACGCTTGCAGGCAGGGTCCGTCCCCAAGCCACAGGAACCAGCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACGCTTGCAGGCAGGGTCCGTCCCCAAGCCACAGGAACCAGCACA  787

seq1  ACAATTTGGAGTCCAAAGCCGAAAACAGCCCACAGATTAGCTCCAGCATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTGGAGTCCAAAGCCGAAAACAGCCCACAGATTAGCTCCAGCATC  837

seq1  GAGATTAGCTGCCAAGGTCAGTGGAAGATGACGAAAGGAAACTCAGGGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAGCTGCCAAGGTCAGTGGAAGATGACGAAAGGAAACTCAGGGGA  887

seq1  CAAAGACTCTCGTTTGTCTGATGAACATTTCACTAGGTTCTCTGAACTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTCTCGTTTGTCTGATGAACATTTCACTAGGTTCTCTGAACTAC  937

seq1  GATTAAAACTTCATGGAAGGTTTCCCAGCAGATCAAAGCCATCCATGACG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAACTTCATGGAAGGTTTCCCAGCAGATCAAAGCCATCCATGACG  987

seq1  TGGAACGCAGAGGCACACAGCAAAGAATAGATTTCATTTGCACTTTGTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACGCAGAGGCACACAGCAAAGAATAGATTTCATTTGCACTTTGTGA  1037

seq1  ATAAAAGAATTC  1060
      ||||||||||||
seq2  ATAAAAGAATTC  1049