BAC Information

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BAC

Clone NameB6Ng01-063P08
Chromosome9 (Build37)
Map Location 85,640,305 - 85,641,467
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666672, BC023892, Ibtk
Downstream gene4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063P08.bB6Ng01-063P08.g
ACCDH883892DH883893
length1,2111,151
definitionDH883892|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P08, 5' end.DH883893|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatttctccaattcctttgacatgaaggggttttgtattttg
tcagatgcttttttttttccatctaaggagatgatcatgatcattttttt
cctttgagtttgtttatatagtggattgcattaatggattttcatatatt
gatccaaccttgcattcctgggatgaagcctacttgatcatggtgaatga
tggttttgatgtgttcttggattctgtttacaagaattttattgagtatt
tttgcaaggatattcataagcaagatttgtctgaagttctcttttttggt
taagtccttatgtggtttaggtatcagagtatttgtggcttcatagaatg
aattaggtaacgttccttctgtttctattttatagaatagtttgagaaat
attggtattatgtctctttgaagatctggtagaattctgcattaaatcca
tctagctctgggcttttttggttgggagattttaaatgacttacactatt
tccttgtgtgatatgggcctgtttagatagttcacctgctcttgatttaa
cttcagtatgtggtaactgtctagaaaaccatccatttcatctaaatttt
tccagtctaggcttttgtagtaagatctgatgatttttgaattccctcag
tttctattgctatgtctcccttttcatttctggttttactaatttggata
ctgcctctgggccctttagtttgtttggctaggggtttatctgtcttgtt
gattctctcaaagagccagcttttgggtttgttgatcctttgtattgttc
tgtttgtttctatttggttcattttgtccctgagtttgactagttcctct
cttctactcctcttaggtgtgttcgcttctttttgttctagagctctcag
agtgctgttaagttgctagtataatatctctccagtttctttaccagggc
tcgtaatgctatgaattttctctagtactgctttcatgtgtccatacgtt
tggatatgttgtgtcacatttcatgagttcaggagtctttatttctttct
ttattttttcctgacaaggtacattggagtagaaaagtggtcatttccat
gtataattgagcttccggtttttatgagggctgtctgggtgcgaaaaata
gaattaacatttggtaacttgtccaaggtcagttcagtgtacgatcctca
tcaacacggat
gaattcacagccactctgattgcatgcataagatctgaataagataaagc
cagacaaaatcctagcataggacagacagggaggtggtcaggaagtcact
tccctagcagaaaaactactgacaattgatggttaatgggagaaagttag
ttttcatcaggggtgtggcttttgagaggctacccacaatccagcagata
gccctacacccaagtacacattggtcacattaaatggtctaagtgttttt
ttaaaaaaagagaacacatttaaagtaggaggaaatactggtagaaagga
caggaaagaaattagaggggaagaaatgtggagtgggtttaatgaaacac
agtacatgcaattttcaaacaaacaatatatatatatatatttgaaatat
atatatttgaaatatatttgaaatatatatatatttcaaagcccaggtag
aatttcagatgggctagctggagagatggctcagtggttaagaacactga
ctggtctttcagagttcctgagttcaattcccagcaaccacatggtggct
cacaaccatctgtaatgggatctgatgccctcttcttgtgtctgaagaca
gatagtgtactcacatacattaaataaataaatcttttttaaaatcacat
tattttttaaaaaaagttccagatgggcatgcgtgtttacagtggtatga
atgacaatggactccaaaggttcctatgcttgaatgcttggcccccagtt
agttcaactgtttgggaaagactgggaggtatggctgtgtgttgctgtga
ccttgatagatgaggtgtgtcactggaggtgagctttgaagtttcaaatg
ctcaaaccaggcctggtcagtctcagtctctgtttgtctctctttcggat
caggtggtgagctctcagctactgctcagtaccatgacccaaagtacgta
gctcccttaagaccctgagcaacctctgaattttctcaagcttcatattt
catttgtaaaagtgagaattagggctggagagatggctcagctgtaggag
actgaactgctcttctgatttcaatccagcaccacattgttggcctcaac
accttagtagatctggacacccctttccgtgcatctgaggcaggtgcagt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_85640305_85641467
seq2: B6Ng01-063P08.g_64_1214

seq1  GAATTCACAGCCACTCTGATTGCATGCATAAGATCTGAATAAGATAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCCACTCTGATTGCATGCATAAGATCTGAATAAGATAAAGC  50

seq1  CAGACAAAATCCTAGCATAGGACAGACAGGGAGGTGGTCAGGAAGTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAAATCCTAGCATAGGACAGACAGGGAGGTGGTCAGGAAGTCACT  100

seq1  TCCCTAGCAGAAAAACTACTGACAATTGATGGTTAATGGGAGAAAGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGCAGAAAAACTACTGACAATTGATGGTTAATGGGAGAAAGTTAG  150

seq1  TTTTCATCAGGGGTGTGGCTTTTGAGAGGCTACCCACAATCCAGCAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCAGGGGTGTGGCTTTTGAGAGGCTACCCACAATCCAGCAGATA  200

seq1  GCCCTACACCCAAGTACACATTGGTCACATTAAATGGTCTAAGTGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACACCCAAGTACACATTGGTCACATTAAATGGTCTAAGTGTTTTT  250

seq1  TTAAAAAAAGAGAACACATTTAAAGTAGGAGGAAATACTGGTAGAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAGAGAACACATTTAAAGTAGGAGGAAATACTGGTAGAAAGGA  300

seq1  CAGGAAAGAAATTAGAGGGGAAGAAATGTGGAGTGGGTTTAATGAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGAAATTAGAGGGGAAGAAATGTGGAGTGGGTTTAATGAAACAC  350

seq1  AGTACATGCAATTTTCAAACAAACAATATATATATATATATTTGAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATGCAATTTTCAAACAAACAATATATATATATATATTTGAAATAT  400

seq1  ATATATTTGAAATATATTTGAAATATATATATATTTCAAAGCCCAGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGAAATATATTTGAAATATATATATATTTCAAAGCCCAGGTAG  450

seq1  AATTTCAGATGGGCTAGCTGGAGAGATGGCTCAGTGGTTAAGAACACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGATGGGCTAGCTGGAGAGATGGCTCAGTGGTTAAGAACACTGA  500

seq1  CTGGTCTTTCAGAGTTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTTCAGAGTTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCT  550

seq1  CACAACCATCTGTAATGGGATCTGATGCCCTCTTCTTGTGTCTGAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCTGTAATGGGATCTGATGCCCTCTTCTTGTGTCTGAAGACA  600

seq1  GATAGTGTACTCACATACATTAAATAAATAAATCTTTTTTAAAATCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGTACTCACATACATTAAATAAATAAATCTTTTTTAAAATCACAT  650

seq1  TATTTTTTAAAAAAAGTTCCAGATGGGCATGCGTGTTTACAGTGGTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAAAAAAAGTTCCAGATGGGCATGCGTGTTTACAGTGGTATGA  700

seq1  ATGACAATGGACTCCAAAGGTTCCTATGCTTGAATGCTTGGCCCCCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGGACTCCAAAGGTTCCTATGCTTGAATGCTTGGCCCCCAGTT  750

seq1  AGTTCAACTGTTTGGGAAAGACTGGGAGGTATGGCTGTGTGTTGCTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAACTGTTTGGGAAAGACTGGGAGGTATGGCTGTGTGTTGCTGTGA  800

seq1  CCTTGATAGATGAGGTGTGTCACTGGAGGTGAGCTTTGAAGTTTCAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATAGATGAGGTGTGTCACTGGAGGTGAGCTTTGAAGTTTCAAATG  850

seq1  CTCAAACCAGGCCTGGTCAGTCTCAGTCTCTGTTTGTCTCTCTTTCGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCAGGCCTGGTCAGTCTCAGTCTCTGTTTGTCTCTCTTTCGGAT  900

seq1  CAGGT-GTGAGCTCTCAGCTACTGCTCAGTACCATGACCC-AAGTACGTA  948
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGTGGTGAGCTCTCAGCTACTGCTCAGTACCATGACCCAAAGTACGTA  950

seq1  GCTTCCCTAAGGACCCTGAGCAAACCTCTGAATTTTCTCAAAGCTTCAAT  998
      || ||||| | |||||||||| ||||||||||||||||| ||||||| ||
seq2  GC-TCCCTTAAGACCCTGAGC-AACCTCTGAATTTTCTC-AAGCTTC-AT  996

seq1  ATTTTCATTTGTAAAAAGTGAGATTAAGGGCTGGAGAGATGGCTCAGCTG  1048
      | |||||||||| |||||||||| | ||||||||||||||||||||||| 
seq2  A-TTTCATTTGT-AAAAGTGAGAATTAGGGCTGGAGAGATGGCTCAGCT-  1043

seq1  GTAAGAGCACTG-ACTGCTCTTCTGAATTCAAATCCCAGCAACCACATGG  1097
      ||| ||| |||| ||||||||||||| |||||   ||||| ||||||| |
seq2  GTAGGAG-ACTGAACTGCTCTTCTGATTTCAA--TCCAGC-ACCACATTG  1089

seq1  TGGCTCACAACCACCCTTAATGAGATCT-GACACCCTCTTCTCGTGCATC  1146
      | |  | ||||   ||||| | |||||| ||||||| |||  ||||||||
seq2  TTGGCCTCAAC--ACCTTAGT-AGATCTGGACACCC-CTTTCCGTGCATC  1135

seq1  TGAAGTCAGGTGCAGTG  1163
      || || |||||||||||
seq2  TG-AGGCAGGTGCAGTG  1151