BAC Information

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BAC

Clone NameB6Ng01-064B09
Chromosome9 (Build37)
Map Location 95,827,369 - 95,954,822
singlet/doubletdoublet
Overlap geneXrn1
Upstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik
Downstream geneGk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064B09.bB6Ng01-064B09.g
ACCDH883980DH883981
length1,1551,131
definitionDH883980|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B09, 5' end.DH883981|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,953,650 - 95,954,822)(95,827,369 - 95,828,529)
sequence
gaattcaacaccagcatttgtaagaaacagtaagactattttaagactta
tggcagagtctccatgacgtaaattaaatacacacaatgagcagctccat
ataaagactggttcctacttttgaaaaagtacgatcatttttactcttta
aaaatataagcatatcacaaaactaaaagatcaatatgtttatatataaa
tgcacgccatcatgtccttgagaaaatttcataaattccaaatcatttca
acagtgtgagcaacacacatccaggagtgacacgcagagacaaaatgcaa
cagcactgagcagttcagcaggtgctaaaatgcacaaccagaatgggaca
ggcagtaaaaaatgtccacacaaaaagacatgttggaattgttaaaaagt
ttacatttttaccagtcccaggaagctctacacacagacccacaacgagt
tttcacatatgtgaagtaagcagagaaaaagccacataaggaagtgtggt
gacgcatgctggaatctcagaacatggaggattaccatgagtacccggcc
agccaggactacacagcaagaccccgtctcaaaagaaaaaaaaatatcaa
caaagcaaatataacccaagaagcctaaaaaagcatagtgattaacgttc
tgtactgtactctattgcagtctgatttgtaatcgctgtaccctggagat
tttgaaacttaattctattaggaattctgaatgctggtttttgaataatc
taaaaaaattcgttatttttcaaatctagattgctattcctagtttgaag
cagtcagacgaatgctctggagaatcttctaaagttgctttggtacaaga
tttagaacaaagcagcactggccgcatcagcgctcaatagctccatggcc
accgccggtgtgcggtgtgcgtgctcgctccagagcatccgagggactga
ttttggccacagacgctgtgacagagtgcagccactctccagtcatgttg
tcatcattacaacaaattaaaccaacacttaggaattacaggcctattca
tgccgcatttagtatccctccatatattggtaaaaagcttgtatgatgat
agataatgactaatttataagttcagatctctatgaggagccatgggtta
gagtg
gaattcattgtcttatctttaatatggagtggtagataaacttgaattta
caagtgaatttgttgagacaaggtttctcagtgtggtctggtagcctcaa
actcagagatttgtctgcctctgcctccagaatgcttggattaaaggtgt
atacctgcacagcctggctaaggatctatttttaaattaaagatgtatta
attgacttttccttttcagggtgacgttcaccaggcgcttattgttcttc
aaaagggcgtggaattatgttttcctgaaaataagtccccatctgagagt
aagcacatgctaatccatggccgggccacactgctagttggccgctttat
ggaagaaacggctaactttgaaagcaacgcagtaatgaagaaatacaagg
tatgtgtgtaatgtaaaccattggtttttcttttaatggattaaatgaat
ttttaaatctatattgaagtgtatatgtgtaatagtactcaggacaactg
actttttcttaaataaagtttataagtatatggaattatcacaaatgaat
atatgcatgagaccaccaccccaggttagaaattgttgcacagtgaatct
acttctgagaccaactaccaaatcctgaaatagtatagtcagtacactat
agcacccacctttcaccgaagtaacaatcttatgttcctatacaaagtaa
ccacatctgagccatttaataaacttgctatatactcaaagatggccttg
aaattctgatcctcctgcctaacataagtgctaggattagagtcatgcac
catcatgccctgtttaatccacagctgagacttaaactcagaatcttgtc
catgttagacaaacactttaccaactgagcaacatccctagcccatggaa
tttctttataaaaataatgtacatctctacagtattaaatttacagataa
attataacgacaaacaccccatatgtgtaaaaaaaaaaacagaatgcaat
tcaaaatacctagactttattataaaaattgcctgcgattagacctcact
gggtcctcgatcatggcgaaactcaagtctggttaaggcggccagattgg
cagaatgtcaacaatccgaaccagagtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95953650_95954822
seq2: B6Ng01-064B09.b_48_1202 (reverse)

seq1  CACTCTAACCATTGGCTTCCTCATTAGAAGGATCCTTGAAC-TATAAATT  49
      ||||||||||  |||| |||||| ||||  ||||  ||||| ||||||||
seq2  CACTCTAACCCATGGC-TCCTCA-TAGA--GATC--TGAACTTATAAATT  44

seq1  AGTCATTATCTTATCATCATAACAAGCTTTTTTACACTATTATTGAGGGA  99
      |||||||||| ||||||||| |||||||||||  || || ||| ||||||
seq2  AGTCATTATC-TATCATCAT-ACAAGCTTTTTACCAATA-TATGGAGGGA  91

seq1  TAACTAAATGCGGCATGAATTAGGCCTTGTAATTTCCTAAGTGTGGGTTT  149
      | ||||||||||||||||| |||||| ||||| ||||||||||| |||||
seq2  T-ACTAAATGCGGCATGAA-TAGGCC-TGTAA-TTCCTAAGTGTTGGTTT  137

seq1  TATTTGTTTGTAATGATGGAACAACATGACTGGAGAGTGGCCTGCACTCT  199
       ||||| |||||||||||  |||||||||||||||||||| |||||||||
seq2  AATTTG-TTGTAATGATG--ACAACATGACTGGAGAGTGG-CTGCACTCT  183

seq1  GTTCACAGCCGTCTGTGGCCAAAATCAGTCCCTCGGATGCTCTGGAGCGA  249
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  G-TCACAG-CGTCTGTGGCCAAAATCAGTCCCTCGGATGCTCTGGAGCGA  231

seq1  GCACGCACACCGCACACCGGCGGTGGCCATGGAGCTATTGAGCGCTGATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCACACCGCACACCGGCGGTGGCCATGGAGCTATTGAGCGCTGATG  281

seq1  CGGCCAGTGCTGCTTTGTTCTAAATCTTGTACCAAAGCAACTTTAGAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGTGCTGCTTTGTTCTAAATCTTGTACCAAAGCAACTTTAGAAGA  331

seq1  TTCTCCAGAGCATTCGTCTGACTGCTTCAAACTAGGAATAGCAATCTAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGAGCATTCGTCTGACTGCTTCAAACTAGGAATAGCAATCTAGA  381

seq1  TTTGAAAAATAACGAATTTTTTTAGATTATTCAAAAACCAGCATTCAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAATAACGAATTTTTTTAGATTATTCAAAAACCAGCATTCAGAA  431

seq1  TTCCTAATAGAATTAAGTTTCAAAATCTCCAGGGTACAGCGATTACAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATAGAATTAAGTTTCAAAATCTCCAGGGTACAGCGATTACAAAT  481

seq1  CAGACTGCAATAGAGTACAGTACAGAACGTTAATCACTATGCTTTTTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGCAATAGAGTACAGTACAGAACGTTAATCACTATGCTTTTTTAG  531

seq1  GCTTCTTGGGTTATATTTGCTTTGTTGATATTTTTTTTTCTTTTGAGACG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGGGTTATATTTGCTTTGTTGATATTTTTTTTTCTTTTGAGACG  581

seq1  GGGTCTTGCTGTGTAGTCCTGGCTGGCCGGGTACTCATGGTAATCCTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGCTGTGTAGTCCTGGCTGGCCGGGTACTCATGGTAATCCTCCA  631

seq1  TGTTCTGAGATTCCAGCATGCGTCACCACACTTCCTTATGTGGCTTTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGAGATTCCAGCATGCGTCACCACACTTCCTTATGTGGCTTTTTC  681

seq1  TCTGCTTACTTCACATATGTGAAAACTCGTTGTGGGTCTGTGTGTAGAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTACTTCACATATGTGAAAACTCGTTGTGGGTCTGTGTGTAGAGC  731

seq1  TTCCTGGGACTGGTAAAAATGTAAACTTTTTAACAATTCCAACATGTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGACTGGTAAAAATGTAAACTTTTTAACAATTCCAACATGTCTT  781

seq1  TTTGTGTGGACATTTTTTACTGCCTGTCCCATTCTGGTTGTGCATTTTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGGACATTTTTTACTGCCTGTCCCATTCTGGTTGTGCATTTTAG  831

seq1  CACCTGCTGAACTGCTCAGTGCTGTTGCATTTTGTCTCTGCGTGTCACTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTGAACTGCTCAGTGCTGTTGCATTTTGTCTCTGCGTGTCACTC  881

seq1  CTGGATGTGTGTTGCTCACACTGTTGAAATGATTTGGAATTTATGAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTGTGTTGCTCACACTGTTGAAATGATTTGGAATTTATGAAATT  931

seq1  TTCTCAAGGACATGATGGCGTGCATTTATATATAAACATATTGATCTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGGACATGATGGCGTGCATTTATATATAAACATATTGATCTTTT  981

seq1  AGTTTTGTGATATGCTTATATTTTTAAAGAGTAAAAATGATCGTACTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTGATATGCTTATATTTTTAAAGAGTAAAAATGATCGTACTTTT  1031

seq1  TCAAAAGTAGGAACCAGTCTTTATATGGAGCTGCTCATTGTGTGTATTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTAGGAACCAGTCTTTATATGGAGCTGCTCATTGTGTGTATTTA  1081

seq1  ATTTACGTCATGGAGACTCTGCCATAAGTCTTAAAATAGTCTTACTGTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACGTCATGGAGACTCTGCCATAAGTCTTAAAATAGTCTTACTGTTT  1131

seq1  CTTACAAATGCTGGTGTTGAATTC  1173
      ||||||||||||||||||||||||
seq2  CTTACAAATGCTGGTGTTGAATTC  1155

seq1: chr9_95827369_95828529
seq2: B6Ng01-064B09.g_70_1200

seq1  GAATTCATTGTCTTATCTTTAATATGGAGTGGTAGATAAACTTGAATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTCTTATCTTTAATATGGAGTGGTAGATAAACTTGAATTTA  50

seq1  CAAGTGAATTTGTTGAGACAAGGTTTCTCAGTGTGGTCTGGTAGCCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAATTTGTTGAGACAAGGTTTCTCAGTGTGGTCTGGTAGCCTCAA  100

seq1  ACTCAGAGATTTGTCTGCCTCTGCCTCCAGAATGCTTGGATTAAAGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGATTTGTCTGCCTCTGCCTCCAGAATGCTTGGATTAAAGGTGT  150

seq1  ATACCTGCACAGCCTGGCTAAGGATCTATTTTTAAATTAAAGATGTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGCACAGCCTGGCTAAGGATCTATTTTTAAATTAAAGATGTATTA  200

seq1  ATTGACTTTTCCTTTTCAGGGTGACGTTCACCAGGCGCTTATTGTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTTTTCCTTTTCAGGGTGACGTTCACCAGGCGCTTATTGTTCTTC  250

seq1  AAAAGGGCGTGGAATTATGTTTTCCTGAAAATAAGTCCCCATCTGAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCGTGGAATTATGTTTTCCTGAAAATAAGTCCCCATCTGAGAGT  300

seq1  AAGCACATGCTAATCCATGGCCGGGCCACACTGCTAGTTGGCCGCTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATGCTAATCCATGGCCGGGCCACACTGCTAGTTGGCCGCTTTAT  350

seq1  GGAAGAAACGGCTAACTTTGAAAGCAACGCAGTAATGAAGAAATACAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAACGGCTAACTTTGAAAGCAACGCAGTAATGAAGAAATACAAGG  400

seq1  TATGTGTGTAATGTAAACCATTGGTTTTTCTTTTAATGGATTAAATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTAATGTAAACCATTGGTTTTTCTTTTAATGGATTAAATGAAT  450

seq1  TTTTAAATCTATATTGAAGTGTATATGTGTAATAGTACTCAGGACAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCTATATTGAAGTGTATATGTGTAATAGTACTCAGGACAACTG  500

seq1  ACTTTTTCTTAAATAAAGTTTATAAGTATATGGAATTATCACAAATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTTAAATAAAGTTTATAAGTATATGGAATTATCACAAATGAAT  550

seq1  ATATGCATGAGACCACCACCCCAGGTTAGAAATTGTTGCACAGTGAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATGAGACCACCACCCCAGGTTAGAAATTGTTGCACAGTGAATCT  600

seq1  ACTTCTGAGACCAACTACCAAATCCTGAAATAGTATAGTCAGTACACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAGACCAACTACCAAATCCTGAAATAGTATAGTCAGTACACTAT  650

seq1  AGCACCCACCTTTCACCGAAGTAACAATCTTATGTTCCTATACAAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACCTTTCACCGAAGTAACAATCTTATGTTCCTATACAAAGTAA  700

seq1  CCACATCTGAGCCATTTAATAAACTTGCTATATACTCAAAGATGGCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCTGAGCCATTTAATAAACTTGCTATATACTCAAAGATGGCCTTG  750

seq1  AAATTCTGATCCTCCTGCCTAACATAAGTGCTAGGATTAGAGTCATGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGATCCTCCTGCCTAACATAAGTGCTAGGATTAGAGTCATGCAC  800

seq1  CATCATGCCCTGTTTAATCCACAGCTGAGACTTAAACTCAGAATCTTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCCCTGTTTAATCCACAGCTGAGACTTAAACTCAGAATCTTGTC  850

seq1  CATGTTAGACAAACACTTTACCAACTGAGCAACATCCCTAGCCCATGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAGACAAACACTTTACCAACTGAGCAACATCCCTAGCCCATGGAA  900

seq1  TTTCTTTATAAAAAATAATGTAACATCTCTACCAGGTATTAAATTTTACA  950
      ||||||||| ||||||||||| ||||||||||   |||||||| ||||| 
seq2  TTTCTTTAT-AAAAATAATGT-ACATCTCTAC--AGTATTAAA-TTTAC-  944

seq1  AGATAAAATTATAAACGACAAACACCCCAATAATGTGTAAAAAAAAAAAA  1000
      |||| ||||||| ||||||||||||||||   |||||| |||||||||||
seq2  AGAT-AAATTAT-AACGACAAACACCCCA--TATGTGT-AAAAAAAAAAA  989

seq1  CAGAAATGCAAATTCAAAAATACCTAGGACTTTTATTATAAAAATTTGCT  1050
      ||| ||||| ||||| |||||||||| ||| |||||||||||||||  ||
seq2  CAG-AATGC-AATTC-AAAATACCTA-GAC-TTTATTATAAAAATTGCCT  1034

seq1  GCAGATAGACCTCACTTGGGTCCTCGATCCATGGGCGAAACTCAGGGTTC  1100
      ||   |||||||||| |||||||||||| ||| ||||||||||| |  ||
seq2  GCGATTAGACCTCAC-TGGGTCCTCGAT-CAT-GGCGAAACTCAAG--TC  1079

seq1  TGGTTACAGGCGGGCAAGGAGTTGGCGAGAAATGACAAACAAATACGAAC  1150
      |||||| |||||| ||  || ||||| || |||| |||   ||| |||||
seq2  TGGTTA-AGGCGGCCA--GA-TTGGC-AG-AATGTCAA--CAATCCGAAC  1121

seq1  ACAGAGTGCTG  1161
       ||||||||||
seq2  -CAGAGTGCTG  1131