BAC Information

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BAC

Clone NameB6Ng01-064B22
Chromosome9 (Build37)
Map Location 50,505,134 - 50,506,244
singlet/doubletsinglet
Overlap geneDixdc1
Upstream geneNcam1, EG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat
Downstream gene2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064B22.bB6Ng01-064B22.g
ACCDH884003DH884004
length1,0701,251
definitionDH884003|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B22, 5' end.DH884004|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttccgaatccatcacccagacaacagtcaagtgtctaagactc
actgacccccttaatgtgcccctgacgtctcgcacacaggctaatcctca
caaccacaagcaggagttaacatttcctcttcccagaaaccggagaaaaa
ctaaagacaagtgcagtggaaggagccagacttcagcatttgtggaccag
tgtctcgccggtctccactgctgaccagctttagtggagatgtcccggtt
ggtactctgctctcttctttcttaaaacatttaagaaaaaatttaaagct
tcacatcattgcagatcaaagtaagcggctttatctaaatatctgtaggt
gcatagatcaaaccggtgagaccagcaagggtggtcagcaagtagtgttc
agaaatgttgactgttttctgtaaatctcttatctatttccactatttag
gcaatctgacctctaggctaacatgaattcacagccaaaaagctgtaaag
gggctgtgtccttgataaagagagatttatgagtgcctaggccccagcat
ttaccacttacaaaactgggaatccaggcgcacaaagcctttgtcagctg
ctcctcttcctcagctgacaaggtgctaggctaacaagccccactgcctg
cacctggctggaccgcaggagggatatgcgagacaaaccggagggagggc
gtagtggggatctaggatgctgagaaacggttttcctaaaagcacagacg
catgctcagttccacctctcctctccaagagcgttgcctcccatataagg
gcagaagaggcgggcgtctggatacccaaccccaccggggagtggcggag
cagccaaaggaaacaacatttctttttcttgaaatgagactgccaggtac
gcacggagtagactaggaaactagatgccagatcacgacctcggaggagg
aaccctgagtgtgtgtcagagcagaagcacatcctagaaagagagctttt
atctctgctcagtctgggagatcttcatgctatattagactggactcctc
ctactcgttaagtctacttg
gaattctggggactcctgagagggtatgagagagagagccaggagagggt
cttgcagaggctgctgccccgctgctgctggtccctgctattgctggtcc
ctgctgttgtgttttctgcttttgctattgctggttttctggattgctag
atgtatctcctgatgatgagactggacttgcccctagtaacttgacacct
ctagtcagcaggaagtagtctaaagagatctatgccccctttcccctcta
acattcattttctctctcgcttacctaatgttggggggttagaagggttc
ccggtggaaacagtagtagatataagaacccaacaaattattctgaaaag
tccagttacataggccagcctggtctactgaacaagttccaggacatcta
ctgctgaaagaaaaaaaaaaaaaaaccctccaataaaggttgaaaggtat
ctgggtattgggtgtaagccatcattagagtcagtttaacactatgctca
cacagacaataatagcagtaggctctcccctaggtcccatgaccagcccc
aggtataagctctgtctggtgaaatgggctgtgaatcaaatagaaagtgg
ttggttaccactataacatctgtgccatattgggcccctgggcctatctt
accaggccactcactatggagtcctcagccttcacatctggataagaata
ctgactgctccaccagcagcatgcacagcaccgataaaagggaatgttta
aatttcctaaaatcaaattgaaacaaaagcaccacttaccaggaattgtg
aaagatacagcaaaggccattctagaggaatttgacagccacaggccctt
atattaaggaaacaaaacagaggaatcacaataaatagtttcacaataca
ctgatgtttccagaaagtatagccaaatccaaatcagtatactgagagat
atcagatctaaattataaaaaggaactgccagcagtggtggcacatgctt
atccagcaatgggaggcagagacagccgattcctgagttcgaggccagcc
tggtcctctgagtgagtccaggacacctaggcctcacacagaaaactctg
tctgcagaattaattaatgatattaataagggcaagtgtggtgttgcact
cgtctttatccacacttggagccaactcaggcggaatccggtagtccgat
gccacgcactagccgtctatacagagatatagatgtcttagctgacgcat
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50505134_50506244
seq2: B6Ng01-064B22.b_46_1115

seq1  GAATTCTTTCCGAATCCATCACCCAGACAACAGTCAAGTGTCTAAGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCGAATCCATCACCCAGACAACAGTCAAGTGTCTAAGACTC  50

seq1  ACTGACCCCCTTAATGTGCCCCTGACGTCTCGCACACAGGCTAATCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCCCTTAATGTGCCCCTGACGTCTCGCACACAGGCTAATCCTCA  100

seq1  CAACCACAAGCAGGAGTTAACATTTCCTCTTCCCAGAAACCGGAGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACAAGCAGGAGTTAACATTTCCTCTTCCCAGAAACCGGAGAAAAA  150

seq1  CTAAAGACAAGTGCAGTGGAAGGAGCCAGACTTCAGCATTTGTGGACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACAAGTGCAGTGGAAGGAGCCAGACTTCAGCATTTGTGGACCAG  200

seq1  TGTCTCGCCGGTCTCCACTGCTGACCAGCTTTAGTGGAGATGTCCCGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGCCGGTCTCCACTGCTGACCAGCTTTAGTGGAGATGTCCCGGTT  250

seq1  GGTACTCTGCTCTCTTCTTTCTTAAAACATTTAAGAAAAAATTTAAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCTGCTCTCTTCTTTCTTAAAACATTTAAGAAAAAATTTAAAGCT  300

seq1  TCACATCATTGCAGATCAAAGTAAGCGGCTTTATCTAAATATCTGTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCATTGCAGATCAAAGTAAGCGGCTTTATCTAAATATCTGTAGGT  350

seq1  GCATAGATCAAACCGGTGAGACCAGCAAGGGTGGTCAGCAAGTAGTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGATCAAACCGGTGAGACCAGCAAGGGTGGTCAGCAAGTAGTGTTC  400

seq1  AGAAATGTTGACTGTTTTCTGTAAATCTCTTATCTATTTCCACTATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTGACTGTTTTCTGTAAATCTCTTATCTATTTCCACTATTTAG  450

seq1  GCAATCTGACCTCTAGGCTAACATGAATTCACAGCCAAAAAGCTGTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGACCTCTAGGCTAACATGAATTCACAGCCAAAAAGCTGTAAAG  500

seq1  GGGCTGTGTCCTTGATAAAGAGAGATTTATGAGTGCCTAGGCCCCAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGTCCTTGATAAAGAGAGATTTATGAGTGCCTAGGCCCCAGCAT  550

seq1  TTACCACTTACAAAACTGGGAATCCAGGCGCACAAAGCCTTTGTCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTTACAAAACTGGGAATCCAGGCGCACAAAGCCTTTGTCAGCTG  600

seq1  CTCCTCTTCCTCAGCTGACAAGGTGCTAGGCTAACAAGCCCCACTGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTCCTCAGCTGACAAGGTGCTAGGCTAACAAGCCCCACTGCCTG  650

seq1  CACCTGGCTGGACCGCAGGAGGGATATGCGAGACAAACCGGAGGGAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTGGACCGCAGGAGGGATATGCGAGACAAACCGGAGGGAGGGC  700

seq1  GTAGTGGGGATCTAGGATGCTGAGAAACGGTTTTCCTAAAAGCACAGACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGGGATCTAGGATGCTGAGAAACGGTTTTCCTAAAAGCACAGACG  750

seq1  CATGCTCAGTTCCACCTCTCCTCTCCAAGAGCGTTGCCTCCCATATAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCAGTTCCACCTCTCCTCTCCAAGAGCGTTGCCTCCCATATAAGG  800

seq1  GCAGAAGGAGGCGGGCGTCTGGATACCCAACCCCACCGGGGGAGTGGCGG  850
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  GCAGAA-GAGGCGGGCGTCTGGATACCCAACCCCACC-GGGGAGTGGCGG  848

seq1  AGCAGCCAAAGGAAAACAACATTTCTTTTTCTTGAAATGAGACTGCCAGG  900
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  AGCAGCCAAAGG-AAACAACATTTCTTTTTCTTGAAATGAGACTGCCA-G  896

seq1  GTAAGGCCACGGAGGTAAGACTAGGAAACTAGATGGCCAAGATCAAGGAC  950
      ||| |  |||||||   ||||||||||||||||||  | ||||| | |||
seq2  GTACG--CACGGAG--TAGACTAGGAAACTAGATG--CCAGATC-ACGAC  939

seq1  CTCGGAGGGAGGAAAACCCTGAGGTGTGTGTCAGAGCAGAAGCACCATCC  1000
      |||||| |||||  |||||||| ||||||||||||||||||||| |||||
seq2  CTCGGA-GGAGG--AACCCTGA-GTGTGTGTCAGAGCAGAAGCA-CATCC  984

seq1  TAGAAAAGGAAGGAGCTTTTAATCTTCTGCCTCAGGTCTGGGGAAGGAAT  1050
      ||||||  ||  |||||||| ||| |||| |||| |||||||  ||  ||
seq2  TAGAAA--GA--GAGCTTTT-ATC-TCTG-CTCA-GTCTGGG--AG--AT  1022

seq1  CTTCATGCTAATTAATTGTAAGACCTGGACTCCTCCCTAACTCGTTTAAA  1100
      ||||||||||      | | ||| ||||||||||||   |||||||   |
seq2  CTTCATGCTA------TATTAGA-CTGGACTCCTCC--TACTCGTT---A  1060

seq1  AGTCCTACTTG  1111
      ||| |||||||
seq2  AGT-CTACTTG  1070