BAC Information

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BAC

Clone NameB6Ng01-064L02
Chromosome9 (Build37)
Map Location 25,787,357 - 25,899,936
singlet/doubletdoublet
Overlap genenone
Upstream geneHerpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064L02.bB6Ng01-064L02.g
ACCDH884401DH884402
length1,100864
definitionDH884401|Mus musculus domesticus DNA, BAC clone: B6Ng01-064L02, 5' end.DH884402|Mus musculus domesticus DNA, BAC clone: B6Ng01-064L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,787,357 - 25,788,479)(25,899,073 - 25,899,936)
sequence
gaattccctaagccataacccttatctcctaatgcgtttgtatagaaaag
aagtcattatgctttcaggcagagcctgtcattgtttttagtagtttttt
aactgccatgttatgctagttatacaagcttgtctcagatgcagcaagag
ttggatgggttaatacagagaaacaactatggtcagaattacaaatagtg
gtactgcatatcatcaaatttctaagtcatagagggtctgaaaccgtcac
accatcctgttcactggaaaatttcaagaagtacctgtgagtaataacta
cagtggtggcaggcaccaacatttagtgggcgagcagcagggacctacca
tcaccactgttctttatgtgtattgtagaacattaatctaatgacaatgg
aatgaaagaactataattgacaaatatcaaggctagacaatgtaagtaaa
ttgcctttaataacaaatataataattaattaaccagattggaacccaag
tatttccatatgtcaaaacttacagctttgtaaaggtctcactgcagttt
aatcatgaggagggagaaagaaccaagggtcaggatgggttctgtgagca
tgtatgacattatcaagctctgtggtgtcagacaccttacttataaaaca
gataataggactcaatcctatacattgtaacaattgtctcataacaatga
gataaattctactgccattacattctgacagggaactctaaatggagaac
ttacctgtcttgttcaaagttatatttctacaggggttatctggtgggga
ttgtgttctagtctagtcataaaacaaaaacatattttactaacttcttc
ctatgccttctcagtagggcctgtggttcccagggacacctaagaatact
tgagaataccaaagtccctgtgagcactggagagatgtgaagtactcgag
gtgcctgaaagcctcatcaaatcagagacattgtgagtatgagatggctc
aggtgctgagaggtcagatcctaagatacctctatatgcagagagcaccg
agagagaagagcttggagtatgaatgcctggaaaaccaagaggtgggagc

gaattcatgaaagaaaactgtaagcggacctttagaaggcgaacaagtgt
cactagtagggtgattattatagacgcgaacaatgtcccttcgagagggg
ctgcataaacaacttccttagagatggaagcacaggctaaagaggcaggc
gatacagcctgccagccaatttgcttgctggctcagatttctgcctggat
cacaatgcagaaggcttcaaggggctgctagccttgacctggatttgagt
cctacctctaaaatactgggtatgtgtgatcatggcgagctctcatcctc
tcatttgctaaagggggattaaaatgcctactatgtctggtccaaatact
gtgtgtgtgtgtgtgtgtgtgtgtgtgcttttcaaataataaatacaaat
attgttattgtttacaatgccgtggcactggaaactggggtcctctccaa
ggcctggagaggtcagcaggagattcctgatgcacacctgaaatttttaa
ctccaaataaataaaaaaaaaaactcattcaaaaagatggatatatatct
ttttgttgttgttgcaagtgacaaagatttaaattaaaatttttaaatgc
agagtttttaccaatggactttctggaacttttgtgtaaacaaaggtaac
tttggtgttgaaaaggagagaaaaaaaggggagctttcaagctgggagct
ggaggggtggaaaggaaaagaaatgactcctatacctggaaaaagtgaca
ttagaggaaatgtggtccaaacgttttgtagacaagctaagctttgtccc
atgagtgttgtgggagagggacatgttggcccatcattggattctgaacc
cattcttctgactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_25787357_25788479
seq2: B6Ng01-064L02.b_42_1141

seq1  GAATTCCCTAAGCCATAACCCTTATCTCCTAATGCGTTTGTATAGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAGCCATAACCCTTATCTCCTAATGCGTTTGTATAGAAAAG  50

seq1  AAGTCATTATGCTTTCAGGCAGAGCCTGTCATTGTTTTTAGTAGTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTATGCTTTCAGGCAGAGCCTGTCATTGTTTTTAGTAGTTTTTT  100

seq1  AACTGCCATGTTATGCTAGTTATACAAGCTTGTCTCAGATGCAGCAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCATGTTATGCTAGTTATACAAGCTTGTCTCAGATGCAGCAAGAG  150

seq1  TTGGATGGGTTAATACAGAGAAACAACTATGGTCAGAATTACAAATAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGGGTTAATACAGAGAAACAACTATGGTCAGAATTACAAATAGTG  200

seq1  GTACTGCATATCATCAAATTTCTAAGTCATAGAGGGTCTGAAACCGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCATATCATCAAATTTCTAAGTCATAGAGGGTCTGAAACCGTCAC  250

seq1  ACCATCCTGTTCACTGGAAAATTTCAAGAAGTACCTGTGAGTAATAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTGTTCACTGGAAAATTTCAAGAAGTACCTGTGAGTAATAACTA  300

seq1  CAGTGGTGGCAGGCACCAACATTTAGTGGGCGAGCAGCAGGGACCTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGGCAGGCACCAACATTTAGTGGGCGAGCAGCAGGGACCTACCA  350

seq1  TCACCACTGTTCTTTATGTGTATTGTAGAACATTAATCTAATGACAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACTGTTCTTTATGTGTATTGTAGAACATTAATCTAATGACAATGG  400

seq1  AATGAAAGAACTATAATTGACAAATATCAAGGCTAGACAATGTAAGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGAACTATAATTGACAAATATCAAGGCTAGACAATGTAAGTAAA  450

seq1  TTGCCTTTAATAACAAATATAATAATTAATTAACCAGATTGGAACCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTAATAACAAATATAATAATTAATTAACCAGATTGGAACCCAAG  500

seq1  TATTTCCATATGTCAAAACTTACAGCTTTGTAAAGGTCTCACTGCAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCATATGTCAAAACTTACAGCTTTGTAAAGGTCTCACTGCAGTTT  550

seq1  AATCATGAGGAGGGAGAAAGAACCAAGGGTCAGGATGGGTTCTGTGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAGGAGGGAGAAAGAACCAAGGGTCAGGATGGGTTCTGTGAGCA  600

seq1  TGTATGACATTATCAAGCTCTGTGGTGTCAGACACCTTACTTATAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGACATTATCAAGCTCTGTGGTGTCAGACACCTTACTTATAAAACA  650

seq1  GATAATAGGACTCAATCCTATACATTGTAACAATTGTCTCATAACAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAGGACTCAATCCTATACATTGTAACAATTGTCTCATAACAATGA  700

seq1  GATAAATTCTACTGCCATTACATTCTGACAGGGAACTCTAAATGGAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTCTACTGCCATTACATTCTGACAGGGAACTCTAAATGGAGAAC  750

seq1  TTACCTGTCTTGTTCAAAGTTATATTTCTACAGGGGTTATCTGGTGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTCTTGTTCAAAGTTATATTTCTACAGGGGTTATCTGGTGGGGA  800

seq1  TTGTGTTCTAGTCTAGTCATAAAACAAAAACATATTTTACTAACTTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCTAGTCTAGTCATAAAACAAAAACATATTTTACTAACTTCTTC  850

seq1  CTATGCCTTCTCAGTAGGGCCTGTGGTTCCCAGGGACACCTAAGAATACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCTTCTCAGTAGGGCCTGTGGTTCCCAGGGACACCTAAGAATACT  900

seq1  TGAGAATACCAAAAGTCCCTGTGAGCACTGGAGAAGATGTGGAAGTACTC  950
      |||||||||| |||||||||||||||||||||| |||||| |||||||||
seq2  TGAGAATACC-AAAGTCCCTGTGAGCACTGGAG-AGATGT-GAAGTACTC  947

seq1  GAGGTGCCTGAAAGCCTCATCAAAATCAGAGACATTGTGAGTAATGAGAT  1000
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  GAGGTGCCTGAAAGCCTCATC-AAATCAGAGACATTGTGAGT-ATGAGAT  995

seq1  GGCTCAAGGGTGGCTGAGAGGTCAAGATTCCCTAAGATTACCTCTAATAG  1050
      ||||||  ||| ||||||||||| ||||  ||||||| ||||||| ||| 
seq2  GGCTCA--GGT-GCTGAGAGGTC-AGAT--CCTAAGA-TACCTCT-ATA-  1036

seq1  TGCCAGAGAGCACCCGAGAGAGAGAGAGCTTGGGAGTATTGAAAATGCCT  1100
      || ||||||||| |||||||||| ||||||| |||||||    |||||||
seq2  TG-CAGAGAGCA-CCGAGAGAGA-AGAGCTT-GGAGTAT---GAATGCCT  1079

seq1  GGAAGAACCAAAGAGGTGGGAGC  1123
      |||| |||| |||||||||||||
seq2  GGAA-AACC-AAGAGGTGGGAGC  1100

seq1: chr9_25899073_25899936
seq2: B6Ng01-064L02.g_67_930 (reverse)

seq1  CAGTCAGAAGACTGGGTTCAGACTCAATTGATGGGCC-ACATGTCCCTCT  49
      ||||||||||| |||||||||| || | ||||||||| ||||||||||||
seq2  CAGTCAGAAGAATGGGTTCAGAATCCAATGATGGGCCAACATGTCCCTCT  50

seq1  CCCACAAACACTCATGGGACAAAGCTTAGCTTGTCTACAACAACCTTTGG  99
      ||||| |||||||||||||||||||||||||||||||||| ||| |||||
seq2  CCCAC-AACACTCATGGGACAAAGCTTAGCTTGTCTACAA-AACGTTTGG  98

seq1  ACCACATTTCCTCTAATGTCACTTTTTCCAGGTATAGGAGTCATTTCTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTTCCTCTAATGTCACTTTTTCCAGGTATAGGAGTCATTTCTTT  148

seq1  TCCTTTCCACCCCTCCAGCTCCCAGCTTG-AAGCTCCCCTTTTTTTCTCT  198
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTTTCCACCCCTCCAGCTCCCAGCTTGAAAGCTCCCCTTTTTTTCTCT  198

seq1  CCTTTTCAACACCAAAGTTACCTTTGTTTACACAAAAGTTCCAGAAAGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCAACACCAAAGTTACCTTTGTTTACACAAAAGTTCCAGAAAGTC  248

seq1  CATTGGTAAAAACTCTGCATTTAAAAATTTTAATTTAAATCTTTGTCACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTAAAAACTCTGCATTTAAAAATTTTAATTTAAATCTTTGTCACT  298

seq1  TGCAACAACAACAAAAAGATATATATCCATCTTTTTGAATGAGTTTTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAACAACAAAAAGATATATATCCATCTTTTTGAATGAGTTTTTTT  348

seq1  TTTTATTTATTTGGAGTTAAAAATTTCAGGTGTGCATCAGGAATCTCCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATTTGGAGTTAAAAATTTCAGGTGTGCATCAGGAATCTCCTG  398

seq1  CTGACCTCTCCAGGCCTTGGAGAGGACCCCAGTTTCCAGTGCCACGGCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTCCAGGCCTTGGAGAGGACCCCAGTTTCCAGTGCCACGGCAT  448

seq1  TGTAAACAATAACAATATTTGTATTTATTATTTGAAAAGCACACACACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACAATAACAATATTTGTATTTATTATTTGAAAAGCACACACACAC  498

seq1  ACACACACACACACACAGTATTTGGACCAGACATAGTAGGCATTTTAATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACAGTATTTGGACCAGACATAGTAGGCATTTTAATC  548

seq1  CCCCTTTAGCAAATGAGAGGATGAGAGCTCGCCATGATCACACATACCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTAGCAAATGAGAGGATGAGAGCTCGCCATGATCACACATACCCA  598

seq1  GTATTTTAGAGGTAGGACTCAAATCCAGGTCAAGGCTAGCAGCCCCTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAGAGGTAGGACTCAAATCCAGGTCAAGGCTAGCAGCCCCTTGA  648

seq1  AGCCTTCTGCATTGTGATCCAGGCAGAAATCTGAGCCAGCAAGCAAATTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTGCATTGTGATCCAGGCAGAAATCTGAGCCAGCAAGCAAATTG  698

seq1  GCTGGCAGGCTGTATCGCCTGCCTCTTTAGCCTGTGCTTCCATCTCTAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAGGCTGTATCGCCTGCCTCTTTAGCCTGTGCTTCCATCTCTAAG  748

seq1  GAAGTTGTTTATGCAGCCCCTCTCGAAGGGACATTGTTCGCGTCTATAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTTTATGCAGCCCCTCTCGAAGGGACATTGTTCGCGTCTATAAT  798

seq1  AATCACCCTACTAGTGACACTTGTTCGCCTTCTAAAGGTCCGCTTACAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCCTACTAGTGACACTTGTTCGCCTTCTAAAGGTCCGCTTACAGT  848

seq1  TTTCTTTCATGAATTC  864
      ||||||||||||||||
seq2  TTTCTTTCATGAATTC  864