BAC Information

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BAC

Clone NameB6Ng01-065G07
Chromosome9 (Build37)
Map Location 121,402,723 - 121,548,648
singlet/doubletdoublet
Overlap geneCck, Lyzl4
Upstream geneEif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4, Trak1
Downstream geneVipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065G07.bB6Ng01-065G07.g
ACCDH884883DH884884
length4771,127
definitionDH884883|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G07, 5' end.DH884884|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,548,172 - 121,548,648)(121,402,723 - 121,403,870)
sequence
gaattccaactccatccataggttggagggtcgcagggaggcctgagcag
atgttcaaagagtattcttttgttctttcttttgctcacctctctcttat
ctatcaccacgcctggccctgtggtgaggctaggcttgtcactgatggaa
acatgaactgtaccttagctttgcttgagcagaagatagagggatcttgt
agccccacttaggagctaagctcatggaactcagggtaggagacgccttg
aaatgactcgtggacgtagcagtggaactcaaggcccagacatgagatag
tttccctggttcctgaaggccggggcctagagctctggggagggctggtt
cctgacataagtgtcatctcaggtgaacattgagtgaacagacactgaga
tgggtcttggagaatggaattttattgcctggtgaacagtaaaggaaaga
aggcttggtgtgggtgagctcttcagg
gaattccagagctgggaggggatctggttcgctctgctctcatcttttct
ctacaatgagaggtttgggcacagaaagaaacattcaaagggcaaggcgc
agaatcgcccatgggattcatgggaaaggccttccaaagcggagaagctc
agcgttccaacagctacagaaaggtaagatagaactctccctgtgaggtc
agccccctgcttgcagtcaaggggacgctcttggccctttgaccctttcc
tcctgctctgtactgggggagaggtgcacaaggcctccggctcttttcag
atctcaggctgtctcagcgccgacccacttcctgcctgaggggttcccaa
ggtcagagcctggtggcccccagcagaagcgatagggcggatctaaggaa
tcttaccagcacttgattattattattttttaatgttgtcctaaaacggt
tttatatttcatccgaagacagtgtcaaaatcagttcagaaaagggtctg
ttagccggcttcccttaccaacgaggtaagccctccgcccacctcccctg
tgaacaccgcctgtctactgctcagcgctgtgcagcgtacctcagggaag
aaaagtgaaaatttttgctccttgtgcgtcctctgtttcctcctccctgc
cagtgctgaaaggatcaagattggagccgcagcagaagcctgacggggag
cggacacccttacctttgcggacctgctggatgtatcgcgctagcagtgc
gcccaggcgcgctcggggctcggccgtccgttccggagcacagcccgcag
ctgccttcggggcgcctcttgcgcccgctgctcacggggtccgtagcttc
tgcaggactaccggtgcgccagggcgccagcagctagactgccatcacca
cgcacagacttacgccgctcttcatggctatggaagcaaaggcgaggata
ttgaccaatatggctcagcgtgcttcagtctaagtcccgcaacgaagcgg
tgaagctgacatgggggctgcagccgggcataatggctaacgtagcaaac
gaagttctaaggcgcctgccccgcgaatatttctgcccggttttttgttt
tccccaacggagaacctgggaatcccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_121548172_121548648
seq2: B6Ng01-065G07.b_40_516 (reverse)

seq1  CCTGAAGAGCTCACCCACACCCTGCCTTCTTTCCTTTACTGTTCACCAGG  50
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  CCTGAAGAGCTCACCCACACCAAGCCTTCTTTCCTTTACTGTTCACCAGG  50

seq1  CAATAAAATTCCATTCTCCAAGACCCATCTCAGTGTCTGTTCACTCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAATTCCATTCTCCAAGACCCATCTCAGTGTCTGTTCACTCAATG  100

seq1  TTCACCTGAGATGACACTTATGTCAGGAACCAGCCCTCCCCAGAGCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGAGATGACACTTATGTCAGGAACCAGCCCTCCCCAGAGCTCTA  150

seq1  GGCCCCGGCCTTCAGGAACCAGGGAAACTATCTCATGTCTGGGCCTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCGGCCTTCAGGAACCAGGGAAACTATCTCATGTCTGGGCCTTGAG  200

seq1  TTCCACTGCTACGTCCACGAGTCATTTCAAGGCGTCTCCTACCCTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGCTACGTCCACGAGTCATTTCAAGGCGTCTCCTACCCTGAGTT  250

seq1  CCATGAGCTTAGCTCCTAAGTGGGGCTACAAGATCCCTCTATCTTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGCTTAGCTCCTAAGTGGGGCTACAAGATCCCTCTATCTTCTGCT  300

seq1  CAAGCAAAGCTAAGGTACAGTTCATGTTTCCATCAGTGACAAGCCTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAGCTAAGGTACAGTTCATGTTTCCATCAGTGACAAGCCTAGCC  350

seq1  TCACCACAGGGCCAGGCGTGGTGATAGATAAGAGAGAGGTGAGCAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAGGGCCAGGCGTGGTGATAGATAAGAGAGAGGTGAGCAAAAGA  400

seq1  AAGAACAAAAGAATACTCTTTGAACATCTGCTCAGGCCTCCCTGCGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAAGAATACTCTTTGAACATCTGCTCAGGCCTCCCTGCGACCC  450

seq1  TCCAACCTATGGATGGAGTTGGAATTC  477
      |||||||||||||||||||||||||||
seq2  TCCAACCTATGGATGGAGTTGGAATTC  477

seq1: chr9_121402723_121403870
seq2: B6Ng01-065G07.g_69_1195

seq1  GAATTCCAGAGCTGGGAGGGGATCTGGTTCGCTCTGCTCTCATCTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCTGGGAGGGGATCTGGTTCGCTCTGCTCTCATCTTTTCT  50

seq1  CTACAATGAGAGGTTTGGGCACAGAAAGAAACATTCAAAGGGCAAGGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATGAGAGGTTTGGGCACAGAAAGAAACATTCAAAGGGCAAGGCGC  100

seq1  AGAATCGCCCATGGGATTCATGGGAAAGGCCTTCCAAAGCGGAGAAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGCCCATGGGATTCATGGGAAAGGCCTTCCAAAGCGGAGAAGCTC  150

seq1  AGCGTTCCAACAGCTACAGAAAGGTAAGATAGAACTCTCCCTGTGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTCCAACAGCTACAGAAAGGTAAGATAGAACTCTCCCTGTGAGGTC  200

seq1  AGCCCCCTGCTTGCAGTCAAGGGGACGCTCTTGGCCCTTTGACCCTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTGCTTGCAGTCAAGGGGACGCTCTTGGCCCTTTGACCCTTTCC  250

seq1  TCCTGCTCTGTACTGGGGGAGAGGTGCACAAGGCCTCCGGCTCTTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCTGTACTGGGGGAGAGGTGCACAAGGCCTCCGGCTCTTTTCAG  300

seq1  ATCTCAGGCTGTCTCAGCGCCGACCCACTTCCTGCCTGAGGGGTTCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGCTGTCTCAGCGCCGACCCACTTCCTGCCTGAGGGGTTCCCAA  350

seq1  GGTCAGAGCCTGGTGGCCCCCAGCAGAAGCGATAGGGCGGATCTAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGCCTGGTGGCCCCCAGCAGAAGCGATAGGGCGGATCTAAGGAA  400

seq1  TCTTACCAGCACTTGATTATTATTATTTTTTAATGTTGTCCTAAAACGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAGCACTTGATTATTATTATTTTTTAATGTTGTCCTAAAACGGT  450

seq1  TTTATATTTCATCCGAAGACAGTGTCAAAATCAGTTCAGAAAAGGGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTCATCCGAAGACAGTGTCAAAATCAGTTCAGAAAAGGGTCTG  500

seq1  TTAGCCGGCTTCCCTTACCAACGAGGTAAGCCCTCCGCCCACCTCCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCGGCTTCCCTTACCAACGAGGTAAGCCCTCCGCCCACCTCCCCTG  550

seq1  TGAACACCGCCTGTCTACTGCTCAGCGCTGTGCAGCGTACCTCAGGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACCGCCTGTCTACTGCTCAGCGCTGTGCAGCGTACCTCAGGGAAG  600

seq1  AAAAGTGAAAA-TTTTGCTCCTTGTGCGTCCTCTGTTTCCTCCTCCCTGC  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAAAATTTTTGCTCCTTGTGCGTCCTCTGTTTCCTCCTCCCTGC  650

seq1  CAGTGCTGAAAGGATCAAGATTGGAGCCGCAGCAGAAGCCTGACGGGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGAAAGGATCAAGATTGGAGCCGCAGCAGAAGCCTGACGGGGAG  700

seq1  CGGACACCCTTACCTTTGCGGACCTGCTGGATGTATCGCGCTAGCAGTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACACCCTTACCTTTGCGGACCTGCTGGATGTATCGCGCTAGCAGTGC  750

seq1  GCCCAGGCGCGCTCGGGGCTC-GCCGTCCG-TCCGGAGCACAGCCCGCAG  797
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  GCCCAGGCGCGCTCGGGGCTCGGCCGTCCGTTCCGGAGCACAGCCCGCAG  800

seq1  CTGCCTTCGGGGCGCCTCTTGCGCCCGCTGCTCCACGGGGTCCGTAGCTT  847
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGCCTTCGGGGCGCCTCTTGCGCCCGCTGCT-CACGGGGTCCGTAGCTT  849

seq1  CTGCAGGGACTACCGGCTGCGCCAGGGCGCCAGCAGCTAGGACTGCCATC  897
      ||||| |||||||||| |||||||||||||||||||||| ||||||||||
seq2  CTGCA-GGACTACCGG-TGCGCCAGGGCGCCAGCAGCTA-GACTGCCATC  896

seq1  ACCACGCACAGACATACGCCGCTCTTCATGGCTATGGGAAGCAAAGGCGA  947
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  ACCACGCACAGACTTACGCCGCTCTTCATGGCTAT-GGAAGCAAAGGCGA  945

seq1  GGAGAGTGAACCAAAGACTGGCCTCAGCGTGCTCCAGCCCAAAGTCCCGC  997
      ||| | ||| | | |   ||| ||||||||||| |||  | |||||||||
seq2  GGATATTGACCAATA---TGG-CTCAGCGTGCTTCAG-TCTAAGTCCCGC  990

seq1  ACACAGAAGTCGGCTGAGGCTGAACATGGGGGCTGCAGCCGGGTCAGACT  1047
      | || |||| ||| ||| |||| |||||||||||||||||||| || | |
seq2  A-AC-GAAG-CGG-TGAAGCTG-ACATGGGGGCTGCAGCCGGG-CATAAT  1034

seq1  GGCTCAACCGTAGCCAAGCGAAGTTCCTAGATGCGCCCTGGCCACCGCGA  1097
      ||||  | ||||| ||| ||||||||  ||  ||| ||||  | ||||||
seq2  GGCT--AACGTAG-CAAACGAAGTTCTAAG--GCG-CCTG--CCCCGCGA  1076

seq1  TAATTTCTGCCTGGCTTTTGTGTTATCCACACCTG-GGACCTGGGAATCC  1146
        ||||||||| || |||| |||| ||| || | | | ||||||||||||
seq2  ATATTTCTGCCCGG-TTTTTTGTTTTCCCCAACGGAGAACCTGGGAATCC  1125

seq1  CG  1148
      ||
seq2  CG  1127