BAC Information

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BAC

Clone NameB6Ng01-065I11
Chromosome9 (Build37)
Map Location 117,593,317 - 117,724,351
singlet/doubletdoublet
Overlap geneLOC665840
Upstream geneRbms3
Downstream geneLOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4, Itga9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065I11.bB6Ng01-065I11.g
ACCDH884976DH884977
length1,177985
definitionDH884976|Mus musculus domesticus DNA, BAC clone: B6Ng01-065I11, 5' end.DH884977|Mus musculus domesticus DNA, BAC clone: B6Ng01-065I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,593,317 - 117,594,510)(117,723,364 - 117,724,351)
sequence
gaattcaagagataattttggtcttaggagcagatgatgactccgtacaa
gaaagactcaaagtacctaacgtacagcaggtagcagatctgaataggtt
cgaatgactaaagctctccccccaatccccattctcaacacactccattc
agaagcccagggtggcagaaggcacagtgagtcatgtgatttcttacgac
agaattcagtagtccagctagttacaagttgttgttgttttttttcccct
cctggcctgaaatatgaacgcaagggcaggaaatatgtctgtgtatcctc
tcaagaccttgcacggcgcccagcacatggaaagcatttgattgatcgaa
tgacgacatgaatgaacactagtttcaacctgatttatttgctcatatac
cctgccttgctctgcctcacattgatttttacattaaagaactatcatga
gaaatgtccaattagaacattatgacaattctgctaatggcgttcttagg
aggatgcagacatgtgtccttatagcacggagcagaaagacagcagggaa
tcaggattcaacaaagcaggtacctttaccttgcacagtaacaactaaga
tgtatgcaagaataccaaagaacattccagagtttccagaaccttcttgc
ctaagaagaccaaatgaagagggtccaatacgtatctcaggacttctcaa
aaactacttgcatttcttaatagaggagtagggagacaggggcttaggaa
atgccgctgagcttcagagcaagagtgtgaatgctaagcgactcctaaga
aaataaaaacaaagcacttgacaaacgctgagcgttctagcaatgctgag
taatggttctgccctccaacagagccacagattattaaacagtaacaagt
gaggacttgctcggccccatcagaataaacacggctccaagtgcctcaga
gctcgcacgcagcagtggggcttcagaagacacagtatgtacccccaccc
caacttgatgaattcccctgctccatctcatcttagtccctctttttccc
cctcctcacccctcctttgtctgtgctcctaactcgtgatccttacatat
gagaaaaaaattatccagtgtgagaccgcccatccattgactgagtatct
gagcaagccttaagtgtcttttttgct
gaattcagagttgccctaaagcaatcagccccctacctcagccttctttc
tgggtgctgggaccgcaggtctgagcctccattctggcttgaatgagttt
atctctgtttgaaactcaaaccgagaacactttgcatgctcagagctgtg
agtttattctgaatgcacaggctgtctttggtcatgtcctctggctctta
atgtcccctctgggtctcctgcagtcatgtttctgcatcccgtcttcagt
acttcagccatcctcatgaaggcagcaggcagctattcttccctgccccc
caccttttcctcccctctttctctgtgcactgggactgttgttgagccag
agccacgctggcttggtctgttcctttgcaacagcctgaaaagagaggtc
cttgctttgtccatggcttcactgcagggagatgagaatgtgttcgcacg
cccttcccccataccccttcagtgcccctcaaggccccttcttatttgtc
agcctgctttgacatggatacacactttaagcccaggagtgcccctctta
gacaccttaggcaatttcacaaagtgtgtgtccccaggagtttttccttc
gacttctgtgtctcacttagcctgtgaggcaaatcacatgggcgatattt
tagcaaaggcaacacacaacttgagagctacaaaacccaagtgaaaactc
attccttttagcagatatttcctggacacctcacaggcagcgtgcgctaa
aggtttgtctttgtcctggagtaccccgtgagactgtggaggagcggaga
gccccagcccgtgatcacagttcagtacgggacttgtgacagaggtgggt
ggggggctacctgttagaggggcgcggttctctgcctgtcttagttcatc
ccgaccttaccctgaattatttccagcctctcaactctctgtactgcatt
ttcctgtcagaaaagaaaaaagctgtcaagtttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_117593317_117594510
seq2: B6Ng01-065I11.b_41_1217

seq1  GAATTCAAGAGATAATTTTGGTCTTAGGAGCAGATGATGACTCCGTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGATAATTTTGGTCTTAGGAGCAGATGATGACTCCGTACAA  50

seq1  GAAAGACTCAAAGTACCTAACGTACAGCAGGTAGCAGATCTGAATAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTCAAAGTACCTAACGTACAGCAGGTAGCAGATCTGAATAGGTT  100

seq1  CGAATGACTAAAGCTCTCCCCCCAATCCCCATTCTCAACACACTCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGACTAAAGCTCTCCCCCCAATCCCCATTCTCAACACACTCCATTC  150

seq1  AGAAGCCCAGGGTGGCAGAAGGCACAGTGAGTCATGTGATTTCTTACGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCAGGGTGGCAGAAGGCACAGTGAGTCATGTGATTTCTTACGAC  200

seq1  AGAATTCAGTAGTCCAGCTAGTTACAAGTTGTTGTTGTTTTTTTTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAGTAGTCCAGCTAGTTACAAGTTGTTGTTGTTTTTTTTCCCCT  250

seq1  CCTGGCCTGAAATATGAACGCAAGGGCAGGAAATATGTCTGTGTATCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTGAAATATGAACGCAAGGGCAGGAAATATGTCTGTGTATCCTC  300

seq1  TCAAGACCTTGCACGGCGCCCAGCACATGGAAAGCATTTGATTGATCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCTTGCACGGCGCCCAGCACATGGAAAGCATTTGATTGATCGAA  350

seq1  TGACGACATGAATGAACACTAGTTTCAACCTGATTTATTTGCTCATATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGACATGAATGAACACTAGTTTCAACCTGATTTATTTGCTCATATAC  400

seq1  CCTGCCTTGCTCTGCCTCACATTGATTTTTACATTAAAGAACTATCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTGCTCTGCCTCACATTGATTTTTACATTAAAGAACTATCATGA  450

seq1  GAAATGTCCAATTAGAACATTATGACAATTCTGCTAATGGCGTTCTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCCAATTAGAACATTATGACAATTCTGCTAATGGCGTTCTTAGG  500

seq1  AGGATGCAGACATGTGTCCTTATAGCACGGAGCAGAAAGACAGCAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCAGACATGTGTCCTTATAGCACGGAGCAGAAAGACAGCAGGGAA  550

seq1  TCAGGATTCAACAAAGCAGGTACCTTTACCTTGCACAGTAACAACTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTCAACAAAGCAGGTACCTTTACCTTGCACAGTAACAACTAAGA  600

seq1  TGTATGCAAGAATACCAAAGAACATTCCAGAGTTTCCAGAACCTTCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCAAGAATACCAAAGAACATTCCAGAGTTTCCAGAACCTTCTTGC  650

seq1  CTAAGAAGACCAAATGAAGAGGGTCCAATACGTATCTCAGGACTTCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGACCAAATGAAGAGGGTCCAATACGTATCTCAGGACTTCTCAA  700

seq1  AAACTACTTGCATTTCTTAATAGAGGAGTAGGGAGACAGGGGCTTAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTTGCATTTCTTAATAGAGGAGTAGGGAGACAGGGGCTTAGGAA  750

seq1  ATGCCGCTGAGCTTCAGAGCAAGAGTGTGAATGCTAAGCGACTCCTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGCTGAGCTTCAGAGCAAGAGTGTGAATGCTAAGCGACTCCTAAGA  800

seq1  AAATAAAAACAAAGCACTTGACAAACGCTGAGCGTTCTAGCAATGCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAACAAAGCACTTGACAAACGCTGAGCGTTCTAGCAATGCTGAG  850

seq1  TAATGGTTCTGCCCTCCAACAGAGCCACAGATTATTAAACAGTAACAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTTCTGCCCTCCAACAGAGCCACAGATTATTAAACAGTAACAAGT  900

seq1  GAGGACTTGCTCGGCCCCATCAGAATAAACAACGGCTCCAAGTGCCTCAG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGGACTTGCTCGGCCCCATCAGAATAAAC-ACGGCTCCAAGTGCCTCAG  949

seq1  AGGCTCGCACGCAGCAGTGGGGCTTCAGAAGACACAGTATGTTACCCCCA  1000
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  A-GCTCGCACGCAGCAGTGGGGCTTCAGAAGACACAGTATG-TACCCCCA  997

seq1  CCCCAACTTGATGCATTCCCACTGCTCCATCTCCATCTTTGGTCCCTTCC  1050
      ||||||||||||| |||||| ||||||||||| |||| || ||||||  |
seq2  CCCCAACTTGATGAATTCCC-CTGCTCCATCT-CATC-TTAGTCCCT--C  1042

seq1  TTTCTTCCCCCCTCCTCACCCCTCCTCTGTCTGT-CTCCTAACCTCGTGA  1099
      ||  || ||||||||||||||||||| ||||||| ||||||| |||||||
seq2  TT--TTTCCCCCTCCTCACCCCTCCTTTGTCTGTGCTCCTAA-CTCGTGA  1089

seq1  TCTTTAACATATGAAAAAAAAATTATCCACAGTGAAGACAGCGCATCACA  1149
      || || |||||||| ||||||||||||||  ||| |||| || |||| ||
seq2  TCCTT-ACATATGAGAAAAAAATTATCCAGTGTG-AGACCGCCCATC-CA  1136

seq1  TTGACATAAGATACTGAGCAAAGCTTTAAAGTGTCCTTTTTTGCT  1194
      ||||| | ||   ||||||||  |||  |||||| ||||||||||
seq2  TTGAC-TGAGTATCTGAGCAAGCCTT--AAGTGT-CTTTTTTGCT  1177

seq1: chr9_117723364_117724351
seq2: B6Ng01-065I11.g_69_1053 (reverse)

seq1  TTAAACTTGACAGCCTCTCTCTTCTCCTGACAGGAAAATGCAGGTACAGA  50
      |||||||||||||| | | |||| | |||||||||||||||| |||||||
seq2  TTAAACTTGACAGCTTTTTTCTT-TTCTGACAGGAAAATGCA-GTACAGA  48

seq1  GAGCTGAGAGGCCTGGAAATAACTCAGGGTAAGGTCGGGAATGAAACTAA  100
      ||| ||||||| |||||||||| |||||||||||||||| ||| ||||||
seq2  GAGTTGAGAGG-CTGGAAATAATTCAGGGTAAGGTCGGG-ATG-AACTAA  95

seq1  GACAGGCAGAGAACCGCGCCCCTCTAACAGGTAGCCCCCCACCCACCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGAGAACCGCGCCCCTCTAACAGGTAGCCCCCCACCCACCTCT  145

seq1  GTCACAAGTCCCGTACTGAACTGTGATCACGGGCTGGGGCTCTCCGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGTCCCGTACTGAACTGTGATCACGGGCTGGGGCTCTCCGCTCC  195

seq1  TCCACAGTCTCACGGGGTACTCCAGGACAAAGAC-AACCCTTAGCGCACG  249
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  TCCACAGTCTCACGGGGTACTCCAGGACAAAGACAAACCTTTAGCGCACG  245

seq1  CTGCCTGTGAGGTGTCCAGGAAATATCTGCTAAAAGGAATGAGTTTTCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTGAGGTGTCCAGGAAATATCTGCTAAAAGGAATGAGTTTTCAC  295

seq1  TTGGG-TTTGTAGCTCTCAAGTTGTGTGTTGCCTTTGCTAAAATATCGCC  348
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTGTAGCTCTCAAGTTGTGTGTTGCCTTTGCTAAAATATCGCC  345

seq1  CATGTGATTTGCCTCACAGGCTAAGTGAGACACAGAAGTCGAAGGAAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATTTGCCTCACAGGCTAAGTGAGACACAGAAGTCGAAGGAAAAA  395

seq1  CTCCTGGGGACACACACTTTGTGAAATTGCCTAAGGTGTCTAAGAGGGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGGACACACACTTTGTGAAATTGCCTAAGGTGTCTAAGAGGGGC  445

seq1  ACTCCTGGGCTTAAAGTGTGTATCCATGTCAAAGCAGGCTGACAAATAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGGCTTAAAGTGTGTATCCATGTCAAAGCAGGCTGACAAATAAG  495

seq1  AAGGGGCCTTGAGGGGCACTGAAGGGGTATGGGGGAAGGGCGTGCGAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCCTTGAGGGGCACTGAAGGGGTATGGGGGAAGGGCGTGCGAACA  545

seq1  CATTCTCATCTCCCTGCAGTGAAGCCATGGACAAAGCAAGGACCTCTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCATCTCCCTGCAGTGAAGCCATGGACAAAGCAAGGACCTCTCTT  595

seq1  TTCAGGCTGTTGCAAAGGAACAGACCAAGCCAGCGTGGCTCTGGCTCAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTGTTGCAAAGGAACAGACCAAGCCAGCGTGGCTCTGGCTCAAC  645

seq1  AACAGTCCCAGTGCACAGAGAAAGAGGGGAGGAAAAGGTGGGGGGCAGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCCAGTGCACAGAGAAAGAGGGGAGGAAAAGGTGGGGGGCAGGG  695

seq1  AAGAATAGCTGCCTGCTGCCTTCATGAGGATGGCTGAAGTACTGAAGACG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGCTGCCTGCTGCCTTCATGAGGATGGCTGAAGTACTGAAGACG  745

seq1  GGATGCAGAAACATGACTGCAGGAGACCCAGAGGGGACATTAAGAGCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGAAACATGACTGCAGGAGACCCAGAGGGGACATTAAGAGCCAG  795

seq1  AGGACATGACCAAAGACAGCCTGTGCATTCAGAATAAACTCACAGCTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGACCAAAGACAGCCTGTGCATTCAGAATAAACTCACAGCTCTG  845

seq1  AGCATGCAAAGTGTTCTCGGTTTGAGTTTCAAACAGAGATAAACTCATTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCAAAGTGTTCTCGGTTTGAGTTTCAAACAGAGATAAACTCATTC  895

seq1  AAGCCAGAATGGAGGCTCAGACCTGCGGTCCCAGCACCCAGAAAGAAGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAATGGAGGCTCAGACCTGCGGTCCCAGCACCCAGAAAGAAGGC  945

seq1  TGAGGTAGGGGGCTGATTGCTTTAGGGCAACTCTGAATTC  988
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAGGGGGCTGATTGCTTTAGGGCAACTCTGAATTC  985