BAC Information

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BAC

Clone NameB6Ng01-065L18
Chromosome9 (Build37)
Map Location 28,326,413 - 28,437,961
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065L18.bB6Ng01-065L18.g
ACCDH885123DH885124
length1,1001,087
definitionDH885123|Mus musculus domesticus DNA, BAC clone: B6Ng01-065L18, 5' end.DH885124|Mus musculus domesticus DNA, BAC clone: B6Ng01-065L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,326,413 - 28,327,527)(28,436,851 - 28,437,961)
sequence
gaattctcacccgagcaataccgactggctgagaagcacctggaaaaatg
ttcagcatccttaatcatcacagaaatgaagacattttcttaatgaagat
tttctctttccagagatgttgaggtttgtgtcaagttgacaaaaaccaat
cagaatatccagttataaagacttagctgcttagtttgtttttgtggaat
caaagtaaacttaaagtatcttgtggataatacattttgcattttctgat
caaagtataaagagttaaaattatgttaaaaacgcatttattttataatt
cagaaataaacttgatataatatatgcatatatatgaacattatgtctta
acacaaaagagacagggtacttatagaataatgctataaaaatcttgctc
cagtttttcaatttgactatattattttggttaaaatttcaagttgctaa
ttctatatctaacattaagatgtgtctgccgagttcattgttagatataa
gatcttacaattatggaacttattacatgtcgaatggttgcaactaatct
tataattagtcttataattctccatttctcatttatttcaatctatcttt
ctgccatattgaaaaccaaagtacttgctaatatacaatgtttgtctact
aagtttaatagagatgtcacctgtatggtccatatgctcacacacatgcg
aatgcacacacacacacacacacacacacacacacacacacacacataaa
tgcacatttctattcacaactaattatattttcttttacctagtatggta
catgcctcatgttacatatgaaagaatcataagtttacaaatagtatttt
ccttaaaaggtttctgttccttttatgcataaatgtctgggacagaggct
ctacccagcagctgactcagacagatgcagacaccacaaccaaacagtgg
atggagtttggggactcttatgaaagagaagattgacatgcaaagtgtat
aggactctatagaatcaagaagtcactactggagctttagggtctcagag
aactgaacatcagtcaaagaacatacatggctggatctaggcctctccat

gaattcataaaagaactatattaagcctgggaacatttgacctgggtaga
tatgacagttctgttcataccaataaaaggctgtcatgcaaaagagaaag
atttattctgaagagataagtaaaatcactaggtagaatttctgagatga
gagaaattgcaagttcatctttcactaaaatcaaccatggaaatgcacca
tgatggatgggttgtgttcacatcccaaaacacttatttatcctgtactc
ctgctatgagcactaatgagtggcgaacgagtctatgccagaaacactgg
aaagtggttcccacactgcctcactagaccaaagcatttctgatccttct
gactctgaagttataaatctgtggcctatacggtcctgatgatcaccaag
ttaatgatttcacctacaggaattaacatccttcttcccagaacccagaa
ggtgcctttctttatttttttttttcctttgcaattcctccagtgtaaaa
gcatgtagttttagataatagcatcctaaataacagaaagaaattcttgt
tcatacacataggtatttctctttatggcacaatttgtgatgaagcctgg
ccatcattattacattatactcaagtctgattaaacaaatgaataagaac
cgggttaagtttgggatacaggtaaaattcacctggatctttcttaacct
gtgggtgttataggagaagtgagtgactcaggactctgacaacagagaaa
ttaggagaagatgaatatgtattttcatcctcttaagtgctgagaattca
tgaatcaggaggaaaggatgataggaagaatgtgtcactcaactaaatag
ggcaatttcatattgttctaaaatttcacaaaatgagtaacatttttctt
tttacacggtttgtgctagagattaaagaataaagaaggtgtcttaaaat
gcttattttttaataattttaaatttagtatgcaaagtacaaccctgctt
cagtgcttatcccactcctgacctctctctgcaagatctttccaatcatg
cctcattttgcttcaatcataatgcaacattcctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28326413_28327527
seq2: B6Ng01-065L18.b_48_1147

seq1  GAATTCTCACCCGAGCAATACCGACTGGCTGAGAAGCACCTGGAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCCGAGCAATACCGACTGGCTGAGAAGCACCTGGAAAAATG  50

seq1  TTCAGCATCCTTAATCATCACAGAAATGAAGACATTTTCTTAATGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATCCTTAATCATCACAGAAATGAAGACATTTTCTTAATGAAGAT  100

seq1  TTTCTCTTTCCAGAGATGTTGAGGTTTGTGTCAAGTTGACAAAAACCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCCAGAGATGTTGAGGTTTGTGTCAAGTTGACAAAAACCAAT  150

seq1  CAGAATATCCAGTTATAAAGACTTAGCTGCTTAGTTTGTTTTTGTGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATCCAGTTATAAAGACTTAGCTGCTTAGTTTGTTTTTGTGGAAT  200

seq1  CAAAGTAAACTTAAAGTATCTTGTGGATAATACATTTTGCATTTTCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAACTTAAAGTATCTTGTGGATAATACATTTTGCATTTTCTGAT  250

seq1  CAAAGTATAAAGAGTTAAAATTATGTTAAAAACGCATTTATTTTATAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATAAAGAGTTAAAATTATGTTAAAAACGCATTTATTTTATAATT  300

seq1  CAGAAATAAACTTGATATAATATATGCATATATATGAACATTATGTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAAACTTGATATAATATATGCATATATATGAACATTATGTCTTA  350

seq1  ACACAAAAGAGACAGGGTACTTATAGAATAATGCTATAAAAATCTTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGAGACAGGGTACTTATAGAATAATGCTATAAAAATCTTGCTC  400

seq1  CAGTTTTTCAATTTGACTATATTATTTTGGTTAAAATTTCAAGTTGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTCAATTTGACTATATTATTTTGGTTAAAATTTCAAGTTGCTAA  450

seq1  TTCTATATCTAACATTAAGATGTGTCTGCCGAGTTCATTGTTAGATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATCTAACATTAAGATGTGTCTGCCGAGTTCATTGTTAGATATAA  500

seq1  GATCTTACAATTATGGAACTTATTACATGTCGAATGGTTGCAACTAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTACAATTATGGAACTTATTACATGTCGAATGGTTGCAACTAATCT  550

seq1  TATAATTAGTCTTATAATTCTCCATTTCTCATTTATTTCAATCTATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAGTCTTATAATTCTCCATTTCTCATTTATTTCAATCTATCTTT  600

seq1  CTGCCATATTGAAAACCAAAGTACTTGCTAATATACAATGTTTGTCTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATATTGAAAACCAAAGTACTTGCTAATATACAATGTTTGTCTACT  650

seq1  AAGTTTAATAGAGATGTCACCTGTATGGTCCATATGCTCACACACATGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAATAGAGATGTCACCTGTATGGTCCATATGCTCACACACATGCG  700

seq1  AATGCACACACACACACACACACACACACACACACACACACACACATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACACACACACACACACACACACACACACACACACACACACATAAA  750

seq1  TGCACATTTCTATTCACAACTAATTATATTTTCTTTTACCTAGTATGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTTCTATTCACAACTAATTATATTTTCTTTTACCTAGTATGGTA  800

seq1  CATGCCTCATGTTACATATGAAAGAATCATAAGTTTACAAATAGTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCATGTTACATATGAAAGAATCATAAGTTTACAAATAGTATTTT  850

seq1  CCTTAAAAGGTTTTCTGTTCCTTTTATGCATAAATGTCTGGGACAGAGGC  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAAGG-TTTCTGTTCCTTTTATGCATAAATGTCTGGGACAGAGGC  899

seq1  TCTACCCAGCAGCTGACTCAGACAGATGCAGACACCCACAACCAAACAGT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTACCCAGCAGCTGACTCAGACAGATGCAGACA-CCACAACCAAACAGT  948

seq1  GGATGGAGTTTGGGGACTCTTATGAAAGGAGGAAGGATTGACATTGCAAA  1000
      ||||||||||||||||||||||||||| |||  | |||||||| ||||||
seq2  GGATGGAGTTTGGGGACTCTTATGAAA-GAG--AAGATTGACA-TGCAAA  994

seq1  GTGTATAGGAACTCTATAGGAATTCAAGAGAGTCAACTAACCTGGAGCCT  1050
      ||||||||| |||||||||  | |||||| |||| ||||  ||||||| |
seq2  GTGTATAGG-ACTCTATAG--AATCAAGA-AGTC-ACTA--CTGGAGCTT  1037

seq1  TAGGGGTCTCAGAG-ACTGAACCATCAGTCAAAGAACATACATGGGCTGG  1099
      || ||||||||||| |||||| ||||||||||||||||||||| ||||||
seq2  TA-GGGTCTCAGAGAACTGAA-CATCAGTCAAAGAACATACAT-GGCTGG  1084

seq1  ATCTAGGCCTCTCCAT  1115
      ||||||||||||||||
seq2  ATCTAGGCCTCTCCAT  1100

seq1: chr9_28436851_28437961
seq2: B6Ng01-065L18.g_69_1155 (reverse)

seq1  AAGAGAAAATGTTGGGATTCATGTGATATGAAAGCAAAAATGAGG-ATGA  49
      |||||  |||||| | ||| |||    ||  |||| ||||||||| ||||
seq2  AAGAG-GAATGTT-GCATT-ATG----ATTGAAGC-AAAATGAGGCATGA  42

seq1  TTTGGAAAGATCTTGGGAAGGAAGAAGAGGTCAGGGAAGTGGGATAAGGC  99
       ||||||||||||||   ||     ||||||||||  |||||||||| ||
seq2  -TTGGAAAGATCTTGCAGAG-----AGAGGTCAGG--AGTGGGATAA-GC  83

seq1  ACTGAAGCAGGGTTTGTTACTTTGCATACTAAATTTAAAAATTAATAAAA  149
      ||||||||||||||   ||||||||||||||||||| ||||||| |||||
seq2  ACTGAAGCAGGGTT--GTACTTTGCATACTAAATTT-AAAATTATTAAAA  130

seq1  AAATAAAGCATTTTAAGACACCTTCTTTTATATCTTTAATCTTCCTAGCA  199
      ||   |||||||||||||||||||| ||||| ||||||||||  ||||||
seq2  AA--TAAGCATTTTAAGACACCTTC-TTTAT-TCTTTAATCT--CTAGCA  174

seq1  CAATCTGTGTATAAAGAAAAATGTTACTCATTTTGTGAAATTTTTAGAAC  249
      ||| | ||||| |||||||||||||||||||||||||||| |||||||||
seq2  CAAACCGTGTAAAAAGAAAAATGTTACTCATTTTGTGAAA-TTTTAGAAC  223

seq1  AATATGAAATTGCCCTATTTTAGTTGAGTGACACATTTCTTCCTATCATC  299
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  AATATGAAATTGCCCTA-TTTAGTTGAGTGACACA-TTCTTCCTATCATC  271

seq1  CTTTCCT-CTGATTCATGAATTCTCAGCACTTAAGAGGATGAAAATACAT  348
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCTGATTCATGAATTCTCAGCACTTAAGAGGATGAAAATACAT  321

seq1  ATTCATCTTCT-CTAATTTCTCTGTTGTCAGAGT-CTGAGTCACTCACTT  396
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  ATTCATCTTCTCCTAATTTCTCTGTTGTCAGAGTCCTGAGTCACTCACTT  371

seq1  CTCCTATAACACCCACAGGTTAAGAAAGATCCAGGTGAATTTTACCTGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATAACACCCACAGGTTAAGAAAGATCCAGGTGAATTTTACCTGTA  421

seq1  TCCC-AACTTAACCCGGTTCTTATTCATTTGTTTAATCAGACTTGAGTAT  495
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACTTAACCCGGTTCTTATTCATTTGTTTAATCAGACTTGAGTAT  471

seq1  AATGTAATAATGATGGCCAGGCTTCATCACAAATTGTGCCATAAAGAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATAATGATGGCCAGGCTTCATCACAAATTGTGCCATAAAGAGAA  521

seq1  ATACCTATGTGTATGAACAAGAATTTCTTTCTGTTATTTAGGATGCTATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATGTGTATGAACAAGAATTTCTTTCTGTTATTTAGGATGCTATT  571

seq1  ATCTAAAACTACATGCTTTTACACTGGAGGAATTGCAAAGGAAAAAAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAACTACATGCTTTTACACTGGAGGAATTGCAAAGGAAAAAAAAA  621

seq1  AATAAAGAAAGGCACCTTCTGGGTTCTGGGAAGAAGGATGTTAATTCCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAAGGCACCTTCTGGGTTCTGGGAAGAAGGATGTTAATTCCTG  671

seq1  TAGGTGAAATCATTAACTTGGTGATCATCAGGACCGTATAGGCCACAGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAAATCATTAACTTGGTGATCATCAGGACCGTATAGGCCACAGAT  721

seq1  TTATAACTTCAGAGTCAGAAGGATCAGAAATGCTTTGGTCTAGTGAGGCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTTCAGAGTCAGAAGGATCAGAAATGCTTTGGTCTAGTGAGGCA  771

seq1  GTGTGGGAACCACTTTCCAGTGTTTCTGGCATAGACTCGTTCGCCACTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGAACCACTTTCCAGTGTTTCTGGCATAGACTCGTTCGCCACTCA  821

seq1  TTAGTGCTCATAGCAGGAGTACAGGATAAATAAGTGTTTTGGGATGTGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCTCATAGCAGGAGTACAGGATAAATAAGTGTTTTGGGATGTGAA  871

seq1  CACAACCCATCCATCATGGTGCATTTCCATGGTTGATTTTAGTGAAAGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCATCCATCATGGTGCATTTCCATGGTTGATTTTAGTGAAAGAT  921

seq1  GAACTTGCAATTTCTCTCATCTCAGAAATTCTACCTAGTGATTTTACTTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCAATTTCTCTCATCTCAGAAATTCTACCTAGTGATTTTACTTA  971

seq1  TCTCTTCAGAATAAATCTTTCTCTTTTGCATGACAGCCTTTTATTGGTAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAGAATAAATCTTTCTCTTTTGCATGACAGCCTTTTATTGGTAT  1021

seq1  GAACAGAACTGTCATATCTACCCAGGTCAAATGTTCCCAGGCTTAATATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAACTGTCATATCTACCCAGGTCAAATGTTCCCAGGCTTAATATA  1071

seq1  GTTCTTTTATGAATTC  1111
      ||||||||||||||||
seq2  GTTCTTTTATGAATTC  1087