BAC Information

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BAC

Clone NameB6Ng01-065O10
Chromosome9 (Build37)
Map Location 82,524,874 - 82,525,952
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr1b, LOC671392, 4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065O10.bB6Ng01-065O10.g
ACCDH885242DH885243
length1,2561,074
definitionDH885242|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O10, 5' end.DH885243|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctctctctctttttcttgtggcatgttttctgtaattaggatt
tccagtgttatttttcatagaagtggccagagtgggcacctatcctgatc
atagagggaaaactttcactcttttatgactgaatatctatactcccctc
tctctgtacacacacacacacacacacacacacacacacacacacacaca
cacacacacacatatacatatataccttttcctagatagcttttgtttta
ttgatttaatttccttctactcctttaaatttttattctattttttaaaa
tttcacatatggaacactgtatttacataatttctctcttccctttctca
actggactcctcccaatgtctttcctcagtctttctcaaacttctaataa
cttcttctaaaattatcattgctacagagacataaaagtaaacatgttta
tgttatatgtacatcacactgcgtacatttagagatgcttgttcatatgc
taaatacgaactacctgggattagataacctatcaggggccttgacctgg
aaaaaaaccaatttcccctatctcagcagtcattaattcctgtatcactt
catttagaggtgggaccttgtgaaattccccccatctatgttggcatgtt
cactggtgctatcattttgtaggtcttgttgaaagaaccatattgttgag
aattcatgggtgtagctttcctatctggaaggaggaaagggaatggggaa
atgatgtaatacattataatctcaaacaattaaagaaataattaaaagat
tatatgatatcatctagtaggaggcatcctggtcctctgactcttacata
gtgtttcttcctcctctaggatgttctcctagctttaggcacaggggttg
aattgcacatgtgccattgggacagcacatccacagccacttgttctctg
cattttgactagttggacattttttatagtttcaccctcacaaaaagctt
cttttatttcattccacttttggttagttaactgaatgttttaattatgg
aaacctgtttgaatttttttttctccatccattcaggagatagggggata
gatcatcactcactaaagaggtgcctgccagggtttttttcatcggttat
gtttattatggttggcacttaccaaaccgaaactcggggaagaagacgtt
gatgccataatccggaatgctgtggagacttcctatggatagattggagt
cagctc
gaattccaaaacactggcagccaggtgaacaaaaccagaacagcagagcg
tgaaaccaggctgaacaactctcagccagactgggtgaaggttgaatacc
taacgctagctccctcatcaccggcagagaagctgccacactgtccttca
ttccagaaagataaatatgcattggctgaagaaatccaactagaaagtgc
taggatctgggataccgaaacagtggaaaaatacaaggaacctaacactg
gaggactcagttagagcctcactcttttatgtgtccattaacttgaaact
tgaagcctcctccaggctacaagcagcttcataagactgggaagctaatg
aaatttaccaagctcaggaagttgtagtattcacaaggcccctctcagaa
ctataaaaacagtagatagttcctagagaaaggagatgctgtagctatct
gaggcacctacaagttgttcaggactctccaaggattcagattccatgtg
tcacgatacaggatggggtaaggctgtctgtgagggaactttaaatcact
catcctcctgccagtagtctctgaaccaggttcttacaaggaatcccagt
aaacttactggtttgctaaactggacttgagtaaaattgcttctttcatc
tacagttaatggcttgtctggcatcaatagatgtttctttccatctttcc
agtaaaatgtcacttggttcctgaaaagataccaacagaactgaggatga
aggggtggaaggggctttcatggcccgtgcaataagtgacaagatgtgca
actgaagctgatatggctgtctttcccatgtgagttgggatgttgtgcat
ctttgctgaaatacgggtgcatgatccttgtgatgagttatagaatgtga
aatcaagaccagtcatatgacagggaggaccttatgcgaatccaagatga
ccggtcttcttctacgtggtgtggggtggcacactaaacttgtacataga
tggtgcctaagaagtggtgctgttctctgcttccctaacggctatacaca
ggtgacgggcagtatttggctaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82524874_82525952
seq2: B6Ng01-065O10.g_69_1142

seq1  GAATTCCAAAACACTGGCAGCCAGGTGAACAAAACCAGAACAGCAGAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACACTGGCAGCCAGGTGAACAAAACCAGAACAGCAGAGCG  50

seq1  TGAAACCAGGCTGAACAACTCTCAGCCAGACTGGGTGAAGGTTGAATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAGGCTGAACAACTCTCAGCCAGACTGGGTGAAGGTTGAATACC  100

seq1  TAACGCTAGCTCCCTCATCACCGGCAGAGAAGCTGCCACACTGTCCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCTAGCTCCCTCATCACCGGCAGAGAAGCTGCCACACTGTCCTTCA  150

seq1  TTCCAGAAAGATAAATATGCATTGGCTGAAGAAATCCAACTAGAAAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAAGATAAATATGCATTGGCTGAAGAAATCCAACTAGAAAGTGC  200

seq1  TAGGATCTGGGATACCGAAACAGTGGAAAAATACAAGGAACCTAACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTGGGATACCGAAACAGTGGAAAAATACAAGGAACCTAACACTG  250

seq1  GAGGACTCAGTTAGAGCCTCACTCTTTTATGTGTCCATTAACTTGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCAGTTAGAGCCTCACTCTTTTATGTGTCCATTAACTTGAAACT  300

seq1  TGAAGCCTCCTCCAGGCTACAAGCAGCTTCATAAGACTGGGAAGCTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCTCCTCCAGGCTACAAGCAGCTTCATAAGACTGGGAAGCTAATG  350

seq1  AAATTTACCAAGCTCAGGAAGTTGTAGTATTCACAAGGCCCCTCTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACCAAGCTCAGGAAGTTGTAGTATTCACAAGGCCCCTCTCAGAA  400

seq1  CTATAAAAACAGTAGATAGTTCCTAGAGAAAGGAGATGCTGTAGCTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAACAGTAGATAGTTCCTAGAGAAAGGAGATGCTGTAGCTATCT  450

seq1  GAGGCACCTACAAGTTGTTCAGGACTCTCCAAGGATTCAGATTCCATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACCTACAAGTTGTTCAGGACTCTCCAAGGATTCAGATTCCATGTG  500

seq1  TCACGATACAGGATGGGGTAAGGCTGTCTGTGAGGGAACTTTAAATCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGATACAGGATGGGGTAAGGCTGTCTGTGAGGGAACTTTAAATCACT  550

seq1  CATCCTCCTGCCAGTAGTCTCTGAACCAGGTTCTTACAAGGAATCCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCTGCCAGTAGTCTCTGAACCAGGTTCTTACAAGGAATCCCAGT  600

seq1  AAACTTACTGGTTTGCTAAACTGGACTTGAGTAAAATTGCTTCTTTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACTGGTTTGCTAAACTGGACTTGAGTAAAATTGCTTCTTTCATC  650

seq1  TACAGTTAATGGCTTGTCTGGCATCAATAGATGTTTCTTTCCATCTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTAATGGCTTGTCTGGCATCAATAGATGTTTCTTTCCATCTTTCC  700

seq1  AGTAAAATGTCACTTGGTTCCTGAAAAGATACCAACAGAACTGAGGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATGTCACTTGGTTCCTGAAAAGATACCAACAGAACTGAGGATGA  750

seq1  AGGGGTGGAAGGGGC-TTCATGGCCCGTGCAATAAGTGACAAGATGTGCA  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGAAGGGGCTTTCATGGCCCGTGCAATAAGTGACAAGATGTGCA  800

seq1  ACTGAAGCTGATATGGCTGTCTTTCCCATGTGAGTTGGGATGGTGTGCAT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTGAAGCTGATATGGCTGTCTTTCCCATGTGAGTTGGGATGTTGTGCAT  850

seq1  CTTTGCTGAAATACGGGTGCATGATCCTTGTGATGAGTTATAGAATGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGAAATACGGGTGCATGATCCTTGTGATGAGTTATAGAATGTGA  900

seq1  AATCAAGACCAAGTCATATGACAGGGGAGGAACCTTATGGCGAATCCAAG  949
      |||||||||| |||||||||||| |||||| ||||||| |||||||||||
seq2  AATCAAGACC-AGTCATATGACA-GGGAGG-ACCTTAT-GCGAATCCAAG  946

seq1  ATGACC-GTCTTCTTCTACGTGGTGTGGGGTGGCACACTAACTTTGTAAC  998
      |||||| ||||||||||||||||||||||||||||||||||  |||| ||
seq2  ATGACCGGTCTTCTTCTACGTGGTGTGGGGTGGCACACTAAACTTGT-AC  995

seq1  AATTAGAGTGTGCCTATAGAGT-GTGCCTGTCTCTGCTTCCCTAACGGCT  1047
      |  ||||  |||||||   ||| ||||   ||||||||||||||||||||
seq2  A--TAGATGGTGCCTAAGAAGTGGTGCTGTTCTCTGCTTCCCTAACGGCT  1043

seq1  A-ATCCAGTGTAGCGGTCAGGTATTTGGCTAAG  1079
      | |  ||| ||  ||| || |||||||||||||
seq2  ATACACAG-GTGACGGGCA-GTATTTGGCTAAG  1074