BAC Information

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BAC

Clone NameB6Ng01-066A22
Chromosome15 (Build37)9 (Build37)
Map Location 92,727,310 - 92,728,46710,474,649 - 10,474,872
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMuc19, LOC100042529, Cntn1, Pdzrn4
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066A22.bB6Ng01-066A22.g
ACCDH885346DH885347
length1,149554
definitionDH885346|Mus musculus domesticus DNA, BAC clone: B6Ng01-066A22, 5' end.DH885347|Mus musculus domesticus DNA, BAC clone: B6Ng01-066A22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,727,310 - 92,728,467)(10,474,649 - 10,474,872)
sequence
gaattcactaaagctgatttgagagttttgaacgccttcaactattggat
ttcaaaactacgtggtaagtttgtttcgagttactctctgtcttctggga
aatgggaagttgacactaggctagctcagttccatcacctcaaaagccag
tcagaattctcaacttcttttattttcagtaacgatgattttcaccttgc
atctccatcctacctaacgacagaagcttcatcattgtgaatgcagaagg
aaaagacttttcttaaccaatttacacttttccctgagtcggcttgtatt
tccttgacatgatcttgtgcacacattaaggacagattttaacaaaggct
ttttataagctggcctgggactttggattgtcctcatgccttctacacca
gacagaattcaaatagaatccagtagatatcctgttttcctcccagcctc
cagcaacaaattttaggcaaattgcatggttcttctaggtagccacatct
tcccaatcaccactgtgttcctcgtctgagcgtgggcttacaggtgggac
cgcagcgggcttctcagagtggctatagcctgagggtaagttgcataact
ttaaaagttcttgatgtaacttcctcagaagtcaggactgttgacatctg
ctctcaccgccaagaaagggtccaggaatgagctcaaattaagcttgaaa
atggtggctgagaagttttagccttgggtgtgctatgggatgttttaatg
gactcgttgtgccttatgtacccatgggattctggtgccggagtccagaa
gactggttcatttcctctgccttaggaagcaggccctctgggtggtgagc
agcatctaaagtccatattcagaattgcccattgtccttcccatggaatc
tttatctctctgtgacacaaaggacaagcttcctttgagttaggtacttc
taccatggagactgtcttacaaactcttggccctaaatactgccaggtca
cagactttgaaatcaactcgaaaggtattgagaactcagaaagttttctg
gtgaactttcattctactgttaatttaaaattttattaaatgattcaaga
ttactagacaactggagaacattcggaagtaaattaatactccatgttt
ctgctgtcctggctggttctggtcactcctgctgactgatgctgattcag
cagaggcctggtggtttctgctgcatcgtgccactgctgctgattcattc
gtgtttggtgttctggcactacagaactggactgctggtatcctgacgat
ggaggttggagtggccccaaagaactacttctatatagatccatgtccct
ttgtcctatttaccatcttttctactctatctttggatggtgggctagaa
caggcagggatcaaagtgtttgataacccttattaaagtagattttgaaa
aatctaagcctccaaaaaactgttctatgaggaaaaataaagtagttttg
ggtttggtgagttgtctttttaaatgaaatgatgggaaaaattctcatca
aaaatatgatttgcatgaaaaatttaaaggccataaaggagcaaactaga
tgtgtgtgtttatgtgtgtgtgtgtttatgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgagcatgagagcgtgtgtgtgtgtgtgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_92727310_92728467
seq2: B6Ng01-066A22.b_46_1194

seq1  GAATTCACTAAAGCTGATTTGAGAGTTTTGAACGCCTTCAACTATTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAAGCTGATTTGAGAGTTTTGAACGCCTTCAACTATTGGAT  50

seq1  TTCAAAACTACGTGGTAAGTTTGTTTCGAGTTACTCTCTGTCTTCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACTACGTGGTAAGTTTGTTTCGAGTTACTCTCTGTCTTCTGGGA  100

seq1  AATGGGAAGTTGACACTAGGCTAGCTCAGTTCCATCACCTCAAAAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGTTGACACTAGGCTAGCTCAGTTCCATCACCTCAAAAGCCAG  150

seq1  TCAGAATTCTCAACTTCTTTTATTTTCAGTAACGATGATTTTCACCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTCTCAACTTCTTTTATTTTCAGTAACGATGATTTTCACCTTGC  200

seq1  ATCTCCATCCTACCTAACGACAGAAGCTTCATCATTGTGAATGCAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATCCTACCTAACGACAGAAGCTTCATCATTGTGAATGCAGAAGG  250

seq1  AAAAGACTTTTCTTAACCAATTTACACTTTTCCCTGAGTCGGCTTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTTTTCTTAACCAATTTACACTTTTCCCTGAGTCGGCTTGTATT  300

seq1  TCCTTGACATGATCTTGTGCACACATTAAGGACAGATTTTAACAAAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGACATGATCTTGTGCACACATTAAGGACAGATTTTAACAAAGGCT  350

seq1  TTTTATAAGCTGGCCTGGGACTTTGGATTGTCCTCATGCCTTCTACACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGCTGGCCTGGGACTTTGGATTGTCCTCATGCCTTCTACACCA  400

seq1  GACAGAATTCAAATAGAATCCAGTAGATATCCTGTTTTCCTCCCAGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATTCAAATAGAATCCAGTAGATATCCTGTTTTCCTCCCAGCCTC  450

seq1  CAGCAACAAATTTTAGGCAAATTGCATGGTTCTTCTAGGTAGCCACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAAATTTTAGGCAAATTGCATGGTTCTTCTAGGTAGCCACATCT  500

seq1  TCCCAATCACCACTGTGTTCCTCGTCTGAGCGTGGGCTTACAGGTGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATCACCACTGTGTTCCTCGTCTGAGCGTGGGCTTACAGGTGGGAC  550

seq1  CGCAGCGGGCTTCTCAGAGTGGCTATAGCCTGAGGGTAAGTTGCATAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCGGGCTTCTCAGAGTGGCTATAGCCTGAGGGTAAGTTGCATAACT  600

seq1  TTAAAAGTTCTTGATGTAACTTCCTCAGAAGTCAGGACTGTTGACATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTCTTGATGTAACTTCCTCAGAAGTCAGGACTGTTGACATCTG  650

seq1  CTCTCACCGCCAAGAAAGGGTCCAGGAATGAGCTCAAATTAAGCTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCGCCAAGAAAGGGTCCAGGAATGAGCTCAAATTAAGCTTGAAA  700

seq1  ATGGTGGCTGAGAAGTTTTAGCCTTGGGTGTGCTATGGGATGTTTTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCTGAGAAGTTTTAGCCTTGGGTGTGCTATGGGATGTTTTAATG  750

seq1  GACTCGTTGTGCCTTATGTACCCATGGGATTCTGGTGCCGGAGTCCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGTTGTGCCTTATGTACCCATGGGATTCTGGTGCCGGAGTCCAGAA  800

seq1  GACTGGTTCATTTCCTCTGCCTTAGGAAGCAGGCCCTCTGGGTGGTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTTCATTTCCTCTGCCTTAGGAAGCAGGCCCTCTGGGTGGTGAGC  850

seq1  AGCATCTAAAGTCCATATTCAGAATTGCCCATTGTCCTTCCCATGGAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTAAAGTCCATATTCAGAATTGCCCATTGTCCTTCCCATGGAATC  900

seq1  TTTATCTCTCTGTGACACAAAGGACAAGCTTCCTTTGAGTTAGGTACTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCTCTGTGACACAAAGGACAAGCTTCCTTTGAGTTAGGTACTTC  950

seq1  TACCATGGAGACTGTCTTACAAAACTCTTGGCCCTAAATACTGCCAGGTC  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TACCATGGAGACTGTCTTAC-AAACTCTTGGCCCTAAATACTGCCAGGTC  999

seq1  ACAGACTTTGAAATCAAACTCGAAAGGTATTGAG-ACCCAGAAAGTTTTC  1049
      ||||||||||||||| |||||||||||||||||| || ||||||||||||
seq2  ACAGACTTTGAAATC-AACTCGAAAGGTATTGAGAACTCAGAAAGTTTTC  1048

seq1  TGGTGAACTTTCATTTCTACTGTATATTTAAAATTTTATTAAATGATTTC  1099
      ||||||||||||| |||||||||  ||||||||||||||||||||| |||
seq2  TGGTGAACTTTCA-TTCTACTGTTAATTTAAAATTTTATTAAATGA-TTC  1096

seq1  AAGATTTACTAGACAACTTGAG-ACATTCGAGAAGTATAATTATATACTT  1148
      |||| ||||||||||||| ||| ||||||| |||||| ||||| ||||| 
seq2  AAGA-TTACTAGACAACTGGAGAACATTCG-GAAGTA-AATTA-ATACT-  1141

seq1  TCCCATGTTT  1158
        ||||||||
seq2  --CCATGTTT  1149

seq1: chr9_10474649_10474872
seq2: B6Ng01-066A22.g_462_626 (reverse)

seq1  CACACCACACACATGCACACACACTTGTATGCACACACACACACACCATA  50
                                     ||||||||||||||     
seq2  -------------------------------CACACACACACACA-----  14

seq1  CCACACCACATGCATGCACACACACTTGTATACACACACACACACACACA  100
                      ||||||| ||   || | ||||||||||||||||
seq2  ----------------CACACACGCTCTCATGCTCACACACACACACACA  48

seq1  CACATACACACACACACACACACACACACACACACACACACACACACACA  150
      |||| ||||||||||||||||||||||| | ||||||||||||| | |||
seq2  CACACACACACACACACACACACACACATAAACACACACACACATAAACA  98

seq1  CACACGTATA---TACACATATATGCACACACACACACACTTTGC-TGAA  196
      ||||| | ||   | | | | ||||      |    | | ||| | || |
seq2  CACACATCTAGTTTGCTCCTTTATG-----GCCTTTAAATTTTTCATGCA  143

seq1  TAGTCCAGAAGGCTGATTGATGAGAATT  224
       |   || |    |  ||||||||||||
seq2  AA--TCATA----TTTTTGATGAGAATT  165