BAC Information

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BAC

Clone NameB6Ng01-066D11
Chromosome9 (Build37)
Map Location 10,276,642 - 10,389,537
singlet/doubletdoublet
Overlap geneLOC665154, LOC100039970
Upstream geneCntn5
Downstream geneLOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066D11.bB6Ng01-066D11.g
ACCDH885453DH885454
length1,2081,128
definitionDH885453|Mus musculus domesticus DNA, BAC clone: B6Ng01-066D11, 5' end.DH885454|Mus musculus domesticus DNA, BAC clone: B6Ng01-066D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,388,316 - 10,389,537)(10,276,642 - 10,277,796)
sequence
gaattccttactttcattctaaattacaacaataaactattcactgcaag
agatgggaatctttcaataacatgaatacagtatgatcttcatgacccca
ctgtattggaacctgtttcaagctttgcctttcaaatatagagcccattc
caatacattaggtagaatctaagggagagttaggatttcaagatttgctc
acattgtctgagttacaactttacttaacacaaccttctcaattcagaca
caattaaaaatctgaaaagtattaggtggtaaggactgcaaaatctttta
atgttggcctttgtgaaattcttcccagagtccaggtagtataaacaaaa
ttaaggtgttttgaggataaataaagaacatcactataatattatagtag
agtaattttgttatctttggattcccttcagaattttgatagacattccc
gagataacccatttcctaagccgtaccatcatcttataccacaagaacag
actagggtatcattttgttattatttattattctgtctgtctatttattt
attcattcatttatttttattatatgtatatgagtgtttgcctacattaa
gacatgtatgcaacatgcatgaagtgcccttggagaccagaaaggaacaa
atgattcctggcagaagttaacagattcttagagcacaaacatggatggt
ggtaactgaatccagctcctctgaatgagcagaaagtgctctttctgacc
cgttgtcttaggtccaaatatataatataaaataactatgaatgctctgt
aatgcatcaagattagtcaattgactagtctgtgacaagcagaccaaaga
gttctgggaacttggaaagttctgaagagggattttttccaaatctcaat
tttcagaagttttatatatagcaaatattccaaacctggatccagtagat
ttgaggcatgatttctgatccacatctgtcccactgctgttgtatagtat
attaagcaatacaaatagtcaatctttcacagagcaactaagtacttaca
tgaatggcatagagacttggacccatggtgttcccactctgaagcctcag
tctgtctacatggcaggatactgcaatcaattaatctccctaggtattca
taactctagatgattttagtcaggtgcgctttgttaatgttcagggagaa
gaagagat
gaattcctttcttgaaaaaaaaatcgcattgagcaatttcctgaaaaatc
gtgccatactttaacttttttccctttttattttgaaatatattttcaaa
actttaaagatgtaaaatagattcttttcataccatatactctgattata
ttttctaatccctgagctccacccagctcctcctcatcttccctcccaca
caaatccacattctttctttctctcattagaaaacaaatcagcatctaaa
tattagtgagggaataattgaaaataaaaacaaacaagatggaataggat
gaaacaaacagacagaagcaaaggagccaaataaaaagcacaagaaacat
ataaacacagacacaaaagatgcattgaatactgaatggtattttaggaa
tatgtgtatggttattccaagacaattaaagaactcattttctacagttt
ttaaaaatgatgtgaagggtgtattttaatgaagtaattattatttgtgg
tcttctttggtgaatttcacatatcagaaaattaaacatgaaaatatatc
agatttttttcatcctttaatttctttacaactgagatgtatgaaataca
tttccttgttgcattcccaagctgggaggatgacctcaatgaagcaagga
tgaagtttcttgccattgagaggcagcctatctgtccaggactcagttct
gttcctgccactgacaagtagattggtcatgagtctcttactgtatcaat
gattgagtttcttcatgaaaaattatcattcattttagatttttcatagt
tgatttgagttgtaattgatttcatatttgtaagtgttcaatgataccag
agacacagtaagtgctatatacatagctataaagtctattgctctaccaa
caaacagagaacaaaatcatgacattttcaggaaaattcacatactgagt
atgataaatgtcagatcgtgcaatatatagcccatcattcttattataat
gaaatgcatacactcatggaatcatgctgtgctcatgaacaggccatttt
cacatattgacatacagcacctctgagagttttataatttagtacaaaag
agttagtgtaataaggaattctcaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_10388316_10389537
seq2: B6Ng01-066D11.b_43_1250 (reverse)

seq1  ATCTCTTC-TCTACCTGACATTTAACAAA-CGCAACTTGACTTAAAATCT  48
      |||||||| ||| |||||   |||||||| ||| || |||| ||||||| 
seq2  ATCTCTTCTTCTCCCTGAACATTAACAAAGCGC-ACCTGAC-TAAAATCA  48

seq1  ACTAGAGTTTATTGAAATTACCTAGTGGAGATTAATTGATTGCAGATTAC  98
       ||||||||   ||||  ||||||| ||||||||||||||||||| |  |
seq2  TCTAGAGTT--ATGAA--TACCTAG-GGAGATTAATTGATTGCAG-TATC  92

seq1  TTGCCATGTAGACAGACTGAGGCTTCAGAGTGAGAACACCATGGAGTCCA  148
       ||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  CTGCCATGTAGACAGACTGAGGCTTCAGAGTGGGAACACCATGG-GTCCA  141

seq1  AGTTCTCTATG-CAATCATGTAAGTACTTAGTTGCTTCTGTTGAAGGATT  197
      || |||||||| || |||||||||||||||||||| |||| |||| ||||
seq2  AG-TCTCTATGCCATTCATGTAAGTACTTAGTTGC-TCTG-TGAAAGATT  188

seq1  TGAACTATTTGTATTGCTTAATATACTATACAACAGCAGTGGGACAGATG  247
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --GACTATTTGTATTGCTTAATATACTATACAACAGCAGTGGGACAGATG  236

seq1  TGGGATCAGAAATCATGCCTCAAATCTACTGGATCCAGGTTTTGGAATAT  297
      | ||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  T-GGATCAGAAATCATGCCTCAAATCTACTGGATCCAGG-TTTGGAATA-  283

seq1  TTTGCTATATATAAAACTTCTGAAAATTGAGATTTGGAAAAAATCCCTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATATATAAAACTTCTGAAAATTGAGATTTGGAAAAAATCCCTCT  333

seq1  TCAGAACTTTCCAAGTTCCCAGAACTCTTTGGTCTGCTTGTCACAGACTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTTTCCAAGTTCCCAGAACTCTTTGGTCTGCTTGTCACAGACTA  383

seq1  GTCAATTGACTAATCTTGATGCATTACAGAGCATTCATAGTTATTTTATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTGACTAATCTTGATGCATTACAGAGCATTCATAGTTATTTTATA  433

seq1  TTATATATTTGGACCTAAGACAACGGGTCAGAAAGAGCACTTTCTGCTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTTGGACCTAAGACAACGGGTCAGAAAGAGCACTTTCTGCTCA  483

seq1  TTCAGAGGAGCTGGATTCAGTTACCACCATCCATGTTTGTGCTCTAAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGAGCTGGATTCAGTTACCACCATCCATGTTTGTGCTCTAAGAA  533

seq1  TCTGTTAACTTCTGCCAGGAATCATTTGTTCCTTTCTGGTCTCCAAGGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAACTTCTGCCAGGAATCATTTGTTCCTTTCTGGTCTCCAAGGGC  583

seq1  ACTTCATGCATGTTGCATACATGTCTTAATGTAGGCAAACACTCATATAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGCATGTTGCATACATGTCTTAATGTAGGCAAACACTCATATAC  633

seq1  ATATAATAAAAATAAATGAATGAATAAATAAATAGACAGACAGAATAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAAAAATAAATGAATGAATAAATAAATAGACAGACAGAATAATA  683

seq1  AATAATAACAAAATGATACCCTAGTCTGTTCTTGTGGTATAAGATGATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACAAAATGATACCCTAGTCTGTTCTTGTGGTATAAGATGATGG  733

seq1  TACGGCTTAGGAAATGGGTTATCTCGGGAATGTCTATCAAAATTCTGAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCTTAGGAAATGGGTTATCTCGGGAATGTCTATCAAAATTCTGAAG  783

seq1  GGAATCCAAAGATAACAAAATTACTCTACTATAATATTATAGTGATGTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCAAAGATAACAAAATTACTCTACTATAATATTATAGTGATGTTC  833

seq1  TTTATTTATCCTCAAAACACCTTAATTTTGTTTATACTACCTGGACTCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATCCTCAAAACACCTTAATTTTGTTTATACTACCTGGACTCTG  883

seq1  GGAAGAATTTCACAAAGGCCAACATTAAAAGATTTTGCAGTCCTTACCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATTTCACAAAGGCCAACATTAAAAGATTTTGCAGTCCTTACCAC  933

seq1  CTAATACTTTTCAGATTTTTAATTGTGTCTGAATTGAGAAGGTTGTGTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACTTTTCAGATTTTTAATTGTGTCTGAATTGAGAAGGTTGTGTTA  983

seq1  AGTAAAGTTGTAACTCAGACAATGTGAGCAAATCTTGAAATCCTAACTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTTGTAACTCAGACAATGTGAGCAAATCTTGAAATCCTAACTCT  1033

seq1  CCCTTAGATTCTACCTAATGTATTGGAATGGGCTCTATATTTGAAAGGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGATTCTACCTAATGTATTGGAATGGGCTCTATATTTGAAAGGCA  1083

seq1  AAGCTTGAAACAGGTTCCAATACAGTGGGGTCATGAAGATCATACTGTAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGAAACAGGTTCCAATACAGTGGGGTCATGAAGATCATACTGTAT  1133

seq1  TCATGTTATTGAAAGATTCCCATCTCTTGCAGTGAATAGTTTATTGTTGT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTATTGAAAGATTCCCATCTCTTGCAGTGAATAGTTTATTGTTGT  1183

seq1  AATTTAGAATGAAAGTAAGGAATTC  1222
      |||||||||||||||||||||||||
seq2  AATTTAGAATGAAAGTAAGGAATTC  1208

seq1: chr9_10276642_10277796
seq2: B6Ng01-066D11.g_70_1197

seq1  GAATTCCTTTCTTGAAAAAAAAATCGCATTGAGCAATTTCCTGAAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTTGAAAAAAAAATCGCATTGAGCAATTTCCTGAAAAATC  50

seq1  GTGCCATACTTTAACTTTTTTCCCTTTTTATTTTGAAATATATTTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATACTTTAACTTTTTTCCCTTTTTATTTTGAAATATATTTTCAAA  100

seq1  ACTTTAAAGATGTAAAATAGATTCTTTTCATACCATATACTCTGATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGATGTAAAATAGATTCTTTTCATACCATATACTCTGATTATA  150

seq1  TTTTCTAATCCCTGAGCTCCACCCAGCTCCTCCTCATCTTCCCTCCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATCCCTGAGCTCCACCCAGCTCCTCCTCATCTTCCCTCCCACA  200

seq1  CAAATCCACATTCTTTCTTTCTCTCATTAGAAAACAAATCAGCATCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCACATTCTTTCTTTCTCTCATTAGAAAACAAATCAGCATCTAAA  250

seq1  TATTAGTGAGGGAATAATTGAAAATAAAAACAAACAAGATGGAATAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTGAGGGAATAATTGAAAATAAAAACAAACAAGATGGAATAGGAT  300

seq1  GAAACAAACAGACAGAAGCAAAGGAGCCAAATAAAAAGCACAAGAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACAGACAGAAGCAAAGGAGCCAAATAAAAAGCACAAGAAACAT  350

seq1  ATAAACACAGACACAAAAGATGCATTGAATACTGAATGGTATTTTAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAGACACAAAAGATGCATTGAATACTGAATGGTATTTTAGGAA  400

seq1  TATGTGTATGGTTATTCCAAGACAATTAAAGAACTCATTTTCTACAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATGGTTATTCCAAGACAATTAAAGAACTCATTTTCTACAGTTT  450

seq1  TTAAAAATGATGTGAAGGGTGTATTTTAATGAAGTAATTATTATTTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGATGTGAAGGGTGTATTTTAATGAAGTAATTATTATTTGTGG  500

seq1  TCTTCTTTGGTGAATTTCACATATCAGAAAATTAAACATGAAAATATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGGTGAATTTCACATATCAGAAAATTAAACATGAAAATATATC  550

seq1  AGATTTTTTTCATCCTTTAATTTCTTTACAACTGAGATGTATGAAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTCATCCTTTAATTTCTTTACAACTGAGATGTATGAAATACA  600

seq1  TTTCCTTGTTGCATTCCCAAGCTGGGAGGATGACCTCAATGAAGCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTTGCATTCCCAAGCTGGGAGGATGACCTCAATGAAGCAAGGA  650

seq1  TGAAGTTTCTTGCCATTGAGAGGCAGCCTATCTGTCCAGGACTCAGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTCTTGCCATTGAGAGGCAGCCTATCTGTCCAGGACTCAGTTCT  700

seq1  GTTCCTGCCACTGACAAGTAGATTGGTCATGAGTCTCTTACTGTATCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCCACTGACAAGTAGATTGGTCATGAGTCTCTTACTGTATCAAT  750

seq1  GATTGAGTTTCTTCATGAAAAATTATCATTCATTTTAGATTTTTCATAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGTTTCTTCATGAAAAATTATCATTCATTTTAGATTTTTCATAGT  800

seq1  TGATTTGAGTTGTAATTGATTTCATATTTGTAAGTGTTCAATGATACCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGAGTTGTAATTGATTTCATATTTGTAAGTGTTCAATGATACCAG  850

seq1  AGACACAGTAAGTGCTATATACATAGCTATAAAGTCTATTGCTCTACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGTAAGTGCTATATACATAGCTATAAAGTCTATTGCTCTACCAA  900

seq1  ACAAAACAGAGAACAAAATCATGACATTTTTCAGGAAAAATTCACATACT  950
         ||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  --CAAACAGAGAACAAAATCATGACA-TTTTCAGG-AAAATTCACATACT  946

seq1  GAGTATGATAAATGTCAGATCGTGCAAATAATATAGCCCATCATTCTTAT  1000
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  GAGTATGATAAATGTCAGATCGTGCAA--TATATAGCCCATCATTCTTAT  994

seq1  TATAATGAAATGCATACACTCATGGAATCATGCTGTGCCTCAATGAACAG  1050
      ||||||||||||||||||||||||||||||||||||| ||| ||||||| 
seq2  TATAATGAAATGCATACACTCATGGAATCATGCTGTG-CTC-ATGAACA-  1041

seq1  GGCCATTTTCACATATTTGAACATTACAGCAACTCTGAAGATGTTTTATT  1100
      |||||||||||||||||   ||| ||||||| ||||| ||| ||||||| 
seq2  GGCCATTTTCACATATT--GACA-TACAGCACCTCTG-AGA-GTTTTAT-  1085

seq1  AAATTTTAGGATAACAAAAAAGAGTTAGTGGAAATAAAGGGAATTTCTCC  1150
       ||||      ||  | |||||||||||| | |||||  |||| |||| |
seq2  -AATT------TAGTACAAAAGAGTTAGT-GTAATAA--GGAA-TTCT-C  1123

seq1  AGGAA  1155
      |||||
seq2  AGGAA  1128