BAC Information

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BAC

Clone NameB6Ng01-066J21
Chromosome9 (Build37)
Map Location 52,152,607 - 52,153,800
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c
Downstream geneLOC100042876, AI593442, Gm1715, Ddx10, Exph5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066J21.bB6Ng01-066J21.g
ACCDH885747DH885748
length9151,160
definitionDH885747|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J21, 5' end.DH885748|Mus musculus domesticus DNA, BAC clone: B6Ng01-066J21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacaattggaaaaccagttgtgcttagacattttcccacctgcc
attcttgtctccttgcaaacacagaacctggaggccgtaagcataacacc
agtaaaatggtggaatcagtaatgatatggcattcttgtgatgactggga
gagagacttcagcatccctgtggcactctgggcactctggtggtcaaaga
agtatgagagaggaagacagaagtgggccaactggagaacaccagttgta
ctcacttggtgatagagttcaaatgaagagatcaggggacccatgaggca
cctcagcaggaaaagcacttgcttctcaagccagatgtcttcagttccat
ccctgaaatcaatgatgggagtagaaccaattccccagaactattctctg
atttcacacatgtaccctggcacatggactcctgtacttgaagacaaata
tcatacaaacacaaaaatgatgatgatggtagtggtagtggtgatcaaat
acacacatgataatgatgacaacgatgatggtgatgatggtgaagtgaac
attttttttcttataaaaaacaacatttaattggggctgccttacaggtt
cagaggttcagtccattatcatcaagttgggaacatggcagcatccaggc
aggcatgacacaggcagagctgagagttctacgtcttcatccaaaggctg
ctagtagaagattgacttccaaggcaactagggtgaggatcttaagccca
cacccacagtgacactcctactccaaccaggtcacacctattccaacaag
gccacacctccaaatagtgccactccctggtccaagaatatacaaaccat
gacattccattccctggtcccatagacttgtccaaacacatgagtctggt
gggggtgggggtggg

gaattcatcagtgacttatgatggaagggtgagcaagtcattattaggaa
aggaatcagtgtagtgtagctggggtccagaagaagctagataaactgct
ggagggaaaaatgtcatcagtggtcctaaccactagtgactccaaagact
accagaatgtcctgccaaacaagagttgctaactggtggaacagtgccaa
gaccatcacaggagtaaccagctgctttctgttttgagattgggtcttga
ggagggaactgtcttgtactgtaaaactgaccaagaacctgtagctggca
aggtcacaggtcatagacaagatagtgttgttttgggaactggcaatgtc
aaactgccttctaaatatttaacccttgattagtgctacccttagccttc
atcggagaaacctaattcttgtatggattctgtttgatgcatagctccat
agctggtcaaagtgtagagaataaatgatagtggagtgcccaactctaaa
caggacagacagttacatcatctactttcaaggctcagtgaacattttaa
agaaggggcagagaggttgggaatccttggtatgaaatactgtcttctgg
ccatgccaaagcatgaaccttcctgaactcattgttacctgcacaagatt
gggcccaccaccattttatcatgtgtaggggagggagttatgaagctcta
cctctcactaagagacagtgtgcagttactagttttgggtcaagttaata
ggtttttattcggtagtgtagcccctggtaagttgtctatgtaaacaaca
actgcgccagctcatgcaagcagccataactaaactttgtgattagaagg
aaaaaggatagcaaagaaagaagagggtttttgggaaaagaaagggtcca
gagtgagaaagaaaggatgatgggaagtatagtgacaaaaatgagtatat
acatcatgaaatgtcaaagatattttaatgatgaatctctagtacacata
gtataactaattttgggagtgagtagaaagaaaaagtgcaggtacactta
aagatgctttaacctgaagaaatcccagagagaaggaatctttgtacctt
acttgctagcagcatgtctcctgcttcttttccacataaccactcatgtg
gttcctcgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52152607_52153800
seq2: B6Ng01-066J21.g_67_1226

seq1  GAATTCATCAGTGACTTATGATGGAAGGGTGAGCAAGTCATTATTAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTGACTTATGATGGAAGGGTGAGCAAGTCATTATTAGGAA  50

seq1  AGGAATCAGTGTAGTGTAGCTGGGGTCCAGAAGAAGCTAGATAAACTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCAGTGTAGTGTAGCTGGGGTCCAGAAGAAGCTAGATAAACTGCT  100

seq1  GGAGGGAAAAATGTCATCAGTGGTCCTAACCACTAGTGACTCCAAAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAAAATGTCATCAGTGGTCCTAACCACTAGTGACTCCAAAGACT  150

seq1  ACCAGAATGTCCTGCCAAACAAGAGTTGCTAACTGGTGGAACAGTGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATGTCCTGCCAAACAAGAGTTGCTAACTGGTGGAACAGTGCCAA  200

seq1  GACCATCACAGGAGTAACCAGCTGCTTTCTGTTTTGAGATTGGGTCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCACAGGAGTAACCAGCTGCTTTCTGTTTTGAGATTGGGTCTTGA  250

seq1  GGAGGGAACTGTCTTGTACTGTAAAACTGACCAAGAACCTGTAGCTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAACTGTCTTGTACTGTAAAACTGACCAAGAACCTGTAGCTGGCA  300

seq1  AGGTCACAGGTCATAGACAAGATAGTGTTGTTTTGGGAACTGGCAATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACAGGTCATAGACAAGATAGTGTTGTTTTGGGAACTGGCAATGTC  350

seq1  AAACTGCCTTCTAAATATTTAACCCTTGATTAGTGCTACCCTTAGCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCCTTCTAAATATTTAACCCTTGATTAGTGCTACCCTTAGCCTTC  400

seq1  ATCGGAGAAACCTAATTCTTGTATGGATTCTGTTTGATGCATAGCTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGAGAAACCTAATTCTTGTATGGATTCTGTTTGATGCATAGCTCCAT  450

seq1  AGCTGGTCAAAGTGTAGAGAATAAATGATAGTGGAGTGCCCAACTCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCAAAGTGTAGAGAATAAATGATAGTGGAGTGCCCAACTCTAAA  500

seq1  CAGGACAGACAGTTACATCATCTACTTTCAAGGCTCAGTGAACATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGACAGTTACATCATCTACTTTCAAGGCTCAGTGAACATTTTAA  550

seq1  AGAAGGGGCAGAGAGGTTGGGAATCCTTGGTATGAAATACTGTCTTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGCAGAGAGGTTGGGAATCCTTGGTATGAAATACTGTCTTCTGG  600

seq1  CCATGCCAAAGCATGAACCTTCCTGAACTCATTGTTACCTGCACAAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAAAGCATGAACCTTCCTGAACTCATTGTTACCTGCACAAGATT  650

seq1  GGGCCCACCACCATTTTATCATGTGTAGGGGAGGGAGTTATGAAGCTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCACCACCATTTTATCATGTGTAGGGGAGGGAGTTATGAAGCTCTA  700

seq1  CCTCTCACTAAGAGACAGTGTGCAGTTACTAGTTTTGGGTCAAGTTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACTAAGAGACAGTGTGCAGTTACTAGTTTTGGGTCAAGTTAATA  750

seq1  GGTTTTTATTCGGTAGTGTAGCCCCTGGTAAGTTGTCTATGTAAACAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTATTCGGTAGTGTAGCCCCTGGTAAGTTGTCTATGTAAACAACA  800

seq1  ACTGCGCCAGCTCATGCAAGCAGCCATAACTAAACTTTGTGATTAGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGCCAGCTCATGCAAGCAGCCATAACTAAACTTTGTGATTAGAAGG  850

seq1  AAAAAGGATAGCAAAGAAGGAAGAGGGTTTTTGGGAAAAAGAAAGGGTCC  900
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  AAAAAGGATAGCAAAGAAAGAAGAGGGTTTTTGGG-AAAAGAAAGGGTCC  899

seq1  AGAGGTGAGAAAGAAAGGATGATGGGAAGTAGAAGTGACCAAAAATTGAG  950
      ||| |||||||||||||||||||||||||||  ||||||  |||| ||||
seq2  AGA-GTGAGAAAGAAAGGATGATGGGAAGTA-TAGTGAC--AAAAATGAG  945

seq1  TATATACATCATGAAAATGTCAAAAGATAATTTTAAATGAATGAATCCTC  1000
      ||||||||||||| ||||||| |||||||  ||| |||| |||||| |||
seq2  TATATACATCATG-AAATGTC-AAAGATA--TTTTAATG-ATGAAT-CTC  989

seq1  TAGTAACACATAGTATTAACTAATTTTGGTAATGAGTTAGAAAAGAAAAA  1050
      |||| |||||||||| ||||||||||||| | |||| ||||||   ||||
seq2  TAGT-ACACATAGTA-TAACTAATTTTGGGAGTGAG-TAGAAA--GAAAA  1034

seq1  AGTGCAGGTACCACTTAAAGATGCTTTAAACTTGAGGAAAACCCAGGAGA  1100
      |||||||||| |||||||||||||||| ||| ||| |||| |||| ||||
seq2  AGTGCAGGTA-CACTTAAAGATGCTTT-AACCTGAAGAAATCCCA-GAGA  1081

seq1  GAAAGGATTCTATGTACCCTACACTTGCCTAAGCCAGCCATGCTTCCCTG  1150
      | ||||| ||| |||||| |  ||||| |||   ||| |||| |  ||||
seq2  G-AAGGAATCTTTGTACCTT--ACTTG-CTA--GCAG-CATG-TCTCCTG  1123

seq1  CTCCTTTCCCCACCAGTAAACCCACTCATGTGGTTCTCCTCGAT  1194
      || ||||  ||||    | | |||||||||||||  ||||||||
seq2  CTTCTTT-TCCAC----ATAACCACTCATGTGGT--TCCTCGAT  1160


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