BAC Information

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BAC

Clone NameB6Ng01-066L09
Chromosome9 (Build37)
Map Location 74,844,884 - 74,995,798
singlet/doubletdoublet
Overlap geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501
Upstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1
Downstream geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066L09.bB6Ng01-066L09.g
ACCDH885815DH885816
length1,0311,056
definitionDH885815|Mus musculus domesticus DNA, BAC clone: B6Ng01-066L09, 5' end.DH885816|Mus musculus domesticus DNA, BAC clone: B6Ng01-066L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,844,884 - 74,845,928)(74,994,739 - 74,995,798)
sequence
gaattcagtgtcccagagaccagaagaggacatcagatctcctggagctg
ccttaacaaccatctgatgtcctcctctggcgtgcaagtgtatattcaga
tatagcacttatatacataaaataaataactaaataaaatttattgtaaa
tctaggcatggtggcgacagaagtgatctgagtacttggtaggttgaggc
aggaggattgcgtgagctcgcctgagccactgtaagttctagttaccctg
agctacatactgagactgtctcaaaaaacaaaagggaataaaagaaaaaa
actgatttacaaatgagaatagagccagcaagatggctaggaggtcaggg
catctcgtttcaagcctggcagcctgagttcagctccctggtagtggggt
cttatctcctgaaagctgtcctctgaccttcatacttcgtggaatacatg
tgcatacatattcatatacaaagtaaaaatgtaaaagcaaccaccaccac
aacaacaaaaaaaacaccctgaaccaaccaaccaaccatgctagcctaaa
agtaaatcatttacatgtatctgcacttctgaggcttccactctatttga
gtggatccagataatgcagatttcttctgccagaagggcttgctttaaca
tctttggtcatatatgtcttccacaggtgaattgtctcaggatggttgct
ttcacatctcttgtcatgcatgccttctgcacgtgaattgtctcaggatt
gctgtgtatgttgtgctttgttttggagacaaaccctgaccacccttctc
gtatctttcctctcattaatggggacagctcaactctgcttcttcctgcg
ctcagcatggaaatctgttcccattccatgtagaggtgcccaccctaggt
tgcatacgatacgtagtgagagagtacccctatcctcttcactgcttagg
atggaaactgacagtaggttacagtttctgaaggggaaggtttccttcag
cttgtaccaggaaagaaaaggaagcctgtgg
gaattcaaaaggaaagtttgtagaagaatcttattcaagaaagaaaattc
ttaccatgttgaattgttgttgtagtttttcatttgcataatttatgcag
aactgttcaaaactatttatttcaaatgtttcaaatctgtaataccaaaa
atataaggtaggaagaaaagaaaaagaacagttttaaaaaaatatttaaa
atatgcacacttgaaagagaaaaatgtgaagtctcttaacattatcttct
ccatatctgataaaagtctgtaagttggagagtcagcacaggatgagcat
cagctgagacagtcctgcctaaggatgtatagccttggctttttgaggcc
ccttcatatccagtaggaaacaacaaatcaatgctaaagcaacagttcct
gtcaatttatactccaaacatttcacagagaagtgggaggtagaaacaga
aacctaacaggttcttctgaaaatctgaaccagagagtgaaaaattagct
gccaaacaagtccatgtacaaaaaatatcaatgttacagaatgcaactag
aaatgaaatcatatttttagaaattcaataatttgccatataagagtgtg
aaaaccaattaattcaatctattagctttgtagatagattctggagctga
gttaatttttgtttaagcaatgtgtaagggttttttttttttttgcatca
ttatatctccattatcaaagacacttctgaatggttataagttaggattt
ccttctcttctccagtagaaaacaaaattaaacagtgctcagaggtacaa
aatacccccaaacaaacaactgctttccagcagagtagggcagccagcca
aatgcactcacccatagatgtccagcacgccgatgaaagagtgctgcttg
acagcagaatggagagcctgattgacgtggtcaacaatccagtaagagct
ttgcatagatggtgctttgctaagcatctcgggcatttgtggcctgcagc
ttggagatgggcttgatgaatgtttctgtggcagtagcagctttcgtggc
ggagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_74844884_74845928
seq2: B6Ng01-066L09.b_42_1072

seq1  GAATTCAGTGTCCACAGAGACCAGAAGAGGACATCAGATCTCCTGGAGCT  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCC-CAGAGACCAGAAGAGGACATCAGATCTCCTGGAGCT  49

seq1  GCCTTAACAACCATCTGATGTCCTCCTCTGGCGTGCAAGTGTATATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAACAACCATCTGATGTCCTCCTCTGGCGTGCAAGTGTATATTCAG  99

seq1  ATATAGCACTTATATACATAAAATAAATAACTAAATAAAATTTATTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCACTTATATACATAAAATAAATAACTAAATAAAATTTATTGTAA  149

seq1  ATCTAGGCATGGTGGCGACAGAAGTGATCTGAGTACTTGGTAGGTTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGCATGGTGGCGACAGAAGTGATCTGAGTACTTGGTAGGTTGAGG  199

seq1  CAGGAGGATTGCGTGAGCTCGCCTGAGCCACTGTAAGTTCTAGTTACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGATTGCGTGAGCTCGCCTGAGCCACTGTAAGTTCTAGTTACCCT  249

seq1  GAGCTACATACTGAGACTGTCTCAAAAAACAAAAGGGAATAAAAGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACATACTGAGACTGTCTCAAAAAACAAAAGGGAATAAAAGAAAAA  299

seq1  AACTGATTTACAAATGAGAATAGAGCCAGCAAGATGGCTAGGAGGTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTACAAATGAGAATAGAGCCAGCAAGATGGCTAGGAGGTCAGG  349

seq1  GCATCTCGTTTCAAGCCTGGCAGCCTGAGTTCAGCTCCATGGTAGTGGGG  400
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCATCTCGTTTCAAGCCTGGCAGCCTGAGTTCAGCTCCCTGGTAGTGGGG  399

seq1  TCTTATCTCCTGAAAGCTGTCCTCTGACCTTCATACTTCGTGGAATACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTCCTGAAAGCTGTCCTCTGACCTTCATACTTCGTGGAATACAT  449

seq1  GTGCATACATATTCATATACAAAGTAAAAATGTAAAAGCAACCACCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATACATATTCATATACAAAGTAAAAATGTAAAAGCAACCACCACCA  499

seq1  CAACAACAAAAAAAACACCCTGAACCAACCAACCAACCATGCTAGCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAAAAAAACACCCTGAACCAACCAACCAACCATGCTAGCCTAA  549

seq1  AAGTAAATCATTTACATGTATCTGCACTTCTGAGGCTTCCACTCTATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATCATTTACATGTATCTGCACTTCTGAGGCTTCCACTCTATTTG  599

seq1  AGTGGATCCAGAGAATGCAGTTTTCTTCTGCCAGAAGGGCTTGCTTTAAC  650
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  AGTGGATCCAGATAATGCAGATTTCTTCTGCCAGAAGGGCTTGCTTTAAC  649

seq1  ATCTTTGGTCATATATGTCTTCCACAGGTGAATTGTCTCAGGATGGTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGTCATATATGTCTTCCACAGGTGAATTGTCTCAGGATGGTTGC  699

seq1  TTTCACATCTCTTGTCATGCATGCCTTCTGCAGGTGAATTGTCTCAGGTT  750
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  TTTCACATCTCTTGTCATGCATGCCTTCTGCACGTGAATTGTCTCAGGAT  749

seq1  TGCTGTGTATGTTTTGCTTTGTTTTGGAGACAAACCCTGACCTCCCTTCT  800
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  TGCTGTGTATGTTGTGCTTTGTTTTGGAGACAAACCCTGACCACCCTTCT  799

seq1  CGTAACTTTTCCCCTCATTAATGGGGACTGCTCAACTCTGCTTCTTCCTG  850
      |||| | ||||| ||||||||||||||| |||||||||||||||||||||
seq2  CGTATC-TTTCCTCTCATTAATGGGGACAGCTCAACTCTGCTTCTTCCTG  848

seq1  CGCCTCAGCATGGAAATCTGTTCCCATTTCCCTGTAAGAGGTGCCCACCC  900
      || ||||||||||||||||||||||| |||| ||| ||||||||||||||
seq2  CG-CTCAGCATGGAAATCTGTTCCCA-TTCCATGT-AGAGGTGCCCACCC  895

seq1  TAAGTTTGCAAACCAAACTTAGTGTGAGAGTAACCCCTATCCCTCTTCCT  950
      | || ||||| || | || ||||| |||||| |||||||| |||||| | 
seq2  T-AGGTTGCATACGATACGTAGTGAGAGAGT-ACCCCTAT-CCTCTT-CA  941

seq1  CTGCTTTGGATGGAAACTGCCCAGAGGCTAACAGTTTCCTGAAGGGGGAA  1000
      |||||| ||||||||||||  |||  | | ||||||| ||||| ||||||
seq2  CTGCTTAGGATGGAAACTG-ACAGTAGGTTACAGTTT-CTGAA-GGGGAA  988

seq1  GGTTTCCCTTCAGCTTGTCCCCTGGAGAGAAAAGGAGGCCTGTGG  1045
      ||||| ||||||||||||  || ||| ||||||||| ||||||||
seq2  GGTTT-CCTTCAGCTTGT-ACCAGGAAAGAAAAGGAAGCCTGTGG  1031

seq1: chr9_74994739_74995798
seq2: B6Ng01-066L09.g_67_1122 (reverse)

seq1  GGCTCTGCCACCGAAAGCTGGCTACTGCCACAGAGACATACATCAAGCCC  50
      ||||| |||| |||||||| |||||||||||||| |||| ||||||||||
seq2  GGCTCCGCCA-CGAAAGCT-GCTACTGCCACAGAAACATTCATCAAGCCC  48

seq1  ATCTCCAAGCTGCAGGCCACAAATGCCCGAGATGCTTTAGCAAAGCA-CA  99
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  ATCTCCAAGCTGCAGGCCACAAATGCCCGAGATGC-TTAGCAAAGCACCA  97

seq1  TCTATGCAAAGCTCTTTAACTGGATTGTTGACCACGTCAATCAGGCTCTC  149
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  TCTATGCAAAGCTCTT--ACTGGATTGTTGACCACGTCAATCAGGCTCTC  145

seq1  CATTCTGCTGTCAAGCAGCACTCTTTCATCGGCGTGCTGGACATCTATGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCTGTCAAGCAGCACTCTTTCATCGGCGTGCTGGACATCTATGG  195

seq1  GTGAGTGCATTTGGCTGGCTGCCCTACTCTGCTGGAAAGCAGTTGTTTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGCATTTGGCTGGCTGCCCTACTCTGCTGGAAAGCAGTTGTTTGT  245

seq1  TTGGGGGTATTTTGTACCTCTGAGCACTGTTTAATTTTGTTTTCTACTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTATTTTGTACCTCTGAGCACTGTTTAATTTTGTTTTCTACTGG  295

seq1  AGAAGAGAAGGAAATCCTAACTTATAACCATTCAGAAGTGTCTTTGATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAGGAAATCCTAACTTATAACCATTCAGAAGTGTCTTTGATAA  345

seq1  TGGAGATATAATGATGCAAAAAAAAAAAAAACCCTTACACATTGCTTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATATAATGATGCAAAAAAAAAAAAAACCCTTACACATTGCTTAAA  395

seq1  CAAAAATTAACTCAGCTCCAGAATCTATCTACAAAGCTAATAGATTGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTAACTCAGCTCCAGAATCTATCTACAAAGCTAATAGATTGAAT  445

seq1  TAATTGGTTTTCACACTCTTATATGGCAAATTATTGAATTTCTAAAAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGTTTTCACACTCTTATATGGCAAATTATTGAATTTCTAAAAATA  495

seq1  TGATTTCATTTCTAGTTGCATTCTGTAACATTGATATTTTTTGTACATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCATTTCTAGTTGCATTCTGTAACATTGATATTTTTTGTACATGG  545

seq1  ACTTGTTTGGCAGCTAATTTTTCACTCTCTGGTTCAGATTTTCAGAAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTGGCAGCTAATTTTTCACTCTCTGGTTCAGATTTTCAGAAGAA  595

seq1  CCTGTTAGGTTTCTGTTTCTACCTCCCACTTCTCTGTGAAATGTTTGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGGTTTCTGTTTCTACCTCCCACTTCTCTGTGAAATGTTTGGAG  645

seq1  TATAAATTGACAGGAACTGTTGCTTTAGCATTGATTTGTTGTTTCCTACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTGACAGGAACTGTTGCTTTAGCATTGATTTGTTGTTTCCTACT  695

seq1  GGATATGAAGGGGCCTCAAAAAGCCAAGGCTATACATCCTTAGGCAGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGAAGGGGCCTCAAAAAGCCAAGGCTATACATCCTTAGGCAGGAC  745

seq1  TGTCTCAGCTGATGCTCATCCTGTGCTGACTCTCCAACTTACAGACTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGCTGATGCTCATCCTGTGCTGACTCTCCAACTTACAGACTTTT  795

seq1  ATCAGATATGGAGAAGATAATGTTAAGAGACTTCACATTTTTCTCTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATGGAGAAGATAATGTTAAGAGACTTCACATTTTTCTCTTTCA  845

seq1  AGTGTGCATATTTTAAATATTTTTTTAAAACTGTTCTTTTTCTTTTCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCATATTTTAAATATTTTTTTAAAACTGTTCTTTTTCTTTTCTTC  895

seq1  CTACCTTATATTTTTGGTATTACAGATTTGAAACATTTGAAATAAATAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTATATTTTTGGTATTACAGATTTGAAACATTTGAAATAAATAGT  945

seq1  TTTGAACAGTTCTGCATAAATTATGCAAATGAAAAACTACAACAACAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACAGTTCTGCATAAATTATGCAAATGAAAAACTACAACAACAATT  995

seq1  CAACATGGTAAGAATTTTCTTTCTTGAATAAGATTCTTCTACAAACTTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGTAAGAATTTTCTTTCTTGAATAAGATTCTTCTACAAACTTTC  1045

seq1  CTTTTGAATTC  1060
      |||||||||||
seq2  CTTTTGAATTC  1056