BAC Information

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BAC

Clone NameB6Ng01-066N15
Chromosome9 (Build37)
Map Location 120,401,075 - 120,402,011
singlet/doubletsinglet
Overlap geneEif1b
Upstream geneScn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044
Downstream geneLOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4, Trak1, Cck
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066N15.bB6Ng01-066N15.g
ACCDH885911DH885912
length9351,132
definitionDH885911|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N15, 5' end.DH885912|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaatttttagtctactgctttggtctagaaagccaaccacctg
cataggtggtttacataggttaagacggttctccactgtccactgatggt
tgtgcacggttactctttacagttacttcatctgctcgctcacactcacc
tagcaaccaccagacacccatcctgcacgggacttgcatccgaccttagg
aggctccgcagaggagagctcgggcgggatggtagcgcgttctctccacg
cacacctgactctgctagaggctaggtcgtgacacctgagacaaacaggt
taagcttagtagagactgcagcatcggaatcccggggcttggaggaaggg
agaattcccaggtggcacccacaagggttctgcaaggaactcaggggtct
cgggaaccctgggggctggggagggcggcggaggcgcagagcgcggtccc
cgctggttgcaagtccagacccccgggggcacgtttctcgccgttgcacc
cggaagcgcctccgcccggcgcctcgggcgggacggaccgcggctgcccg
cagtgggctcccgcccgctcctcgctggcccccggctcggcgctccgggg
cggacgcgcggtgcgtgcggacggtcacgtggcggcggcgcgcggggcta
aatacgcggcgccggccattttgtgcgagaagccgcagcgccgcctccct
gctcgcgccccaccgccgcctccgcgtcttcctgcgccccgggcttccgc
cgcttcattgattttccgtttctcgccgctgcagcctcctgacacggtga
tcccggcgggccctcgcgggaattctattcgtctcaccggcctcacacta
gtgtcgctgtccactatccagaacctccaatctttcggtagggccattgg
ccggcgcggccgtgtcctctggggtttgtctcggc
gaattcttcccccacctgatagtcaatcagcttatgtgccaaaaaacggg
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctactaatgcctcaaatgagtattc
agccggtgccagtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccggggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaagggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggaaaaatctgcaggacctgagataaa
gaagatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctctgccttaagattaatggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatttctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccgttgccttgacgtgggaatcctct
gaaggacagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatttgggccttattttgtccaatg
aaaacgccccatcgggagggtattcatctaaagcaaaaatatcatggcaa
agatgggttataaagaagaaaaggttaggacttcagaacaggaaggatag
agcctatcttacttatgaaacaagactgacaggtctgggtttccatagcg
ccattgggcagcacggcccatacttgaatacggggaatcagtgtgggttc
tctcattgccctattccctgaaaactggaagcttgtaattcactggaaag
accattaactcaggcatattgagcatcacctacctggaatcccattttgt
ataagaaaagccaggatgggaacggttcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120401075_120402011
seq2: B6Ng01-066N15.b_49_983

seq1  GAATTCCAAATTTTTAGTCTACTGCTTTGGTCTAGAAAGCCAACCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTTTTAGTCTACTGCTTTGGTCTAGAAAGCCAACCACCTG  50

seq1  CATAGGTGGTTTACATAGGTTAAGACGGTTCTCCACTGTCCACTGATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGGTTTACATAGGTTAAGACGGTTCTCCACTGTCCACTGATGGT  100

seq1  TGTGCACGGTTACTCTTTACAGTTACTTCATCTGCTCGCTCACACTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACGGTTACTCTTTACAGTTACTTCATCTGCTCGCTCACACTCACC  150

seq1  TAGCAACCACCAGACACCCATCCTGCACGGGACTTGCATCCGACCTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACCACCAGACACCCATCCTGCACGGGACTTGCATCCGACCTTAGG  200

seq1  AGGCTCCGCAGAGGAGAGCTCGGGCGGGATGGTAGCGCGTTCTCTCCACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCGCAGAGGAGAGCTCGGGCGGGATGGTAGCGCGTTCTCTCCACG  250

seq1  CACACCTGACTCTGCTAGAGGCTAGGTCGTGACACCTGAGACAAACAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGACTCTGCTAGAGGCTAGGTCGTGACACCTGAGACAAACAGGT  300

seq1  TAAGCTTAGTAGAGACTGCAGCATCGGAATCCCGGGGCTTGGAGGAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTAGTAGAGACTGCAGCATCGGAATCCCGGGGCTTGGAGGAAGGG  350

seq1  AGAATTCCCAGGTGGCACCCACAAGGGTTCTGCAAGGAACTCAGGGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCCAGGTGGCACCCACAAGGGTTCTGCAAGGAACTCAGGGGTCT  400

seq1  CGGGAACCCTGGGGGCTGGGGAGGGCGGCGGAGGCGCAGAGCGCGGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAACCCTGGGGGCTGGGGAGGGCGGCGGAGGCGCAGAGCGCGGTCCC  450

seq1  CGCTGGTTGCAAGTCCAGACCCCCGGGGGCACGTTTCTCGCCGTTGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGTTGCAAGTCCAGACCCCCGGGGGCACGTTTCTCGCCGTTGCACC  500

seq1  CGGAAGCGCCTCCGCCCGGCGCCTCGGGCGGGACGGACCGCGGCTGCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGCGCCTCCGCCCGGCGCCTCGGGCGGGACGGACCGCGGCTGCCCG  550

seq1  CAGTGGGCTCCCGCCCGCTCCTCGCTGGCCCCCGGCTCGGCGCTCCGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCTCCCGCCCGCTCCTCGCTGGCCCCCGGCTCGGCGCTCCGGGG  600

seq1  CGGACGCGCGGTGCGTGCGGACGGTCACGTGGCGGCGGCGCGCGGGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACGCGCGGTGCGTGCGGACGGTCACGTGGCGGCGGCGCGCGGGGCTA  650

seq1  AATACGCGGCGCCGGCCATTTTGTGCGAGAAGCCGCAGCGCCGCCTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGCGGCGCCGGCCATTTTGTGCGAGAAGCCGCAGCGCCGCCTCCCT  700

seq1  GCTCGCGCCCCACCGCCGCCTCCGCGTCTTCCTGCGCCCCGGGCTTCCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCGCCCCACCGCCGCCTCCGCGTCTTCCTGCGCCCCGGGCTTCCGC  750

seq1  CGCTTCATTGA-TTTCCGTTTCTCGCCGCTGCAGCCTCCTGACACGGTGA  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCATTGATTTTCCGTTTCTCGCCGCTGCAGCCTCCTGACACGGTGA  800

seq1  TCCGGGCGGGCCC-CGCGGGAATTCTA-TCCTCTCACCGGCCTCACACTA  847
      ||| ||||||||| ||||||||||||| || |||||||||||||||||||
seq2  TCCCGGCGGGCCCTCGCGGGAATTCTATTCGTCTCACCGGCCTCACACTA  850

seq1  GTGTCGCATGTCCACTATCCAGAACCTCCAATCTTTCGGTAAGGGCCAGT  897
      ||||||| |||||||||||||||||||||||||||||||| ||||||| |
seq2  GTGTCGC-TGTCCACTATCCAGAACCTCCAATCTTTCGGT-AGGGCCATT  898

seq1  GGCCGGCCGCCGCCCGCGTCCCTCTGGGCTTTGTCTCGGC  937
      |||||||   || ||| || |||||||| |||||||||||
seq2  GGCCGGC--GCGGCCGTGT-CCTCTGGGGTTTGTCTCGGC  935