BAC Information

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BAC

Clone NameB6Ng01-067C22
Chromosome9 (Build37)
Map Location 111,952,154 - 112,112,117
singlet/doubletdoublet
Overlap geneArpp21, LOC100039341
Upstream geneCcrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik
Downstream geneLOC620760, LOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067C22.bB6Ng01-067C22.g
ACCDH886150DH886151
length1,096778
definitionDH886150|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C22, 5' end.DH886151|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,952,154 - 111,953,254)(112,111,339 - 112,112,117)
sequence
gaattcctggcaatatgtctcaagttatggcttcatctctccagaatcgc
tgcagttgctgcaataaagcatcatttaccagtctctgataattaaaatt
tgaatattctatatctgtgactatgctatggtttttattttcagttactg
taactttttctttttctgtcaattccatcataactaaggagtcttagtaa
tcttttcatttagcctcagtttattttaagacacaggaaaggtttggtgt
ttctgtttacatattgtagagttattgtgtccaagtagctctctacccag
acacgtgtctctcggtctctccggtaatgacatgtatttatgtgaccggc
attcagcagagagtctgttagagaacatggtgattggtatgaggaaggag
gaaactccctttactgtgtgtgagagggagctgatggaggaggacctcag
gtaagggatggctggttagcagtaagtgtgttacaaagcacctgcaggag
gtatctttcatgggaggattaaagagttgagccatcatagtagctcatga
ggatgggctagcgagaagatatcaccatcattacaccaacagaggctggc
aaatagcaggagcagtagagagctaggtgtatcagtgagtgaccttgagg
atggtggttctctagaatgatggtgcccagtgaaagtccccagctaccag
agttaaaggctgcaggcactactgtgacaagtataaggggaatggccaga
acactgtctggtgggagatttgagaatggttataaggacgtggaggaaac
tgaatagatcaactggttccattagaaatagcagagtggagatgtccttt
acaggttccaattttcacattgcttgggtcaccctaatagattcctgaga
gttccattgtcctagatttctagctcttcccagagatgtcacatcaccta
ctccagttctctctcctagtatctccgatctcctgcattagatccctctt
ggcccccttacacccatatccccactctaatgtctattttatatccctac
tcagggagatcaggcatcccttctttggccctctcttgttattagc
gaattccacaccaggtactattctgtgaaggctgagcacaagggtatctc
aacccagtgctaaagagcgcttcctttacatcatgaccggggagaaaagc
cttgactggagtccagcaagttaccagcgtacctgtctgtgagaggtttg
taagcacctcacactgcccctgggcatactcactcacttccggatcagcg
tctcccacctgacctgcaagtgagcaggccagtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtaagtataatttactcccaaagatgaaattttagatatca
tcatttttattatgaaaaatgtgtcagcacttgcacaaaacaggatcccg
tgttttgagcctccatgtgcatagaagagtgtcagtattttgcctttttc
cattctagacctatcatcaacagcgccaagcatagccactcgcgttgctg
ggtggaccaggagggagggttgtggtttcagcgcatggagagagttgcca
gtggctgaaatcaggcctgttttttagtcgccttaactgactaagagtaa
aggtatcggggccatatttctgagaagtggggagtccactgtgcagcctt
gggcagggcgagctgtccacttttgtttccaaggttcggattctacaaaa
acccaaggacccggatctgacactgacactcaaggctccctcggagtcct
gtggcctcaaatatcatgctctgcgtcctaggctacttcaaaggcacaga
acatccaacgtgcttgttcatttcgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_111952154_111953254
seq2: B6Ng01-067C22.b_46_1141

seq1  GAATTCCTGGCAATATGTCTCAAGTTATGGCTTCATCTCTCCAGAATCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCAATATGTCTCAAGTTATGGCTTCATCTCTCCAGAATCGC  50

seq1  TGCAGTTGCTGCAATAAAGCATCATTTACCAGTCTCTGATAATTAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGCTGCAATAAAGCATCATTTACCAGTCTCTGATAATTAAAATT  100

seq1  TGAATATTCTATATCTGTGACTATGCTATGGTTTTTATTTTCAGTTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTCTATATCTGTGACTATGCTATGGTTTTTATTTTCAGTTACTG  150

seq1  TAACTTTTTCTTTTTCTGTCAATTCCATCATAACTAAGGAGTCTTAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTTCTTTTTCTGTCAATTCCATCATAACTAAGGAGTCTTAGTAA  200

seq1  TCTTTTCATTTAGCCTCAGTTTATTTTAAGACACAGGAAAGGTTTGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATTTAGCCTCAGTTTATTTTAAGACACAGGAAAGGTTTGGTGT  250

seq1  TTCTGTTTACATATTGTAGAGTTATTGTGTCCAAGTAGCTCTCTACCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTACATATTGTAGAGTTATTGTGTCCAAGTAGCTCTCTACCCAG  300

seq1  ACACGTGTCTCTCGGTCTCTCCGGTAATGACATGTATTTATGTGACCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGTCTCTCGGTCTCTCCGGTAATGACATGTATTTATGTGACCGGC  350

seq1  ATTCAGCAGAGAGTCTGTTAGAGAACATGGTGATTGGTATGAGGAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCAGAGAGTCTGTTAGAGAACATGGTGATTGGTATGAGGAAGGAG  400

seq1  GAAACTCCCTTTACTGTGTGTGAGAGGGAGCTGATGGAGGAGGACCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCCTTTACTGTGTGTGAGAGGGAGCTGATGGAGGAGGACCTCAG  450

seq1  GTAAGGGATGGCTGGTTAGCAGTAAGTGTGTTACAAAGCACCTGCAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGATGGCTGGTTAGCAGTAAGTGTGTTACAAAGCACCTGCAGGAG  500

seq1  GTATCTTTCATGGGAGGATTAAAGAGTTGAGCCATCATAGTAGCTCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTCATGGGAGGATTAAAGAGTTGAGCCATCATAGTAGCTCATGA  550

seq1  GGATGGGCTAGCGAGAAGATATCACCATCATTACACCAACAGAGGCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGCTAGCGAGAAGATATCACCATCATTACACCAACAGAGGCTGGC  600

seq1  AAATAGCAGGAGCAGTAGAGAGCTAGGTGTATCAGTGAGTGACCTTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAGGAGCAGTAGAGAGCTAGGTGTATCAGTGAGTGACCTTGAGG  650

seq1  ATGGTGGTTCTCTAGAATGATGGTGCCCAGTGAAAGTCCCCAGCTACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTTCTCTAGAATGATGGTGCCCAGTGAAAGTCCCCAGCTACCAG  700

seq1  AGTTAAAGGCTGCAGGCACTACTGTGACAAGTATAAGGGGAATGGCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGGCTGCAGGCACTACTGTGACAAGTATAAGGGGAATGGCCAGA  750

seq1  ACACTGTCTGGTGGGAGATTTGAGAATGGTTATAAGGACGTGGAGGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCTGGTGGGAGATTTGAGAATGGTTATAAGGACGTGGAGGAAAC  800

seq1  TGAATAGATCAACTGGTTCCATTAGAAATAGCAAGAGTGGAGATGTCCTT  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAATAGATCAACTGGTTCCATTAGAAATAGC-AGAGTGGAGATGTCCTT  849

seq1  TACAGGTTCCAA-TTTCACATTGCTTGGGTCACCCTAATAGATTCCTGAG  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACAGGTTCCAATTTTCACATTGCTTGGGTCACCCTAATAGATTCCTGAG  899

seq1  AGTTTCCATTGTCCTAGATTTCTAGCTCTTCCCAGAGATGTCACATCACC  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TTCCATTGTCCTAGATTTCTAGCTCTTCCCAGAGATGTCACATCACC  948

seq1  TACTCCAGTTCTCTCTCCTAGTATCTCCCGATCTCCTGCATTAGATCCCT  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TACTCCAGTTCTCTCTCCTAGTATCT-CCGATCTCCTGCATTAGATCCCT  997

seq1  CTTGCCCCCCTAACCACCCATATCCCCACTCTAATGTCTATTTTATTTCC  1049
      |||| |||||| | |||||||||||||||||||||||||||||||| | |
seq2  CTTGGCCCCCTTA-CACCCATATCCCCACTCTAATGTCTATTTTATAT-C  1045

seq1  CCTACTCAGTGAGATTCAAGCATCCTTCCTTGGGCCCTC-CTTGTTACTT  1098
      ||||||||| |||| ||| |||||| | ||| ||||||| ||||||| ||
seq2  CCTACTCAGGGAGA-TCAGGCATCCCTTCTTTGGCCCTCTCTTGTTA-TT  1093

seq1  AGC  1101
      |||
seq2  AGC  1096

seq1: chr9_112111339_112112117
seq2: B6Ng01-067C22.g_68_845 (reverse)

seq1  GGACGAAATGAAACAAGCACGTTGGATGTTCTGTGCCTTCG-AGTAGCCT  49
      || ||||||| |||||||||||||||||||||||||||| | ||||||||
seq2  GGGCGAAATG-AACAAGCACGTTGGATGTTCTGTGCCTTTGAAGTAGCCT  49

seq1  AGGACGCAGAGCATGATATTTTGAGGCCACAGGACTCCGAGGGAGCCTTG  99
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGACGCAGAGCATGATA-TTTGAGGCCACAGGACTCCGAGGGAGCCTTG  98

seq1  AGTGTCAGTGTCAGATCCGGGTCCTTGGGTTTCTGTAGAATCCGAACCTT  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTGTCAGTGTCAGATCCGGGTCCTTGGGTTTTTGTAGAATCCGAACCTT  148

seq1  GGAAACAAAAGTGGACAGCTCGCCCTGCCCAAGGCTGCACAGTGGACTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAAAGTGGACAGCTCGCCCTGCCCAAGGCTGCACAGTGGACTCC  198

seq1  CCACTTCTCAGAAATATGGCCCCGATACCTTTACTCTTAGTCAGTTAAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTCAGAAATATGGCCCCGATACCTTTACTCTTAGTCAGTTAAGG  248

seq1  CGACTAAAAAACAGGCCTGATTTCAGCCACTGGCAACTCTCTCCATGCGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTAAAAAACAGGCCTGATTTCAGCCACTGGCAACTCTCTCCATGCGC  298

seq1  TGAAACCACAACCCTCCCTCCTGGTCCACCCAGCAACGCGAGTGGCTATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCACAACCCTCCCTCCTGGTCCACCCAGCAACGCGAGTGGCTATG  348

seq1  CTTGGCGCTGTTGATGATAGGTCTAGAATGGAAAAAGGCAAAATACTGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCGCTGTTGATGATAGGTCTAGAATGGAAAAAGGCAAAATACTGAC  398

seq1  ACTCTTCTATGCACATGGAGGCTCAAAACACGGGATCCTGTTTTGTGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTATGCACATGGAGGCTCAAAACACGGGATCCTGTTTTGTGCAA  448

seq1  GTGCTGACACATTTTTCATAATAAAAATGATGATATCTAAAATTTCATCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACACATTTTTCATAATAAAAATGATGATATCTAAAATTTCATCT  498

seq1  TTGGGAGTAAATTATAGTTACACACACACACACACACACACACACACACT  549
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGGGAGTAAATTATACTTACACACACACACACACACACACACACACACT  548

seq1  GGCCTGCTCACTTGCAGGTCAGGTGGGAGACGCTGATCCGGAAGTGAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTCACTTGCAGGTCAGGTGGGAGACGCTGATCCGGAAGTGAGTG  598

seq1  AGTATGCCCAGGGGCAGTGTGAGGTGCTTACAAACCTCTCACAGACAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCCCAGGGGCAGTGTGAGGTGCTTACAAACCTCTCACAGACAGGT  648

seq1  ACGCTGGTAACTTGCTGGACTCCAGTCAAGGCTTTTCTCCCCGGTCATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGTAACTTGCTGGACTCCAGTCAAGGCTTTTCTCCCCGGTCATGA  698

seq1  TGTAAAGGAAGCGCTCTTTAGCACTGGGTTGAGATACCCTTGTGCTCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGGAAGCGCTCTTTAGCACTGGGTTGAGATACCCTTGTGCTCAGC  748

seq1  CTTCACAGAATAGTACCTGGTGTGGAATTC  779
      ||||||||||||||||||||||||||||||
seq2  CTTCACAGAATAGTACCTGGTGTGGAATTC  778