BAC Information

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BAC

Clone NameB6Ng01-068K11
Chromosome9 (Build37)
Map Location 113,682,784 - 113,825,331
singlet/doubletdoublet
Overlap geneClasp2
Upstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip
Downstream geneUbp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068K11.bB6Ng01-068K11.g
ACCDH887179DH887180
length760569
definitionDH887179|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K11, 5' end.DH887180|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,682,784 - 113,683,542)(113,824,758 - 113,825,331)
sequence
gaattctttgacaggtgagaaatgctgcactatcagctgtagtggagatt
tatagacacgtaggagagaagctgaggattgatttgtgtaaaagagacat
tccccctgctaggtaagtcttaaatatatatatattttttgctacagttg
tatttgtatctactttactaattaacgtcattctattacagccaggcagg
tgtggtggtggtgcacacctttaatcccaggatgtgggaggcagaggcag
gcagatctttgtggtctgggcagctaggcctacatagagagttccagtga
gccaggggtccataacagttttagtttcctgagtttcctggaaccagttt
gtagacatagaactgaccagtgccggcactgtgctcatgtagcttcaggt
ttccttcaactctgctttcaaagtgcttagtattttcagggtagggtgtg
tgaattagagctttttccatagctcgtcttgccacctgcaatgacagctt
tatttttccctgtctgtacatttctcatttccctttcttgtccttattgt
ctaggatttcctatgtgctattgagaaagagtagaatgggttacattctt
gccttgttctgatcttagaacaattctagtttcttcacattaagattgag
gttagttgctaggtggtagtgcacaccttttaaccccagcacttggaagg
cagaggtaggcagatctcttgtcagttttgaagctactgagaccctgtct
caaataaata
taatcatttcttgaaaatataatggccaaaacccattaaactatgggcca
cactgggggcagtgttggtagggacactctgacagtctcttcggtggtgg
atatggtagaaggcttaaaaaacagcaaagttcttggctagagagaggct
catcagggcaaggcagatggctctgagatagtcctcccatacaggagata
agttatacagatctgtcacagacgcagccatggaccatatcagctgcagt
acagttgcagcaggaagccgatacagcggcctcagatgtacaggctcagg
ttcagaatcctaagatttttctttcatggaaagagcccttcctttcttcc
ctccctccctccctgcctccctgcctctctcccttctccctgtgttagac
ataccgcctgtgtgtggcagtgggatcagaaatacatgagaaatgtgctt
ggtgtggaggcgcacacctttaatcccagcacttggaggcaaaggcaggt
acatctcccagtttcagaccagtctgagttacatggtgaaattccaatct
cagaaaacaaataaaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_113682784_113683542
seq2: B6Ng01-068K11.b_44_803

seq1  GAATTCTTTGACAGGTGAGAAATGCTGCACTATCAGCTGTAGTGGAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACAGGTGAGAAATGCTGCACTATCAGCTGTAGTGGAGATT  50

seq1  TATAGACACGTAGGAGAGAAGCTGAGGATTGATTTGTGTAAAAGAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACACGTAGGAGAGAAGCTGAGGATTGATTTGTGTAAAAGAGACAT  100

seq1  TCCCCCTGCTAGGTAAGTCTTAAATATATATATATTTTTTGCTACAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGCTAGGTAAGTCTTAAATATATATATATTTTTTGCTACAGTTG  150

seq1  TATTTGTATCTACTTTACTAATTAACGTCATTCTATTACAGCCAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATCTACTTTACTAATTAACGTCATTCTATTACAGCCAGGCAGG  200

seq1  TGTGGTGGTGGTGCACACCTTTAATCCCAGGATGTGGGAGGCAGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGTGGTGCACACCTTTAATCCCAGGATGTGGGAGGCAGAGGCAG  250

seq1  GCAGATCTTTGTGGTCTGGGCAGCTAGGCCTACATAGAGAGTTCCAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTTTGTGGTCTGGGCAGCTAGGCCTACATAGAGAGTTCCAGTGA  300

seq1  GCCAGGGGTCCATAACAGTTTTAGTTTCCTGAGTTTCCTGGAACCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGGTCCATAACAGTTTTAGTTTCCTGAGTTTCCTGGAACCAGTTT  350

seq1  GTAGACATAGAACTGACCAGTGCCGGCACTGTGCTCATGTAGCTTCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACATAGAACTGACCAGTGCCGGCACTGTGCTCATGTAGCTTCAGGT  400

seq1  TTCCTTCAACTCTGCTTTCAAAGTGCTTAGTATTTTCAGGGTAGGGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCAACTCTGCTTTCAAAGTGCTTAGTATTTTCAGGGTAGGGTGTG  450

seq1  TGAATTAGAGCTTTTTCCATAGCTCGTCTTGCCACCTGCAATGACAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAGAGCTTTTTCCATAGCTCGTCTTGCCACCTGCAATGACAGCTT  500

seq1  TATTTTTCCCTGTCTGTACATTTCTCATTTCCCTTTCTTGTCCTTATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCCTGTCTGTACATTTCTCATTTCCCTTTCTTGTCCTTATTGT  550

seq1  CTAGGATTTCCTATGTGCTATTGAGAAAGAGTAGAATGGGTTACATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTTCCTATGTGCTATTGAGAAAGAGTAGAATGGGTTACATTCTT  600

seq1  GCCTTGTTCTGATCTTAGAACAATTCTAGTTTCTTCACATTAAGATTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTCTGATCTTAGAACAATTCTAGTTTCTTCACATTAAGATTGAG  650

seq1  GTTAGTTGCTAGGTGGTAGTGCACACC-TTTAACCCCAGCACTTGGAAGG  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTAGTTGCTAGGTGGTAGTGCACACCTTTTAACCCCAGCACTTGGAAGG  700

seq1  CAGAGGTAGGCAGATCTCTTGTCAG-TTTGAAGCTACTGAGACCCTGTCT  748
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGAGGTAGGCAGATCTCTTGTCAGTTTTGAAGCTACTGAGACCCTGTCT  750

seq1  CAAAATAAATA  759
      | |||||||||
seq2  C-AAATAAATA  760

seq1: chr9_113824758_113825331
seq2: B6Ng01-068K11.g_70_644 (reverse)

seq1  TTGGTTTATTTGTTTTCTGAGATTGGAATTTCACCATGTAACTCAGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTATTTGTTTTCTGAGATTGGAATTTCACCATGTAACTCAGACTG  50

seq1  GTCTGAAACTGGGAGATGTACCTGCCTTTGCCTCCAAGTGCTGGGATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAACTGGGAGATGTACCTGCCTTTGCCTCCAAGTGCTGGGATTAA  100

seq1  AGGTGTGCGCCTCCACACCAAGCACATTTCTCATGTATTTCTGATCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCGCCTCCACACCAAGCACATTTCTCATGTATTTCTGATCCCAC  150

seq1  TGCCACACACAGGCGGTATGTCTAACACAGGGAGAAGGGAGAGAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACACACAGGCGGTATGTCTAACACAGGGAGAAGGGAGAGAGGCAGG  200

seq1  GAGGCAGGGAGGGAGGGAGGGAAGAAAGGAAGGGCTCTTTCCATGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGGAGGGAGGGAGGGAAGAAAGGAAGGGCTCTTTCCATGAAAGA  250

seq1  AAAATCTTAGGATTCTGAACCTGAGCCTGTACATCTGAGGCCGCTGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTAGGATTCTGAACCTGAGCCTGTACATCTGAGGCCGCTGTATC  300

seq1  GGCTTCCTGCTGCAACTGTACTGCAGCTGATATGGTCCATGGCTGCGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTGCTGCAACTGTACTGCAGCTGATATGGTCCATGGCTGCGTCT  350

seq1  GTGACAGATCTGTATAACTTATCTCCTGTATGGGAGGACTATCTCAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGATCTGTATAACTTATCTCCTGTATGGGAGGACTATCTCAGAGC  400

seq1  CATCTGCCTTGCCCTGATGAGCCTCTCTCTAGCCAAGAACTTTGCTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCTTGCCCTGATGAGCCTCTCTCTAGCCAAGAACTTTGCTGTTT  450

seq1  TTTAAGCCTTCTACCATATCCACCACCGAAGAGACTGTCAGAGTGTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCTTCTACCATATCCACCACCGAAGAGACTGTCAGAGTGTCCCT  500

seq1  ACCAACACTGCCCCCAGTGTGGCCCATAGTTTAATGGGTTTTGGCCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACTGCCCCCAGTGTGGCCCATAGTTTAATGGGTTTTGGCCATTA  550

seq1  TATTTTCAAG-ACTGATTAGAATTC  574
      |||||||||| | ||||||||||||
seq2  TATTTTCAAGAAATGATTAGAATTC  575