BAC Information

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BAC

Clone NameB6Ng01-069I06
Chromosome9 (Build37)X (Build37)
Map Location 110,127,678 - 110,127,73417,212,291 - 17,212,878
singlet/doubletsingletsinglet
Overlap geneSmarcc1
Upstream geneFbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30
Downstream geneRn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069I06.bB6Ng01-069I06.g
ACCDH887798DH887799
length9771,023
definitionDH887798|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I06, 5' end.DH887799|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,127,678 - 110,127,734)(17,212,291 - 17,212,878)
sequence
gaattcctatgggcccaggttaatgattctgtaggttttcttgtggtgtg
tccttcgatccttcctctccctcttctacgggattccccaagctttgcct
aatgtttggctgtgggtttctgcatctgtttccatcagctgctaggtgaa
gtctctcagatgacaggctcctggctgcaaatataacagaatatcattaa
cagtgttggaagtgggctctgtcttgtggtatgggtctcaagttgggcca
agcacttattggccagtaactcaatctctggtccatctttaccctgtaca
tcttgtaggcaggacaaattttgggtcgaaggttttgtggctgggttggt
gtctctatccctccattggaagtcggcctggttacaagaggtgaacatgt
cagtagatttcattttcttacctttaagttatgtgtgtatgtatgtttgt
gtggaagtacgtgcttgtgagtatgtgcctgtggagttcaaaggagggca
ttggatctcttggtggtggaatggtaggcagctgtgatgagctgcctgat
gatggtgttagaaagtaaattcaagtcctctgcaagaggagaatatgctc
ttaactgccgagccacctctctagcttgttttttctaaagcgactgtatg
gtagtcctcacatggctgcacactagtttatttaatcagttccctgttgg
tgaacatgcagatggctccagagcctttgtttgtacaaatagttctcagt
aaataaccttgtgtagatttttttcatatctgctcagatgtaatttacat
ttcattttctagaatgcaattgcttaaggaaaaactgaaatgcattttct
tttctgctgggtagatattgtaaaatccctctatacagtttgctcttcca
ccagcaggaatgagtatctttcacccacagctcactacagagtaccttcc
aaacttgattttttttggggggggggg
gaattcaggaggtgatggtgtggctagtgtcttagcaaaatgttacacac
tgggaacattcaggacagcctaaggctgtagaaaagaactctaaaaacat
gggttcaaaaataatataatttctcaaaaataaggatgcaatatgaatta
tatgtgggactttacaaatctaaaggaacacaaacagctgcactgtgaat
caacttgtcagaaagattccaaggaaggagataaagaggtgtagggagtg
ctgatcacagaagagcccatccagctaagatttttgataatgcttacaaa
ggcagacagattcctgagttcagggtcaacttgggatagagcaaggttag
gcccaggtagaaatagaaatttcagaacagggtcccacacagctagttta
tcatctgtacttaacagaggtaggaagatctctgaattcatttgcaatgt
taaaagaaaatgtgtgcttgctgtcttctaatgattaaaggatgcggatt
cataggataatcgaaagggaacctggaataaatgactggattgatatgta
aaataaaagactgggcttatgatttgcaagaaatgagctatccagagaaa
tttttagagtagtgagagagaactgcttggagaactgtctcaagcaggag
agagagagagagagagagagagagagagagagagagagagagagagagag
agagagagatctgggaaatctccaaagaaagagaacacagagaccatact
ggaaagctgtctagagcagagcacagactgcctgcttggacctacaactt
gacgacctacaactttgactttgagctgttgttttcagtgctccccatca
cccctttttctcagaacggcctctacagccaaggctggtctgtgacactt
tctctgagataagaatgccctctctgctcttatgaatttcataattggct
gagtctgcttcaattttttattatttttgggcaatcattatctctgatgg
ataatgccctggctatttatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110127678_110127734
seq2: B6Ng01-069I06.b_643_1024 (reverse)

seq1  CCCCCCCCCCCAAAAAAAA--AA--TTG--AGG-AC----TAGAGAGATG  39
      |||||||||||||||||||  ||  |||  ||| ||    ||| ||| ||
seq2  CCCCCCCCCCCAAAAAAAATCAAGTTTGGAAGGTACTCTGTAGTGAGCTG  50

seq1  ------------GCTCA-----GCAGTT--AAGAGCA-------------  57
                   ||||     || | |  |||||||             
seq2  TGGGTGAAAGATACTCATTCCTGCTGGTGGAAGAGCAAACTGTATAGAGG  100

seq1  --------------------------------------------------  57
                                                        
seq2  GATTTTACAATATCTACCCAGCAGAAAAGAAAATGCATTTCAGTTTTTCC  150

seq1  --------------------------------------------------  57
                                                        
seq2  TTAAGCAATTGCATTCTAGAAAATGAAATGTAAATTACATCTGAGCAGAT  200

seq1  --------------------------------------------------  57
                                                        
seq2  ATGAAAAAAATCTACACAAGGTTATTTACTGAGAACTATTTGTACAAACA  250

seq1  --------------------------------------------------  57
                                                        
seq2  AAGGCTCTGGAGCCATCTGCATGTTCACCAACAGGGAACTGATTAAATAA  300

seq1  --------------------------------------------------  57
                                                        
seq2  ACTAGTGTGCAGCCATGTGAGGACTACCATACAGTCGCTTTAGAAAAAAC  350

seq1  --------------------------------  57
                                      
seq2  AAGCTAGAGAGGTGGCTCGGCAGTTAAGAGCA  382

seq1: chrX_17212291_17212878
seq2: B6Ng01-069I06.g_510_1090

seq1  TGCAATGTTAAAAGAAAATGTGTGCTTGCTGTCTTCTAATGATTAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTTAAAAGAAAATGTGTGCTTGCTGTCTTCTAATGATTAAAGGA  50

seq1  TGCGGATTCATAGGATAATCGAAAGGGAACCTGGAATAAATGACTGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGATTCATAGGATAATCGAAAGGGAACCTGGAATAAATGACTGGATT  100

seq1  GATATGTAAAATAAAAGACTGGGCTTATGATTTGCAAGAAATGAGCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTAAAATAAAAGACTGGGCTTATGATTTGCAAGAAATGAGCTATC  150

seq1  CAGAGAAATTTTTAGAGTAGTGAGAGAGAACTGCTTGGAGAACTGTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATTTTTAGAGTAGTGAGAGAGAACTGCTTGGAGAACTGTCTCA  200

seq1  AGCAG--GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  248
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250

seq1  AGAGAGAGAGAGAGAGATCT-GGAAATCTCCAAAGAAAGAGAACACAGAG  297
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGATCTGGGAAATCTCCAAAGAAAGAGAACACAGAG  300

seq1  ACCATACTGGAAAGCTGTCTAGAGCAGAGCACAGACTGCCTGCTTGGACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACTGGAAAGCTGTCTAGAGCAGAGCACAGACTGCCTGCTTGGACC  350

seq1  TACAACTTGACGACCTACAAC-TTGACTTTGAGCTGTTTGTTTTCAGTGC  396
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  TACAACTTGACGACCTACAACTTTGACTTTGAGCTG-TTGTTTTCAGTGC  399

seq1  T-CCCATCCACCCCTTTTCTCAGAACGGCCTCTACAAGCCAAGGCTGGTC  445
      | ||||||  ||| ||||||||||||||||||||| ||||||||||||||
seq2  TCCCCATCACCCCTTTTTCTCAGAACGGCCTCTAC-AGCCAAGGCTGGTC  448

seq1  TGTGACACTTTCTCTAGAGATTAAGAATGCCATCTCTGCTCTATATGAAA  495
      ||||||||||||||| |||| |||||||||| |||||||||| |||||| 
seq2  TGTGACACTTTCTCT-GAGA-TAAGAATGCCCTCTCTGCTCT-TATGAA-  494

seq1  TTTCCATAATTGGCTGAGTCTGCTTCTAAATTTTTTATTATATTTGGTCA  545
       || ||||||||||||||||||||||  ||||||||||||| ||||| ||
seq2  -TTTCATAATTGGCTGAGTCTGCTTC--AATTTTTTATTATTTTTGGGCA  541

seq1  ATCTATTTATCTCTGATTGATTAATGCACTGGTCTA-TTATACT  588
      |||   ||||||||||| || |||||| |||| ||| |||||||
seq2  ATC--ATTATCTCTGATGGA-TAATGCCCTGG-CTATTTATACT  581