BAC Information

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BAC

Clone NameB6Ng01-069O02
Chromosome9 (Build37)
Map Location 50,864,493 - 50,865,469
singlet/doubletsinglet
Overlap geneLayn
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2
Downstream gene4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069O02.bB6Ng01-069O02.g
ACCDH888049DH888050
length9781,133
definitionDH888049|Mus musculus domesticus DNA, BAC clone: B6Ng01-069O02, 5' end.DH888050|Mus musculus domesticus DNA, BAC clone: B6Ng01-069O02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccccggaccgaatggggaggagcaaggagagtggatgggtaga
aaatgaaatatattactaagacacaggaaaaacctggcaagaatgcaaaa
ggagaagcaaaggcctccgatttcttacaaggacaatattcagaaagctt
atgaaaatgcccagctcagtcttaggggcaagcacagcatcacaagtccc
tactgggtccccaagttctggctgtacttcttatctgagggcctcatcct
gctgagccttctgagaaggcactttgcccaggggctgctgcacagcagac
tcagtgattgtcagccagtggcttctaactgatatctgagggctggtgct
ttcactgctcagcatgaagggctgaccagggagcttggaaagcccacctc
taggttctgttttccttgctctatacagcagcacaggcaatcacaaaaac
acaaactgtggaatcctctcaaagcctctgtatggatgcctcaggctggc
ctgcacatcaataattaattcccaaacctgcacccccaccccgcccctga
aaaatatccaataaaaagcaggaagtagaatgttagtcagtctgtgtcta
cagcctttcctctgcatgtggcctcaggggaactcttttttttttttttt
tttttttttttcattctcccgacatctaaacttggaaaaatccaacttgg
aaatactttagaaagtaaaaatgagctctgtgtttgcttcagggcttctt
gttctctgggctcagacagtatgtgctgttctggggatgggtggcagcag
cctgggaacatgactgtgtgctggactggtaaagagtagacatactaagg
ataaggagaggcaggcttctcactatcagagaaggcagccacagctacca
gaagggaggaaactgggaatggtcctattgtgtgcaatggaaaatagtga
catgctgtcactgggggagctttatgta
gaattcattgttttgatgtaccacgttttctgtatccattcctctgttga
gggatatctggattctttctaccttctggctatattaatcctgccaatcc
atgaacatgggagatctttccatcttctgaaatcttcttggatttctttc
ttcagagacttgagttcttgtcatacagatctttcacttgcttggttaga
gtcacactaagatatgtaatattatttgtgactattgtgaagggtgtcgt
ttctccaatttctttctcagcctctttatcctttcagtagaggcaggtta
ctgatttggttgagttaattttatatccagccactttgctgaagttgttt
atcagctttaggagttctctggttgaatttttggggtcacttaagtatat
gagttgagtataaacttttgtagtaggatctgatgagtttttggatttcc
acagtttccgttgttatgtctcccttttcatttctgattttattactttg
gatactctctctgtatcctctggtaagtttggctaagggtttatctatct
tgttgattttctcaaagaaccagcttctggttttgttgattctttgtata
gttctttttgtttctatttggttgatttcagccctgagtctggttatttc
ctgccgtctcctcctcttgggtgcatttgcttctttttgttctagagctt
tcagggtgctgttgagtttctttttagaggcacttagagctatgagtttc
ctctcatcactgctttcattgtgtccataagttttggtatgattttcatt
ctaaaaagtctttaatttctttatttcttccttgaccaagttatcattga
atagagcattgttcagcttccatgtatatgtgtgtcttccattgtttttg
ttggaatttaagaccagtcttagtccgttgtgatctgataggataaatgg
gattattcagtcttcttgttttctgttgagcctgtattgtgaccaattat
atggtcattttggaaaaagtacatgagttgctgagaagaacatttatttc
tttgcttttagatgaaccgatctttaatctgttagattcatttgggttca
acactcaaataattgatcacgtggtgattcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50864493_50865469
seq2: B6Ng01-069O02.b_46_1023 (reverse)

seq1  TACATAAAGCT-CCACAGTGACAGCACTGTCACTA-TTTCCATTGCACAC  48
      ||||||||||| || ||||||||||| |||||||| ||||||||||||||
seq2  TACATAAAGCTCCCCCAGTGACAGCA-TGTCACTATTTTCCATTGCACAC  49

seq1  AATAGGACCTATTCCAGTTTCCTCCCTTCTGGTAGCTGTGGCTGCCTTCT  98
      |||||||||  | |||||||||||||||||||||||||||||||||||||
seq2  AATAGGACCATTCCCAGTTTCCTCCCTTCTGGTAGCTGTGGCTGCCTTCT  99

seq1  CTGATAGTGAGAAGCCTGCCTCTCCTTATCCTTAGTATGTCTACTCTTTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGTGAGAAGCCTGCCTCTCCTTATCCTTAGTATGTCTACTCTTTA  149

seq1  CCAGTCCAGCACACAGTCATGTTCCCAGGCTGCTGCCACCCATCCCCAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCAGCACACAGTCATGTTCCCAGGCTGCTGCCACCCATCCCCAGA  199

seq1  ACAGCACATACTGTCTGAGCCCAGAGAACAAGAAGCCCTGAAGCAAACAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACATACTGTCTGAGCCCAGAGAACAAGAAGCCCTGAAGCAAACAC  249

seq1  AGAGCTCATTTTTACTTTCTAAAGTATTTCCAAGTTGGATTTTTCCAAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCATTTTTACTTTCTAAAGTATTTCCAAGTTGGATTTTTCCAAGT  299

seq1  TTAGATGTCGGGAGAATGAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTCGGGAGAATGAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTC  349

seq1  CCCTGAGGCCACATGCAGAGGAAAGGCTGTAGACACAGACTGACTAACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGGCCACATGCAGAGGAAAGGCTGTAGACACAGACTGACTAACAT  399

seq1  TCTACTTCCTGCTTTTTATTGGATATTTTTCAGGGGCGGGGTGGGGGTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCCTGCTTTTTATTGGATATTTTTCAGGGGCGGGGTGGGGGTGC  449

seq1  AGGTTTGGGAATTAATTATTGATGTGCAGGCCAGCCTGAGGCATCCATAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGGAATTAATTATTGATGTGCAGGCCAGCCTGAGGCATCCATAC  499

seq1  AGAGGCTTTGAGAGGATTCCACAGTTTGTGTTTTTGTGATTGCCTGTGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTTGAGAGGATTCCACAGTTTGTGTTTTTGTGATTGCCTGTGCT  549

seq1  GCTGTATAGAGCAAGGAAAACAGAACCTAGAGGTGGGCTTTCCAAGCTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATAGAGCAAGGAAAACAGAACCTAGAGGTGGGCTTTCCAAGCTCC  599

seq1  CTGGTCAGCCCTTCATGCTGAGCAGTGAAAGCACCAGCCCTCAGATATCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGCCCTTCATGCTGAGCAGTGAAAGCACCAGCCCTCAGATATCA  649

seq1  GTTAGAAGCCACTGGCTGACAATCACTGAGTCTGCTGTGCAGCAGCCCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAGCCACTGGCTGACAATCACTGAGTCTGCTGTGCAGCAGCCCCT  699

seq1  GGGCAAAGTGCCTTCTCAGAAGGCTCAGCAGGATGAGGCCCTCAGATAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGTGCCTTCTCAGAAGGCTCAGCAGGATGAGGCCCTCAGATAAG  749

seq1  AAGTACAGCCAGAACTTGGGGACCCAGTAGGGACTTGTGATGCTGTGCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGCCAGAACTTGGGGACCCAGTAGGGACTTGTGATGCTGTGCTT  799

seq1  GCCCCTAAGACTGAGCTGGGCATTTTCATAAGCTTTCTGAATATTGTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAAGACTGAGCTGGGCATTTTCATAAGCTTTCTGAATATTGTCCT  849

seq1  TGTAAGAAATCGGAGGCCTTTGCTTCTCCTTTTGCATTCTTGCCAGGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAATCGGAGGCCTTTGCTTCTCCTTTTGCATTCTTGCCAGGTTT  899

seq1  TTCCTGTGTCTTAGTAATATATTTCATTTTCTACCCATCCACTCTCCTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGTCTTAGTAATATATTTCATTTTCTACCCATCCACTCTCCTTG  949

seq1  CTCCTCCCCATTCGGTCCGGGGAGAATTC  977
      |||||||||||||||||||||||||||||
seq2  CTCCTCCCCATTCGGTCCGGGGAGAATTC  978