BAC Information

Click to search

BAC

Clone NameB6Ng01-069P13
Chromosome9 (Build37)
Map Location 50,940,702 - 51,102,113
singlet/doubletdoublet
Overlap geneLOC100042825, Pou2af1, Gm684, 1810046K07Rik
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4
Downstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069P13.bB6Ng01-069P13.g
ACCDH888116DH888117
length819943
definitionDH888116|Mus musculus domesticus DNA, BAC clone: B6Ng01-069P13, 5' end.DH888117|Mus musculus domesticus DNA, BAC clone: B6Ng01-069P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,940,702 - 50,941,521)(51,101,166 - 51,102,113)
sequence
gaattctagttagtatttactaagtgaggccccgctcctactggaggaga
tatttgctgttgacagatgctgaaggaggaccactcttccttgggggggg
tgtagcccctggtaagctgctcatgttccagttgatagtcacacacatgc
attagagatttccttatttactttgtttttgtggcaagcagatcctatta
tgttgtatgtacatgccaaactgtaagcttatgtatcccatccatgaata
ggatttgtttacttttacaattgtattaacattttttaaaaatcataagg
gtagtcttcaactcaggcattagagataattttaaataaaataaattaag
tccgggactggcgccagttatttctggaggtaaccagttgccgatcctga
ttttgatttataggtcactacattaggaaacagacattgatgtccttctc
tctgctaccatttttatagatattataaaatcgtaattttggtgacttag
aatcaactaaccttgcacataagggctcacatagcctggaccaccaacca
gataacatgcataggtcagacctagtccccctacacagatgtaacatgta
cagcttggtcctcatgtgggacctctaacagcaggagcaggagctgtctc
tgactctgttgtctgcctttggatcccatttccctaacaggatggccttg
tccagcctcaatagaagaagatacatccagttctactataatataatatg
ccaatttgggttgatatccatagaaggtttctcttcactgaggagaaggg
aggaggtatgggggaaggg
gaattctcctcctctttttgaggagaaatggatacacttgggaaagcaga
gggcttttcttcatgattatttttttttattttgaaaatagaactataaa
tgcaccgccctggaagtatcattacctattctccaccctcatcaatctgt
gggctagaacttcatggcatgaatttttgtatttgcccagattcctctct
cagtgtgtttataattaaaactgtcactacagaatccatcattgagtgaa
gtcagagacgaaacttgaagcagaaagtgtagacgaattcttcttgctga
ctcactcacagccttacaggccgattggaaattggtggatttaacatgga
agtgtagcgagccaaagcatgctaaagttggggaacttgagtgtctcccc
aaatgaatacatttgcgtgccatgttgaatgcagcgttccactcccggat
ttacagaccagatggtgtatgagacctgatctaccaccacagagctctta
gaacccctgaggagatcgtggtagcaggtcacagcgtaaagagagcaaaa
taaaaatactacagtaggtggaagaggctcaggttctcgctcccaccacc
cggatcttggtttctcttcaggggggaggggtgagaggtaacaacaaagc
tcaatgggactcactgttgttgcggggagggaagaggggacatcttctcc
acatctcagccccttgagaaagacatctaaggcgtataaaggtctgagga
tatgaaagcttaagtgagttgtgagggtctgggaaggcaatttaagatat
gcaaatacaagttataaaggtctaagatgggatatattaaaatgataaat
tacacggccctggatctgtgcctcaaacggattctcaacaatcactcatt
tctgcagcagacgactgcagggtcagagaggtcaacgcacaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50940702_50941521
seq2: B6Ng01-069P13.b_51_869

seq1  GAATTCTAGTTAGTATTTACTAAGTGAGGCCCCGCTCCTACTGGAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTAGTATTTACTAAGTGAGGCCCCGCTCCTACTGGAGGAGA  50

seq1  TATTTGCTGTTGACAGATGCTGAAGGAGGACCACTCTTCCTTGGGGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTGTTGACAGATGCTGAAGGAGGACCACTCTTCCTTGGGGGGGG  100

seq1  TGTAGCCCCTGGTAAGCTGCTCATGTTCCAGTTGATAGTCACACACATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCCTGGTAAGCTGCTCATGTTCCAGTTGATAGTCACACACATGC  150

seq1  ATTAGAGATTTCCTTATTTACTTTGTTTTTGTGGCAAGCAGATCCTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGATTTCCTTATTTACTTTGTTTTTGTGGCAAGCAGATCCTATTA  200

seq1  TGTTGTATGTACATGCCAAACTGTAAGCTTATGTATCCCATCCATGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATGTACATGCCAAACTGTAAGCTTATGTATCCCATCCATGAATA  250

seq1  GGATTTGTTTACTTTTACAATTGTATTAACATTTTTTAAAAATCATAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTTTACTTTTACAATTGTATTAACATTTTTTAAAAATCATAAGG  300

seq1  GTAGTCTTCAACTCAGGCATTAGAGATAATTTTAAATAAAATAAATTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTCAACTCAGGCATTAGAGATAATTTTAAATAAAATAAATTAAG  350

seq1  TCCGGGACTGGCGCCAGTTATTTCTGGAGGTAACCAGTTGCCGATCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGACTGGCGCCAGTTATTTCTGGAGGTAACCAGTTGCCGATCCTGA  400

seq1  TTTTGATTTATAGGTCACTACATTAGGAAACAGACATTGATGTCCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTATAGGTCACTACATTAGGAAACAGACATTGATGTCCTTCTC  450

seq1  TCTGCTACCATTTTTATAGATATTATAAAATCGTAATTTTGGTGACTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTACCATTTTTATAGATATTATAAAATCGTAATTTTGGTGACTTAG  500

seq1  AATCAACTAACCTTGCACATAAGGGCTCACATAGCCTGGACCACCAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACTAACCTTGCACATAAGGGCTCACATAGCCTGGACCACCAACCA  550

seq1  GATAACATGCATAGGTCAGACCTAGTCCCCCTACACAGATGTAACATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACATGCATAGGTCAGACCTAGTCCCCCTACACAGATGTAACATGTA  600

seq1  CAGCTTGGTCCTCATGTGGGACCTCTAACAGCAGGAGCAGGAGCTGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGTCCTCATGTGGGACCTCTAACAGCAGGAGCAGGAGCTGTCTC  650

seq1  TGACTCTGTTGTCTGCCTTTGGATCCCATTTCCCTAACAGGATGGCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGTTGTCTGCCTTTGGATCCCATTTCCCTAACAGGATGGCCTTG  700

seq1  TCCAGCCTCAATAGAAGAAGATACATCCAGTTCTACTATAATATAATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTCAATAGAAGAAGATACATCCAGTTCTACTATAATATAATATG  750

seq1  CCAATTTGGGTTGATATCCATAGAAGGTTTCTCTTCACTGAGGAGAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCAATTTGGGTTGATATCCATAGAAGGTTTCTCTTCACTGAGGAG-AAGG  799

seq1  GAGGAGGTATGGGGGAGGGG  820
      |||||||||||||||| |||
seq2  GAGGAGGTATGGGGGAAGGG  819

seq1: chr9_51101166_51102113
seq2: B6Ng01-069P13.g_69_1011 (reverse)

seq1  GTTGCTGCGTTTGACACTCTCTGACCCTGCAGTCGTCTGCTGCAGGAAAT  50
      |||| |||| ||||| |||||||||||||||||||||||||||| |||||
seq2  GTTG-TGCG-TTGAC-CTCTCTGACCCTGCAGTCGTCTGCTGCA-GAAAT  46

seq1  GGGTGGTTTGTTGGGAATCCGTTTGGGGCACAGGATCCAGGGCCGTGTAA  100
      | || | |||||| ||||||||||| |||||| |||||||||||||||||
seq2  GAGT-GATTGTTGAGAATCCGTTTGAGGCACA-GATCCAGGGCCGTGTAA  94

seq1  TTTATCATTTTAATATATCCCATCTTAGACCTTTATAACTTGTATTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTTTAATATATCCCATCTTAGACCTTTATAACTTGTATTTGCA  144

seq1  TATCTTAAATTGCCTTCCCAGACCCTCACAACTCACTTAAGCTTTCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAATTGCCTTCCCAGACCCTCACAACTCACTTAAGCTTTCATAT  194

seq1  CCTCAGACCTTTATACGCCTTAGATGTCTTTCTCAAGGGGCTGAGATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACCTTTATACGCCTTAGATGTCTTTCTCAAGGGGCTGAGATGTG  244

seq1  GAGAAGATGT-CCCTCTTCCCTCCCCGCAACAACAGTGAGTCCCATTGAG  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATGTCCCCTCTTCCCTCCCCGCAACAACAGTGAGTCCCATTGAG  294

seq1  CTTTGTTGTTACCTCTCACCCCTCCCCCCTGAAGAGAAACCAAGATCCGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGTTACCTCTCACCCCTCCCCCCTGAAGAGAAACCAAGATCCGG  344

seq1  GTGGTGGGAGCGAGAACCTGAGCCTCTTCCACCTACTGTAGTATTTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGAGCGAGAACCTGAGCCTCTTCCACCTACTGTAGTATTTTTAT  394

seq1  TTTGCTCTCTTTACGCTGTGACCTGCTACCACGATCTCCTCAGGGGTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTCTTTACGCTGTGACCTGCTACCACGATCTCCTCAGGGGTTCT  444

seq1  AAGAGCTCTGTGGTGGTAGATCAGGTCTCATACACCATCTGGTCTGTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCTGTGGTGGTAGATCAGGTCTCATACACCATCTGGTCTGTAAA  494

seq1  TCCGGGAGTGGAACGCTGCATTCAACATGGCACGCAAATGTATTCATTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGAGTGGAACGCTGCATTCAACATGGCACGCAAATGTATTCATTTG  544

seq1  GGGAGACACTCAAGTTCCCCAACTTTAGCATGCTTTGGCTCGCTACACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACACTCAAGTTCCCCAACTTTAGCATGCTTTGGCTCGCTACACTT  594

seq1  CCATGTTAAATCCACCAATTTCCAATCGGCCTGTAAGGCTGTGAGTGAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTAAATCCACCAATTTCCAATCGGCCTGTAAGGCTGTGAGTGAGT  644

seq1  CAGCAAGAAGAATTCGTCTACACTTTCTGCTTCAAGTTTCGTCTCTGACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGAAGAATTCGTCTACACTTTCTGCTTCAAGTTTCGTCTCTGACT  694

seq1  TCACTCAATGATGGATTCTGTAGTGACAGTTTTAATTATAAACACACTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAATGATGGATTCTGTAGTGACAGTTTTAATTATAAACACACTGA  744

seq1  GAGAGGAATCTGGGCAAATACAAAAATTCATGCCATGAAGTTCTAGCCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAATCTGGGCAAATACAAAAATTCATGCCATGAAGTTCTAGCCCA  794

seq1  CAGATTGATGAGGGTGGAGAATAGGTAATGATACTTCCAGGGCGGTGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGATGAGGGTGGAGAATAGGTAATGATACTTCCAGGGCGGTGCAT  844

seq1  TTATAGTTCTATTTTCAAAATAAAAAAAAATAATCATGAAGAAAAGCCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTCTATTTTCAAAATAAAAAAAAATAATCATGAAGAAAAGCCCT  894

seq1  CTGCTTTCCCAAGTGTATCCATTTCTCCTCAAAAAGAGGAGGAGAATTC  948
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCCCAAGTGTATCCATTTCTCCTCAAAAAGAGGAGGAGAATTC  943