BAC Information

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BAC

Clone NameB6Ng01-070A04
Chromosome9 (Build37)
Map Location 78,681,187 - 78,712,028
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070A04.bB6Ng01-070A04.g
ACCDH888144DH888145
length1,1511,130
definitionDH888144|Mus musculus domesticus DNA, BAC clone: B6Ng01-070A04, 5' end.DH888145|Mus musculus domesticus DNA, BAC clone: B6Ng01-070A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,710,850 - 78,712,028)(78,681,187 - 78,682,341)
sequence
gaattctcaacagagaaatctctaatggcccaaaagcacatgaagaggta
ttcagcatctttagtcatcagaaaaatacaaatcaaaacaactctgcaga
tcttgatatcataaaagcagtatgtaccctaattttccattgtgaagtgt
tctaggatagccagggctacacagagaaaccctgtctcgaaaaacaaaca
aacaaaaaaatctaactaaaatactacctagtgatgtcacaatatgaaga
ccataatttggactttttatgtgtgtagacacacattaaaatagacaaca
aagactagtagttaattgtaaggacaagaagttaaagagactcactcatt
aactaacatgtgctgcagaaaaaattgcttaaattcttcatactcagctt
tctcattttctaaatagcagaacaaagctacacaccttaatagcatgatt
caggaacacaatacacatacttaatacacatgagaaaccatggataacca
tgtacatgagagggaagacctttcatgagtatattctcaacacccaggag
tcaagcaacggatcatgcattggtcatagcccaagacataagagcctttc
tctaaaaccaaatcaaaacaaacaacaaaatgtacgataaatttccttag
gaaactatttactaataaggaagttgaaaactagaatatttatatacata
agcatatataaacatatgtgtttggttttttctctgtgtagccttggcag
tcccagaacttgctctgtagatcattctggtctcgaacttataaagatcc
acctgcgtctgccttccaagtactaggattaaaggtgtgggccaccactg
ctggggcttagggttcatattattaaatcaattttattgttaaaggaaat
tgtagaataagttgccaaggttagggaaaaactaacctagcatataaatg
tttcagctggatagagactatgcatatgtccagaagccagggtacagcaa
taccatgagaaatgatctgagacagactgtgactcgtgacagctagcagc
tagccacatgtagactcagagtctgctcagcacagggaaaagtttatgat
tccactccagaaggagaaacttatcaatatagaattaatgcattctgtca
a
gaattcaaacacacatagttgttttattactaattctgtaactctggaaa
ctagtttatttattaaactaaacaattagcttcatattataaaaacaatt
ggttttgtttaatgtctgcatttagggacgattttattagtgacaatgat
tggaagtactaagtaattatgaataaagttatgaacactggcacaactct
tgcaaattgtaaactaacaagttcccaactcaatcctatttttgacacat
gaaataggatctagccagtattgttgaatatgatgtatgtcaaataatat
gctcaacattttacatataaatgaaatcttgaaatatattgcattatatt
ttttcattctatgtctgtggcaggaagggggagtgtatgcttatggaaat
cagaggaccatttgtgggagttggttctctccttccaccatctgggtcct
gtggaggaaactcagattgccagacttggtggcaagtacctttaccactg
agccagctcactggtttaaaacacaaattaaaaaaaaaatctttctgagg
tgggcaggtcacaaaatagaaatcaaacattcagtagggctaactaggca
tatatacaaaagaaatttttgaacctgggatttggtccagatagttcata
tccaaaatagaaagtttctagaaagaagttcacatctgtttattgttcct
aaaatagaaatgtgctattgattttcttagatgttaaatgaatgtgaata
taacaagacactccctatatctatcataatttagagattcaagatactta
tgaacttggttatatcattgttcttaaattagacaacttcttttttaatg
acacaaagttggagttcactaagaaagattttttttttaaaatacagatt
aagtatggatactagaagaagaggagagaagacctgggtccctccagata
gtggctagataatttaaaattttgagtgtatatataatacttgtttgtac
atatcatatgtatatctatgaaaaatatccttcatatctgccacaaaact
ctcatgaaacatcattatctataaaggaggatactcatagcagagaagtt
cacgatcctaaaatagcatactcctgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_78710850_78712028
seq2: B6Ng01-070A04.b_44_1194 (reverse)

seq1  TTGACAGAATTTGCAATTAAATCTATATATGATTATGTTTCTCCTCTTGG  50
      |||||||||  ||| ||||| ||||||| ||| || |||||||||  |||
seq2  TTGACAGAA--TGC-ATTAATTCTATAT-TGA-TAAGTTTCTCCTTCTGG  45

seq1  AGTGGGATTCATAAACTTTTCCCCCTGGTGCTGAGGGCCAGACTCTGAGT  100
      ||| ||| |||||||||||||||    ||||||||   ||||||||||||
seq2  AGT-GGAATCATAAACTTTTCCC---TGTGCTGAG---CAGACTCTGAGT  88

seq1  CTTACATGTGCTAGGCTTGC--CTAGGCTGTCACCGAGTCACAGTTCCTG  148
      | |||||||    |||| ||  ||| ||||||| |||||||||||  |||
seq2  C-TACATGT----GGCTAGCTGCTA-GCTGTCA-CGAGTCACAGT--CTG  129

seq1  TCCTTCAGATCATTTCCTCATGGGTATTGCTGTACCCTGGCTTCTGGACA  198
      ||  ||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  TC--TCAGATCATTT-CTCAT-GGTATTGCTGTACCCTGGCTTCTGGACA  175

seq1  TATGCATAGTTCTTCTATCCAGCCTGAAACATTTATATTGCTAGGTTAGT  248
      ||||||||||   ||||||||| |||||||||||||| ||||||||||| 
seq2  TATGCATAGT--CTCTATCCAG-CTGAAACATTTATA-TGCTAGGTTAG-  220

seq1  TTTTTCCCTAACCTTGGCAACTTATTCTACAATTTCCTTTAACAATAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTAACCTTGGCAACTTATTCTACAATTTCCTTTAACAATAAAA  270

seq1  TTGATTTAATAATATGAACCCTAAGCCCCAGCAGTGGTGGCCCACACCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTAATAATATGAACCCTAAGCCCCAGCAGTGGTGGCCCACACCTT  320

seq1  TAATCCTAGTACTTGGAAGGCAGACGCAGGTGGATCTTTATAAGTTCGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTAGTACTTGGAAGGCAGACGCAGGTGGATCTTTATAAGTTCGAG  370

seq1  ACCAGAATGATCTACAGAGCAAGTTCTGGGACTGCCAAGGCTACACAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATGATCTACAGAGCAAGTTCTGGGACTGCCAAGGCTACACAGAG  420

seq1  AAAAAACCAAACACATATGTTTATATATGCTTATGTATATAAATATTCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCAAACACATATGTTTATATATGCTTATGTATATAAATATTCTA  470

seq1  GTTTTCAACTTCCTTATTAGTAAATAGTTTCCTAAGGAAATTTATCGTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAACTTCCTTATTAGTAAATAGTTTCCTAAGGAAATTTATCGTAC  520

seq1  ATTTTGTTGTTTGTTTTGATTTGGTTTTAGAGAAAGGCTCTTATGTCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGTTTGTTTTGATTTGGTTTTAGAGAAAGGCTCTTATGTCTTG  570

seq1  GGCTATGACCAATGCATGATCCGTTGCTTGACTCCTGGGTGTTGAGAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGACCAATGCATGATCCGTTGCTTGACTCCTGGGTGTTGAGAATA  620

seq1  TACTCATGAAAGGTCTTCCCTCTCATGTACATGGTTATCCATGGTTTCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGAAAGGTCTTCCCTCTCATGTACATGGTTATCCATGGTTTCTC  670

seq1  ATGTGTATTAAGTATGTGTATTGTGTTCCTGAATCATGCTATTAAGGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATTAAGTATGTGTATTGTGTTCCTGAATCATGCTATTAAGGTGT  720

seq1  GTAGCTTTGTTCTGCTATTTAGAAAATGAGAAAGCTGAGTATGAAGAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTGTTCTGCTATTTAGAAAATGAGAAAGCTGAGTATGAAGAATT  770

seq1  TAAGCAATTTTTTCTGCAGCACATGTTAGTTAATGAGTGAGTCTCTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATTTTTTCTGCAGCACATGTTAGTTAATGAGTGAGTCTCTTTAA  820

seq1  CTTCTTGTCCTTACAATTAACTACTAGTCTTTGTTGTCTATTTTAATGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTCCTTACAATTAACTACTAGTCTTTGTTGTCTATTTTAATGTG  870

seq1  TGTCTACACACATAAAAAGTCCAAATTATGGTCTTCATATTGTGACATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACACACATAAAAAGTCCAAATTATGGTCTTCATATTGTGACATCA  920

seq1  CTAGGTAGTATTTTAGTTAGATTTTTTTGTTTGTTTGTTTTTCGAGACAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAGTATTTTAGTTAGATTTTTTTGTTTGTTTGTTTTTCGAGACAG  970

seq1  GGTTTCTCTGTGTAGCCCTGGCTATCCTAGAACACTTCACAATGGAAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCCTGGCTATCCTAGAACACTTCACAATGGAAAAT  1020

seq1  TAGGGTACATACTGCTTTTATGATATCAAGATCTGCAGAGTTGTTTTGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTACATACTGCTTTTATGATATCAAGATCTGCAGAGTTGTTTTGAT  1070

seq1  TTGTATTTTTCTGATGACTAAAGATGCTGAATACCTCTTCATGTGCTTTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTTCTGATGACTAAAGATGCTGAATACCTCTTCATGTGCTTTT  1120

seq1  GGGCCATTAGAGATTTCTCTGTTGAGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  GGGCCATTAGAGATTTCTCTGTTGAGAATTC  1151

seq1: chr9_78681187_78682341
seq2: B6Ng01-070A04.g_67_1196

seq1  GAATTCAAACACACATAGTTGTTTTATTACTAATTCTGTAACTCTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACACACATAGTTGTTTTATTACTAATTCTGTAACTCTGGAAA  50

seq1  CTAGTTTATTTATTAAACTAAACAATTAGCTTCATATTATAAAAACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTATTTATTAAACTAAACAATTAGCTTCATATTATAAAAACAATT  100

seq1  GGTTTTGTTTAATGTCTGCATTTAGGGACGATTTTATTAGTGACAATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTTAATGTCTGCATTTAGGGACGATTTTATTAGTGACAATGAT  150

seq1  TGGAAGTACTAAGTAATTATGAATAAAGTTATGAACACTGGCACAACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTACTAAGTAATTATGAATAAAGTTATGAACACTGGCACAACTCT  200

seq1  TGCAAATTGTAAACTAACAAGTTCCCAACTCAATCCTATTTTTGACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTGTAAACTAACAAGTTCCCAACTCAATCCTATTTTTGACACAT  250

seq1  GAAATAGGATCTAGCCAGTATTGTTGAATATGATGTATGTCAAATAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGGATCTAGCCAGTATTGTTGAATATGATGTATGTCAAATAATAT  300

seq1  GCTCAACATTTTACATATAAATGAAATCTTGAAATATATTGCATTATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACATTTTACATATAAATGAAATCTTGAAATATATTGCATTATATT  350

seq1  TTTTCATTCTATGTCTGTGGCAGGAAGGGGGAGTGTATGCTTATGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCTATGTCTGTGGCAGGAAGGGGGAGTGTATGCTTATGGAAAT  400

seq1  CAGAGGACCATTTGTGGGAGTTGGTTCTCTCCTTCCACCATCTGGGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACCATTTGTGGGAGTTGGTTCTCTCCTTCCACCATCTGGGTCCT  450

seq1  GTGGAGGAAACTCAGATTGCCAGACTTGGTGGCAAGTACCTTTACCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAAACTCAGATTGCCAGACTTGGTGGCAAGTACCTTTACCACTG  500

seq1  AGCCAGCTCACTGGTTTAAAACACAAATTAAAAAAAAAATCTTTCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTCACTGGTTTAAAACACAAATTAAAAAAAAAATCTTTCTGAGG  550

seq1  TGGGCAGGTCACAAAATAGAAATCAAACATTCAGTAGGGCTAACTAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGTCACAAAATAGAAATCAAACATTCAGTAGGGCTAACTAGGCA  600

seq1  TATATACAAAAGAAATTTTTGAACCTGGGATTTGGTCCAGATAGTTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAAAAGAAATTTTTGAACCTGGGATTTGGTCCAGATAGTTCATA  650

seq1  TCCAAAATAGAAAGTTTCTAGAAAGAAGTTCACATCTGTTTATTGTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATAGAAAGTTTCTAGAAAGAAGTTCACATCTGTTTATTGTTCCT  700

seq1  AAAATAGAAATGTGCTATTGATTTTCTTAGATGTTAAATGAATGTGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAATGTGCTATTGATTTTCTTAGATGTTAAATGAATGTGAATA  750

seq1  TAACAAGACACTCCCTATATCTATCATAATTTAGAGATTCAAGATACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGACACTCCCTATATCTATCATAATTTAGAGATTCAAGATACTTA  800

seq1  TGAACTTGGTTATATCATTGTTCTTAAATTAGACAACTTCTTTTTTAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGGTTATATCATTGTTCTTAAATTAGACAACTTCTTTTTTAATG  850

seq1  ACACAAAGTTGGAGTTCACTAAGAAAGATTTTTTTTTTAAAATACAGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGTTGGAGTTCACTAAGAAAGATTTTTTTTTTAAAATACAGATT  900

seq1  AAGTATGGATACTAGAAGAAGAGGAGAGAAGACCTGGGTCCCTCCAGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGATACTAGAAGAAGAGGAGAGAAGACCTGGGTCCCTCCAGATA  950

seq1  GTGGCTAGATAATTTAAAAATTTTGAGTGTTATATATTAATTACTTTGTT  1000
      ||||||||||||||| ||||||||||||| |||||||  | |||||   |
seq2  GTGGCTAGATAATTT-AAAATTTTGAGTG-TATATAT--AATACTT--GT  994

seq1  TTGTACATATCATATGTATATTCTTATTGAAAAAATATCCTTTCATATCT  1050
      |||||||||||||||||||||   |||   |||||||||| |||||||| 
seq2  TTGTACATATCATATGTATAT--CTAT--GAAAAATATCC-TTCATATC-  1038

seq1  TGCCACAAAACCTCTTCATTGAAAACATCAATTATCTATAAAAGAGGGAT  1100
      |||||||||| ||| ||||   ||||||| |||||||||||| || ||||
seq2  TGCCACAAAA-CTC-TCAT--GAAACATC-ATTATCTATAAAGGA-GGAT  1082

seq1  ACTCATAGCAGAGGAAAGTACAACAGAATCACTAAAAATAGCATTACT-C  1149
      |||||||||||||  ||||    ||  ||| || ||||||||| |||| |
seq2  ACTCATAGCAGAG--AAGT---TCACGATC-CT-AAAATAGCA-TACTCC  1124

seq1  TGCTGG  1155
      ||||||
seq2  TGCTGG  1130