BAC Information

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BAC

Clone NameB6Ng01-070F15
Chromosome9 (Build37)
Map Location 41,581,873 - 41,760,202
singlet/doubletdoublet
Overlap gene6720432D03Rik
Upstream gene9030425E11Rik, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566
Downstream geneSorl1, Sc5d, Tecta, Tbcel, Grik4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070F15.bB6Ng01-070F15.g
ACCDH888383DH888384
length1,2631,123
definitionDH888383|Mus musculus domesticus DNA, BAC clone: B6Ng01-070F15, 5' end.DH888384|Mus musculus domesticus DNA, BAC clone: B6Ng01-070F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,581,873 - 41,583,111)(41,759,077 - 41,760,202)
sequence
gaattctcgcgtacaccagattttgttgcgcaaaccttgtgccccaagtt
atccctgattgggtaataaagctgcctacagcctgggttgggcagaagag
agagggtagagcaaaggttcctgcctgggggagtcttaggaagaagaaac
tagctgtggggtaggtagatagtgagcacatggcgatgagggctggcctg
atggagtaggagtggcccaggcagaacatggcaagtgatacctcaggggt
cactacaggaaagtagtcaaaatagcatagagggttgatacctacccaga
tctcgtgcttctaagctgaaggtttctatgtcttttatctggaaacaata
tagtctgaagtgtaatagatatttaaagacaacatggggtgtggcaaccc
ccagagtaataagtaccacaatacttgactatctaagtaccattctttcc
ctcagattctgcattcgaacatcaccatggcttcagtcatcttactcaac
tctttgaagaacagtagtattcttgttttccctggcttcatgcttttcct
ctgtcttacttttctatccctgtctcaagcgtcagccttgtcttttgttt
ttcagacatgtcataattttttctgaaaggcaaatatagctcaatatcat
tggaccgatgactcgcaagtttccacatctatctttaccccaaaatagta
tccagtgagagatgtccaggtagaatgaaactatgatctttaaaatacca
tgccataacttcctatttataaccttcctgtctttccagatatctttgtg
agcacataaatttcatccctttgacttgtgattcataaatcaattcattt
attcattaccttgtccaataagcatttgccaagtgtgtattctgcatgga
gttctaggcaaggcagaggcagtacaagagcaaatgacctaccttgagtc
tgacactgaaggttttccatccatcattatccccctcacacaaactcttc
tccaacatttctaagagctgaagtctaatttccatcattcacattaacaa
ggtttttttcttaccttctggtgttctttgggccttgttcttcctgccct
gggaattaacttccctcccattttttctgcccacttagaagtgcatatat
tttctttacaaatcattgtgttatttccaaatgggtatacattgaattcc
aattcagttctgctcactcttgtagagcctgtgtgtaattcaggtggtgc
ccttcttttgctg
gaattcctcactgagaccaaaggtggattctacatccctccctagtctgt
actcttctccctgcctctgaggtcctagctgtcattgtgtgtaacgctga
cacgcacacgttttcctctgacgtatttgtacacatatatacttcttgca
aacacttgtgcggagtgttaggcacttggcaggcaagcaatgaataactt
ggggaagactgaacaaaacgctaaggttgtatgtcatggctgtcagtgag
gtccctgttcagagctgggatccaccactggctttttgagggtggacgag
ttacacagaaagggatggacaagctctgcctgacgacagtagtatctctg
aactctggagcattctcagacctactgcacaaccatagcaggaaagagag
ctggttggtgggagtgcagggcgggagctgggaagtggtttctttgttct
gggagatttcagccggcacgaaccgcaaattttactgtctgcacaccaag
agcccctcccctcccccttaccgccttcctttccaacctgagaattcatt
cgctgccaccctcggtctcttcctctgccccagagcagtcaccagggaaa
gatctctttgttgagaacaccccgagacaactcagagttgcagagttccc
agggcactgccagggttgccctccgaggagagtggtctcccgggcacaga
cccccacctgttgatctctcctttccccgggggtgagcggcaacttgcat
tgtgccgggatctcacgcgtttccccggcaggctcggcagatggcgctca
tgagcaaagccaccacggtcccttccctgcccctccccaccgtcggggcc
tcgctgggctaaagcaaaaacagatgttttcatcatttttggatctggca
cgtgacttgcagttcagcaatgtgccgacagaacccagagttgtgtgttt
ccttcatctcccgcaaaataaaacaatcttccttaaatgagcgtcctcta
gtgagcctggcgaaccccgatcctctttagccacaggggtgttgcttaat
ggaacctccacctgccgagtgccctgctagccagccttggtctataaatt
gggaagagtctttccagagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_41581873_41583111
seq2: B6Ng01-070F15.b_44_1306

seq1  GAATTCTCGCGTACACCAGATTTTGTTGCGCAAACCTTGTGCCCCAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGCGTACACCAGATTTTGTTGCGCAAACCTTGTGCCCCAAGTT  50

seq1  ATCCCTGATTGGGTAATAAAGCTGCCTACAGCCTGGGTTGGGCAGAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGATTGGGTAATAAAGCTGCCTACAGCCTGGGTTGGGCAGAAGAG  100

seq1  AGAGGGTAGAGCAAAGGTTCCTGCCTGGGGGAGTCTTAGGAAGAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTAGAGCAAAGGTTCCTGCCTGGGGGAGTCTTAGGAAGAAGAAAC  150

seq1  TAGCTGTGGGGTAGGTAGATAGTGAGCACATGGCGATGAGGGCTGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGGGGTAGGTAGATAGTGAGCACATGGCGATGAGGGCTGGCCTG  200

seq1  ATGGAGTAGGAGTGGCCCAGGCAGAACATGGCAAGTGATACCTCAGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTAGGAGTGGCCCAGGCAGAACATGGCAAGTGATACCTCAGGGGT  250

seq1  CACTACAGGAAAGTAGTCAAAATAGCATAGAGGGTTGATACCTACCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGGAAAGTAGTCAAAATAGCATAGAGGGTTGATACCTACCCAGA  300

seq1  TCTCGTGCTTCTAAGCTGAAGGTTTCTATGTCTTTTATCTGGAAACAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGCTTCTAAGCTGAAGGTTTCTATGTCTTTTATCTGGAAACAATA  350

seq1  TAGTCTGAAGTGTAATAGATATTTAAAGACAACATGGGGTGTGGCAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGAAGTGTAATAGATATTTAAAGACAACATGGGGTGTGGCAACCC  400

seq1  CCAGAGTAATAAGTACCACAATACTTGACTATCTAAGTACCATTCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTAATAAGTACCACAATACTTGACTATCTAAGTACCATTCTTTCC  450

seq1  CTCAGATTCTGCATTCGAACATCACCATGGCTTCAGTCATCTTACTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTCTGCATTCGAACATCACCATGGCTTCAGTCATCTTACTCAAC  500

seq1  TCTTTGAAGAACAGTAGTATTCTTGTTTTCCCTGGCTTCATGCTTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAGAACAGTAGTATTCTTGTTTTCCCTGGCTTCATGCTTTTCCT  550

seq1  CTGTCTTACTTTTCTATCCCTGTCTCAAGCGTCAGCCTTGTCTTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTACTTTTCTATCCCTGTCTCAAGCGTCAGCCTTGTCTTTTGTTT  600

seq1  TTCAGACATGTCATAATTTTTTCTGAAAGGCAAATATAGCTCAATATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACATGTCATAATTTTTTCTGAAAGGCAAATATAGCTCAATATCAT  650

seq1  TGGACCGATGACTCGCAAGTTTCCACATCTATCTTTACCCCAAAATAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCGATGACTCGCAAGTTTCCACATCTATCTTTACCCCAAAATAGTA  700

seq1  TCCAGTGAGAGATGTCCAGGTAGAATGAAACTATGATCTTTAAAATACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGAGAGATGTCCAGGTAGAATGAAACTATGATCTTTAAAATACCA  750

seq1  TGCCATAACTTCCTATTTATAACCTTCCTGTCTTTCCAGATATCTTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAACTTCCTATTTATAACCTTCCTGTCTTTCCAGATATCTTTGTG  800

seq1  AGCACATAAATTTCATCCCTTTGACTTGTGATTCATAAATCAATTCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATAAATTTCATCCCTTTGACTTGTGATTCATAAATCAATTCATTT  850

seq1  ATTCATTACCTTGTCCAATAAGCATTTGCCAAGTGTGTATTCTGCATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTACCTTGTCCAATAAGCATTTGCCAAGTGTGTATTCTGCATGGA  900

seq1  GTTCTAGGCAAGGCAGAGGCAGTACAAGAGCAAATGACCTACCTTGAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGCAAGGCAGAGGCAGTACAAGAGCAAATGACCTACCTTGAGTC  950

seq1  TGACACTGAAGGTTTTCCATCCATCATTATCCCCCTCACACAAACTCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGAAGGTTTTCCATCCATCATTATCCCCCTCACACAAACTCTTC  1000

seq1  TCCCAACATTTCTAAGAGCTGAAGTCTAATTTCCATCATTCACATTAACA  1050
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CCAACATTTCTAAGAGCTGAAGTCTAATTTCCATCATTCACATTAACA  1049

seq1  AG--TTTTTTCTTACC-TCT-GTG-TCTTTGGTCTTTGTTCTTCCTG-CC  1094
      ||  |||||||||||| ||| ||| ||||||| | |||||||||||| ||
seq2  AGGTTTTTTTCTTACCTTCTGGTGTTCTTTGGGCCTTGTTCTTCCTGCCC  1099

seq1  TGG--AATAACTT-CCTCCCA-TTTTTCTGCCCACTTAAGAGTGCATA--  1138
      |||  | |||||| ||||||| ||||||||||||||||  ||||||||  
seq2  TGGGAATTAACTTCCCTCCCATTTTTTCTGCCCACTTAGAAGTGCATATA  1149

seq1  -TTTC-CTACAAATCA-TGTG-TATTTCAAAAT-GTTAT-CAT--GATTC  1180
       ||||  ||||||||| |||| |||||| |||| | ||| |||   ||||
seq2  TTTTCTTTACAAATCATTGTGTTATTTCCAAATGGGTATACATTGAATTC  1199

seq1  CATTTCCAAGTTCTG--CATCCTTGTAGGACAT---TGTGATCCA-GTGG  1224
      || |||  |||||||  ||  |||||||  | |   ||| || || ||||
seq2  CAATTC--AGTTCTGCTCACTCTTGTAGAGCCTGTGTGTAATTCAGGTGG  1247

seq1  T-CCCTTCTTTTGCTG  1239
      | ||||||||||||||
seq2  TGCCCTTCTTTTGCTG  1263

seq1: chr9_41759077_41760202
seq2: B6Ng01-070F15.g_69_1191 (reverse)

seq1  TCTTCTCTGAAAAAGGACCTCTTCCCAA-TTATAGACCCAAGACTGGCTA  49
      ||||||||| |||  || |||||||||| ||||||| ||||| |||||||
seq2  TCTTCTCTGGAAA--GA-CTCTTCCCAATTTATAGA-CCAAGGCTGGCTA  46

seq1  GCAGGGCACTC-GCAGTTGGA-GTTCCATTAAGCAAACAACCCCTTGTGC  97
      ||||||||||| |||| |||| ||||||||||||||   ||||||   ||
seq2  GCAGGGCACTCGGCAGGTGGAGGTTCCATTAAGCAA--CACCCCTGTGGC  94

seq1  TAAAGA-GATCGTGTGTCG-CAGGCTCACTTAGAGGAACGCTCATTTAAG  145
      |||||| ||||| |  ||| ||||||||| |||||| |||||||||||||
seq2  TAAAGAGGATCGGGGTTCGCCAGGCTCAC-TAGAGG-ACGCTCATTTAAG  142

seq1  GAAGATTGTTTTATTTTGCGGGAGATGAAGGAAACACACAACTCTGGGTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTGTTTTATTTTGCGGGAGATGAAGGAAACACACAACTCTGGGTT  192

seq1  CTGTCGGCACATTGCTGAACTGCAAGTCACGTGCCAGATCCAAAAATGAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGGCACATTGCTGAACTGCAAGTCACGTGCCAGATCCAAAAATGAT  242

seq1  GAAAACATCTGTTTTTGCTTTAGCCCAGCGAGGCCCCGACGGTGGGGAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATCTGTTTTTGCTTTAGCCCAGCGAGGCCCCGACGGTGGGGAGG  292

seq1  GGCAGGGAAGGGACCGTGGTGGCTTTGCTCATGAGCGCCATCTGCCGAGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGAAGGGACCGTGGTGGCTTTGCTCATGAGCGCCATCTGCCGAGC  342

seq1  CTGCCGGGGAAACGCGTGAGATCCCGGCACAATGCAAGTTGCCGCTCACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGGGGAAACGCGTGAGATCCCGGCACAATGCAAGTTGCCGCTCACC  392

seq1  CCCGGGGAAAGGAGAGATCAACAGGTGGGGGTCTGTGCCCGGGAGACCAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGAAAGGAGAGATCAACAGGTGGGGGTCTGTGCCCGGGAGACCAC  442

seq1  TCTCCTCGGAGGGCAACCCTGGCAGTGCCCTGGGAACTCTGCAACTCTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCGGAGGGCAACCCTGGCAGTGCCCTGGGAACTCTGCAACTCTGA  492

seq1  GTTGTCTCGGGGTGTTCTCAACAAAGAGATCTTTCCCTGGTGACTGCTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTCGGGGTGTTCTCAACAAAGAGATCTTTCCCTGGTGACTGCTCT  542

seq1  GGGGCAGAGGAAGAGACCGAGGGTGGCAGCGAATGAATTCTCAGGTTGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAGGAAGAGACCGAGGGTGGCAGCGAATGAATTCTCAGGTTGGA  592

seq1  AAGGAAGGCGGTAAGGGGGAGGGGAGGGGCTCTTGGTGTGCAGACAGTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGCGGTAAGGGGGAGGGGAGGGGCTCTTGGTGTGCAGACAGTAA  642

seq1  AATTTGCGGTTCGTGCCGGCTGAAATCTCCCAGAACAAAGAAACCACTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCGGTTCGTGCCGGCTGAAATCTCCCAGAACAAAGAAACCACTTC  692

seq1  CCAGCTCCCGCCCTGCACTCCCACCAACCAGCTCTCTTTCCTGCTATGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCCGCCCTGCACTCCCACCAACCAGCTCTCTTTCCTGCTATGGT  742

seq1  TGTGCAGTAGGTCTGAGAATGCTCCAGAGTTCAGAGATACTACTGTCGTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTAGGTCTGAGAATGCTCCAGAGTTCAGAGATACTACTGTCGTC  792

seq1  AGGCAGAGCTTGTCCATCCCTTTCTGTGTAACTCGTCCACCCTCAAAAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCTTGTCCATCCCTTTCTGTGTAACTCGTCCACCCTCAAAAAG  842

seq1  CCAGTGGTGGATCCCAGCTCTGAACAGGGACCTCACTGACAGCCATGACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGTGGATCCCAGCTCTGAACAGGGACCTCACTGACAGCCATGACA  892

seq1  TACAACCTTAGCGTTTTGTTCAGTCTTCCCCAAGTTATTCATTGCTTGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCTTAGCGTTTTGTTCAGTCTTCCCCAAGTTATTCATTGCTTGCC  942

seq1  TGCCAAGTGCCTAACACTCCGCACAAGTGTTTGCAAGAAGTATATATGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTGCCTAACACTCCGCACAAGTGTTTGCAAGAAGTATATATGTG  992

seq1  TACAAATACGTCAGAGGAAAACGTGTGCGTGTCAGCGTTACACACAATGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATACGTCAGAGGAAAACGTGTGCGTGTCAGCGTTACACACAATGA  1042

seq1  CAGCTAGGACCTCAGAGGCAGGGAGAAGAGTACAGACTAGGGAGGGATGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGACCTCAGAGGCAGGGAGAAGAGTACAGACTAGGGAGGGATGT  1092

seq1  AGAATCCACCTTTGGTCTCAGTGAGGAATTC  1126
      |||||||||||||||||||||||||||||||
seq2  AGAATCCACCTTTGGTCTCAGTGAGGAATTC  1123