BAC Information

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BAC

Clone NameB6Ng01-070H03
Chromosome9 (Build37)
Map Location 54,244,036 - 54,405,069
singlet/doubletdoublet
Overlap geneDmxl2, 4933412E14Rik, Cib2
Upstream geneAtm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn
Downstream geneIdh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070H03.bB6Ng01-070H03.g
ACCDH888449DH888450
length4931,242
definitionDH888449|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H03, 5' end.DH888450|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,404,573 - 54,405,069)(54,244,036 - 54,245,285)
sequence
gaattctttcaaatccagctaggcttatgtcataaggctgtcatggggat
cgactcaggccattctggagcctgacctccagccattcagtgattggtaa
ggccattcccaggctgggttggcagagccagagaggagtcccatctcctt
tacacaacacagatagttgaccactgctataggcaggccaagtagataag
aagcagaggccagacagagctcttgagttgagatgggagggaagggattg
gaagggctggagaggagggggaattggtggcacataccttggaggcagaa
ttaaattttggaaatcacctccaggcttttactagtaactagaagatccc
agcctggactgtttggtgcttccataatcatgaatctaattcttccagtc
aaaacccccccatattttttgacttcatgtagacggggaaataaaaccag
gctggtgcaaacatgacatgaaattggcatttatattccctcg
gaattcctcaccaggccactgagcaggagctgagtttggtgttgcatgct
cttcgatgctttctgtcctgaggcgtcgtcgatcacttagaagaagccct
tgataggccattcctgtgaactgatttccttccgactgactgctaaaaca
aacaggctcagctgccacccaggcagaggtagtgaacactatgccttaca
taaatctattttagatgattacaaaaaaaataagtttttatgactgagtt
cacttttatattgagaatttattttagaatgttcttgaaattagttacaa
atgtttattaatagtcttttaaaacaaattatcagtttttattatcctgg
gcagatgacttaaattttcagaagcttaatatcttaagatactttctatc
tgagttcactttttaaagctggaggttactgttagcaggggacacagtag
acaaagctcttctgggccccagtttattgaaatccttacctctgcagaag
tgcttaagcatagccatacattcaaactgtgagctagaagctagggactt
acatctgaggaatatccaaacctaacaccattgtccttcaaaactggctc
cctcctctaaggagctttgtgagatggaggaaacagacaagcagagggta
gagctggctgcagagaggaagtccaagctgagcctaaagcacacacttga
cagcaacgtctctaaacctcattcggtgccattttaaccagcagtgactg
acaggagacaatagtcattgatgaccatgaccatatcaactaaatcaaac
tttcttccttactcataatttcaaatctttggagtcatttaagtatgggt
taattagaataaaatcagagtgcagaccatttttagagagcaactgttta
atatcacatgttcccataaaaggcagctaaccttatttaaaaggtctaga
catatattcatgtagatatacgtctattaaatgtttgcacttactaatat
gcttcattttaatctaggtcatctttccaagtgattttattctcataact
acactaccctagaatattaaaattgcaaagtataaccagatgcaggcaat
tgacattttacaaaaactcaagcatattttgtgatgcagacccgctatca
ggaagctggaaagaagaattcacagctcaaaggactatggtgatttccag
ccagccttgccaattggctatctccaaagctaagggctgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54404573_54405069
seq2: B6Ng01-070H03.b_47_539 (reverse)

seq1  CGAGGGACTCTAAATTGCCAATTTCATTTCATCTTTGGCACCACCCTGGT  50
      ||||||| | |||| |||||||||||| |||| ||| |||||| ||||||
seq2  CGAGGGAATATAAA-TGCCAATTTCATGTCATGTTT-GCACCAGCCTGGT  48

seq1  GTTATTTCCCTGTCTTACA-GAAGTGATAATTGTGTTGGGGGGGGCAAGA  99
       ||||||||| ||| |||| ||||| | ||      ||||||||    ||
seq2  TTTATTTCCCCGTC-TACATGAAGTCAAAA--AATATGGGGGGGTTTTGA  95

seq1  CTGGAAGAATTGGGGTCAGGATTATGGAAGCACCAAACAGGCCAGGCTGG  149
      ||||||||||| |  ||| ||||||||||||||||||||| |||||||||
seq2  CTGGAAGAATTAGATTCATGATTATGGAAGCACCAAACAGTCCAGGCTGG  145

seq1  GATCTTCTAGTTACTAGTAAAAGCCTGGAGGTGATTTCCAAAATTTAATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTAGTTACTAGTAAAAGCCTGGAGGTGATTTCCAAAATTTAATT  195

seq1  CTGCCTCCAACGTATGTGCCACCAATTCCCCCTCCTCTCCAGCCCTTCCA  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCAAGGTATGTGCCACCAATTCCCCCTCCTCTCCAGCCCTTCCA  245

seq1  ATCCCTTCCCTCCCATCTCAACTCAAGAGCTCTGTCTGGCCTCTGCTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCCCTCCCATCTCAACTCAAGAGCTCTGTCTGGCCTCTGCTTCT  295

seq1  TATCTACTTGGCCTGCCTATAGCAGTGGTCAACTATCTGTGTTGTGTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTTGGCCTGCCTATAGCAGTGGTCAACTATCTGTGTTGTGTAAA  345

seq1  GGAGATGGGACTCCTCTCTGGCTCTGCCAACCCAGCCTGGGAATGGCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGGACTCCTCTCTGGCTCTGCCAACCCAGCCTGGGAATGGCCTT  395

seq1  ACCAATCACTGAATGGCTGGAGGTCAGGCTCCAGAATGGCCTGAGTCGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCACTGAATGGCTGGAGGTCAGGCTCCAGAATGGCCTGAGTCGAT  445

seq1  CCCCATGACAGCCTTATGACATAAGCCTAGCTGGATTTGAAAGAATTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGACAGCCTTATGACATAAGCCTAGCTGGATTTGAAAGAATTC  493

seq1: chr9_54244036_54245285
seq2: B6Ng01-070H03.g_63_1304

seq1  GAATTCCTCACCAGGCCACTGAGCAGGAGCTGAGTTTGGTGTTGCATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACCAGGCCACTGAGCAGGAGCTGAGTTTGGTGTTGCATGCT  50

seq1  CTTCGATGCTTTCTGTCCTGAGGCGTCGTCGATCACTTAGAAGAAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGATGCTTTCTGTCCTGAGGCGTCGTCGATCACTTAGAAGAAGCCCT  100

seq1  TGATAGGCCATTCCTGTGAACTGATTTCCTTCCGACTGACTGCTAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCCATTCCTGTGAACTGATTTCCTTCCGACTGACTGCTAAAACA  150

seq1  AACAGGCTCAGCTGCCACCCAGGCAGAGGTAGTGAACACTATGCCTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTCAGCTGCCACCCAGGCAGAGGTAGTGAACACTATGCCTTACA  200

seq1  TAAATCTATTTTAGATGATTACAAAAAAAATAAGTTTTTATGACTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTATTTTAGATGATTACAAAAAAAATAAGTTTTTATGACTGAGTT  250

seq1  CACTTTTATATTGAGAATTTATTTTAGAATGTTCTTGAAATTAGTTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTATATTGAGAATTTATTTTAGAATGTTCTTGAAATTAGTTACAA  300

seq1  ATGTTTATTAATAGTCTTTTAAAACAAATTATCAGTTTTTATTATCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATTAATAGTCTTTTAAAACAAATTATCAGTTTTTATTATCCTGG  350

seq1  GCAGATGACTTAAATTTTCAGAAGCTTAATATCTTAAGATACTTTCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGACTTAAATTTTCAGAAGCTTAATATCTTAAGATACTTTCTATC  400

seq1  TGAGTTCACTTTTTAAAGCTGGAGGTTACTGTTAGCAGGGGACACAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCACTTTTTAAAGCTGGAGGTTACTGTTAGCAGGGGACACAGTAG  450

seq1  ACAAAGCTCTTCTGGGCCCCAGTTTATTGAAATCCTTACCTCTGCAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTCTTCTGGGCCCCAGTTTATTGAAATCCTTACCTCTGCAGAAG  500

seq1  TGCTTAAGCATAGCCATACATTCAAACTGTGAGCTAGAAGCTAGGGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGCATAGCCATACATTCAAACTGTGAGCTAGAAGCTAGGGACTT  550

seq1  ACATCTGAGGAATATCCAAACCTAACACCATTGTCCTTCAAAACTGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAGGAATATCCAAACCTAACACCATTGTCCTTCAAAACTGGCTC  600

seq1  CCTCCTCTAAGGAGCTTTGTGAGATGGAGGAAACAGACAAGCAGAGGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTAAGGAGCTTTGTGAGATGGAGGAAACAGACAAGCAGAGGGTA  650

seq1  GAGCTGGCTGCAGAGAGGAAGTCCAAGCTGAGCCTAAAGCACACACTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCTGCAGAGAGGAAGTCCAAGCTGAGCCTAAAGCACACACTTGA  700

seq1  CAGCAACGTCTCTAAACCTCATTCGGTGCCATTTTAACCAGCAGTGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACGTCTCTAAACCTCATTCGGTGCCATTTTAACCAGCAGTGACTG  750

seq1  ACAGGAGACAATAGTCATTGATGACCATGACCATATCAACTAAATCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGACAATAGTCATTGATGACCATGACCATATCAACTAAATCAAAC  800

seq1  TTTCTTCCTTACTCATAATTTCAAATCTTTGGAGTCATTTAAGTATGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTTACTCATAATTTCAAATCTTTGGAGTCATTTAAGTATGGGT  850

seq1  TAATTAGAATAAAATCAGAGTGCAGACCATTTTTAGAGAGCAACTGTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGAATAAAATCAGAGTGCAGACCATTTTTAGAGAGCAACTGTTTA  900

seq1  ATATCACATGTTCCCATAAAAGGCAGCTAACCTTATTTAAAAGGTCTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACATGTTCCCATAAAAGGCAGCTAACCTTATTTAAAAGGTCTAGA  950

seq1  CATATATTCATGTAGATATACGTCTATTAAATGTTTGCACTTACTAATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTCATGTAGATATACGTCTATTAAATGTTTGCACTTACTAATAT  1000

seq1  GCTTCATTTTAATCTAGGTCATCTTTCCAAGTGATTTTATTTCTCATAAC  1050
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTTCATTTTAATCTAGGTCATCTTTCCAAGTGATTTTA-TTCTCATAAC  1049

seq1  TTACACTACCCTAG-ATATTAAAA-TGCAAAGTATAACCAGATGCAGGCA  1098
       ||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  -TACACTACCCTAGAATATTAAAATTGCAAAGTATAACCAGATGCAGGCA  1098

seq1  ATTTGACA-TTTACAAAAACTCAAGGCATTATTTGTAGTGCAGACCCCAG  1147
      | |||||| ||||||||||||||| ||||  |||||  |||||||||  |
seq2  A-TTGACATTTTACAAAAACTCAA-GCATATTTTGTGATGCAGACCC--G  1144

seq1  CTATTCAGGAAGCTGAGACAGGAGGA-TCACAAGCTCAAGGAGCTATGGG  1196
      ||| ||||||||||| || || || | |||| ||||||| |  ||||  |
seq2  CTA-TCAGGAAGCTG-GAAAGAAGAATTCAC-AGCTCAAAGGACTAT--G  1189

seq1  GTGAGTTCCAGCCAGCTTGGCCAATTTGCTATCTCAAAAAGCTAAGGTCT  1246
      |||| ||||||||||| | ||||||| ||||||||  |||||||||| ||
seq2  GTGATTTCCAGCCAGCCTTGCCAATTGGCTATCTC-CAAAGCTAAGGGCT  1238

seq1  GGGG  1250
      ||||
seq2  GGGG  1242