BAC Information

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BAC

Clone NameB6Ng01-070L04
Chromosome9 (Build37)
Map Location 62,686,041 - 62,828,640
singlet/doubletdoublet
Overlap geneCln6, Calml4, Pias1
Upstream geneRplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b
Downstream geneLOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070L04.bB6Ng01-070L04.g
ACCDH888622DH888623
length3621,141
definitionDH888622|Mus musculus domesticus DNA, BAC clone: B6Ng01-070L04, 5' end.DH888623|Mus musculus domesticus DNA, BAC clone: B6Ng01-070L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,828,279 - 62,828,640)(62,686,041 - 62,687,198)
sequence
gaattcacttctaatattcggccgcggagacggcgccgcggctgccgggg
ggatgggtcggaccctggggggcccgctcgggccgggctccacccgagtc
tggagttgtaggcgggagaggcgctccgggccttagtggagggggcctgg
ctgcggcgggccgtgggccccgggtgcctcgggggcgctgacgggtcgtc
cccggcgtgttattgttgtgggcgcctctggcgggggtggcggggcgaag
agagagtgagtcgggacgtggcggcagcggcggtccccggggcctgggtg
ccttaccttgcagcccgcctcccccccccccccccatgggcagccagggg
gtgggggggtgt
gaattcactattctcttcacctatcaaagcacagtggatagtttatcgag
cagtctttaatctgaggaaggagggctcaaagaccccgggtcttctgatg
acctcacagcttggtcattccaggtccccggttcaccttcgtccagtacc
ctcaagcccggctaggcaaggcttccttcctgcagaaatgcagagaaccc
aggaaaaaaacaaaagcaagcaaacaaacaaacaaacaagacgccaggct
tccccactggagtgcagattcaactaagacccaagacctctgggacataa
gttaggcccctccttctcaaacaaaacacgccctccagctgtctccctcc
acctccgctctctcattcctcctccctcctccccacactccatcctcctc
tccggtcttgccccaagcccctccctatcctcctcccttcaccagttctc
cccctgctctttcctccagcttctctcctccctcctcccctccagcctcc
agctcctcccctcccctcccgcccgccctggggccccgcgctcgcttccc
tctctcccgcccagccttccccgcgttgggcgccgaggctccgcgcggcc
cgcgcagccgtctctcctcccggaaggcgaggccgagcgtggcggccatg
gaggcggcgacgcggaggcggcagctcctcggagcggcgggcggccccgg
tgtcgcgttcgtgcaggccaggtgcgcgcggagcggggacagggaggccg
cgaggggccccagagtttgagagacctcgccagggttaaggaaaccgcag
ggataggctactcgggggccaccccggccagcctggctgagtccctgtgc
cacttccaagtttttaggaacctcctgctctgggcaagactgtgactctg
ctctgaatccggtggctcaggcccagggaaagtgggccgttaaccgggga
cagcgtgactctccatcctgaatgagagacccttccctcagagggagatg
tttgggggttatctggctcgacaggcagagcagaagcgcaaacccgccct
ttcatcttttctcagtctgctccatcgctccactgactagcattccgctt
gttccattgtattgattaacctgtcatgtgctagcgttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_62828279_62828640
seq2: B6Ng01-070L04.b_42_403 (reverse)

seq1  ACACCCCCCCACCCCCTGGCTGCCCATGGGGGGGGGGGGGGGAGGCGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCCCACCCCCTGGCTGCCCATGGGGGGGGGGGGGGGAGGCGGGC  50

seq1  TGCAAGGTAAGGCACCCAGGCCCCGGGGACCGCCGCTGCCGCCACGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTAAGGCACCCAGGCCCCGGGGACCGCCGCTGCCGCCACGTCCC  100

seq1  GACTCACTCTCTCTTCGCCCCGCCACCCCCGCCAGAGGCGCCCACAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACTCTCTCTTCGCCCCGCCACCCCCGCCAGAGGCGCCCACAACAA  150

seq1  TAACACGCCGGGGACGACCCGTCAGCGCCCCCGAGGCACCCGGGGCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACGCCGGGGACGACCCGTCAGCGCCCCCGAGGCACCCGGGGCCCAC  200

seq1  GGCCCGCCGCAGCCAGGCCCCCTCCACTAAGGCCCGGAGCGCCTCTCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGCCGCAGCCAGGCCCCCTCCACTAAGGCCCGGAGCGCCTCTCCCG  250

seq1  CCTACAACTCCAGACTCGGGTGGAGCCCGGCCCGAGCGGGCCCCCCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAACTCCAGACTCGGGTGGAGCCCGGCCCGAGCGGGCCCCCCAGGG  300

seq1  TCCGACCCATCCCCCCGGCAGCCGCGGCGCCGTCTCCGCGGCCGAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGACCCATCCCCCCGGCAGCCGCGGCGCCGTCTCCGCGGCCGAATATT  350

seq1  AGAAGTGAATTC  362
      ||||||||||||
seq2  AGAAGTGAATTC  362

seq1: chr9_62686041_62687198
seq2: B6Ng01-070L04.g_68_1208

seq1  GAATTCACTATTCTCTTCACCTATCAAAGCACAGTGGATAGTTTATCGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTCTCTTCACCTATCAAAGCACAGTGGATAGTTTATCGAG  50

seq1  CAGTCTTTAATCTGAGGAAGGAGGGCTCAAAGACCCCGGGTCTTCTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTAATCTGAGGAAGGAGGGCTCAAAGACCCCGGGTCTTCTGATG  100

seq1  ACCTCACAGCTTGGTCATTCCAGGTCCCCGGTTCACCTTCGTCCAGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACAGCTTGGTCATTCCAGGTCCCCGGTTCACCTTCGTCCAGTACC  150

seq1  CTCAAGCCCGGCTAGGCAAGGCTTCCTTCCTGCAGAAATGCAGAGAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCCGGCTAGGCAAGGCTTCCTTCCTGCAGAAATGCAGAGAACCC  200

seq1  AGGAAAAAAACAAAAGCAAGCAAACAAACAAACAAACAAGACGCCAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAACAAAAGCAAGCAAACAAACAAACAAACAAGACGCCAGGCT  250

seq1  TCCCCACTGGAGTGCAGATTCAACTAAGACCCAAGACCTCTGGGACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTGGAGTGCAGATTCAACTAAGACCCAAGACCTCTGGGACATAA  300

seq1  GTTAGGCCCCTCCTTCTCAAACAAAACACGCCCTCCAGCTGTCTCCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCCCCTCCTTCTCAAACAAAACACGCCCTCCAGCTGTCTCCCTCC  350

seq1  ACCTCCGCTCTCTCATTCCTCCTCCCTCCTCCCCACACTCCATCCTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCGCTCTCTCATTCCTCCTCCCTCCTCCCCACACTCCATCCTCCTC  400

seq1  TCCGGTCTTGCCCCAAGCCCCTCCCTATCCTCCTCCCTTCACCAGTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTCTTGCCCCAAGCCCCTCCCTATCCTCCTCCCTTCACCAGTTCTC  450

seq1  CCCCTGCTCTTTCCTCCAGCTTCTCTCCTCCCTCCTCCCCTCCAGCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTCTTTCCTCCAGCTTCTCTCCTCCCTCCTCCCCTCCAGCCTCC  500

seq1  AGCTCCTCCCCTCCCCTCCCGCCCGCCCTGGGGCCCCGCGCTCGCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCCCCTCCCCTCCCGCCCGCCCTGGGGCCCCGCGCTCGCTTCCC  550

seq1  TCTCTCCCGCCCAGCCTTCCCCGCGTTGGGCGCCGAGGCTCCGCGCGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCGCCCAGCCTTCCCCGCGTTGGGCGCCGAGGCTCCGCGCGGCC  600

seq1  CGCGCAGCCGTCTCTCCTCCCGGAAGGCGAGGCCGAGCGTGGCGGCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCAGCCGTCTCTCCTCCCGGAAGGCGAGGCCGAGCGTGGCGGCCATG  650

seq1  GAGGCGGCGACGCGGAGGCGGCAGCTCCTCGGAGCGGCGGGCGGCCCCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGCGACGCGGAGGCGGCAGCTCCTCGGAGCGGCGGGCGGCCCCGG  700

seq1  TGTCGCGTTCGTGCAGGCCAGGTGCGCGCGGAGCGGGGACAGGGAGGCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCGTTCGTGCAGGCCAGGTGCGCGCGGAGCGGGGACAGGGAGGCCG  750

seq1  CGAGGGGCCCCAGAGTTTGAGAGACCTCGCCAGGGTTAAGGAAACCGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGGCCCCAGAGTTTGAGAGACCTCGCCAGGGTTAAGGAAACCGCAG  800

seq1  GGATAGGCTACTCGGGGGCCACCCCGGCCAGCCTGGCTGAGTCCCTGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGCTACTCGGGGGCCACCCCGGCCAGCCTGGCTGAGTCCCTGTGC  850

seq1  CACTTCCAAGTTTTTAGGAACCTCCTGCTCTGGGCAAGACTGTGACTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCAAGTTTTTAGGAACCTCCTGCTCTGGGCAAGACTGTGACTCTG  900

seq1  CTCTGAATCCGGTGGCTCAGGGCCCAGGGAAAGTGGGCCGTTAACCGGGG  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCTGAATCCGGTGGCTCA-GGCCCAGGGAAAGTGGGCCGTTAACCGGGG  949

seq1  ACAGCGTGACTCTCCCATCCTGAATGAGAGACCCCTTCCCTCAGAGGGGA  1000
      ||||||||||||| ||||||||||||||||| ||||||||||||| ||||
seq2  ACAGCGTGACTCT-CCATCCTGAATGAGAGA-CCCTTCCCTCAGA-GGGA  996

seq1  GATGTTTGGGGTTTATCTGGCTCGACAGGGCAGAGCCAGAGGCGCAAAAC  1050
      ||||||||||| ||||||||||||||| ||||||| |||| |||| ||||
seq2  GATGTTTGGGGGTTATCTGGCTCGACA-GGCAGAG-CAGAAGCGC-AAAC  1043

seq1  CCGCCCTTTCATCTTTTCCTCCAGTCTGCCTCCATCCGCTCCACTGACCA  1100
      ||||||||||||||||||   ||||||| |||||| ||||||||||||  
seq2  CCGCCCTTTCATCTTTTC--TCAGTCTG-CTCCAT-CGCTCCACTGAC--  1087

seq1  AAGCATTCCCGCCTGTCACA-TGTATTGATTAAACACCTGTCATGTGCCT  1149
       |||||| |||| |||  || |||||||||||   |||||||||||| ||
seq2  TAGCATT-CCGCTTGTTCCATTGTATTGATTA---ACCTGTCATGTG-CT  1132

seq1  AGCGTTGTG  1158
      |||||||||
seq2  AGCGTTGTG  1141