BAC Information

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BAC

Clone NameB6Ng01-071E03
Chromosome9 (Build37)
Map Location 101,868,366 - 102,044,070
singlet/doubletdoublet
Overlap geneEphb1
Upstream genePccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099, 9630041A04Rik
Downstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071E03.bB6Ng01-071E03.g
ACCDH889008DH889009
length1,120352
definitionDH889008|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E03, 5' end.DH889009|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,868,366 - 101,869,498)(102,043,719 - 102,044,070)
sequence
gaattccctctatgaaggactgtgatatttgaaataaaacaaacccttcc
tccataagttgcttttggtcaatgtgttagcacagcaacggagaagcaaa
gtaggacacgccccgtgggctgggctgcccttgactcacttcctaaccgc
caggaatgctttgtatgtggcattttcttctaaggatcgaaaacaaaagt
gccacgttggtttgtggaaagactgacagatttgtccatctgtgaaggat
gaatgtcccagggatgattcaaatcctcctccggagggaacttccatcag
caccttctaccgaagccagccagtcccgcaggagtacccagccctttccc
cgagcactttgctgggagatctgtccttcagaatgtccccatgaaacttc
tatagattcaaaatgtccccaggcaacttctatagattcagaatgtcccc
aggcaacttctatagattctgaagctgtgccccagcttcaagtcacacag
gctggattttattcaaatgctatttttcttatttcttcttcatatgtgta
ggtgacattataatgaaaaattggtatcccactaaagccctcactcaccc
tggagaggaacagtgtgcttacccacaatgagaaaggtgtgggcaagcat
atagagtgatgtctgaagttttgctaaagtttgctgcagtatttattcct
ggttttgtttaaaatttagaccaggtatcgctatagcttctggggtgaac
agaggccagaagtggctaaacatttggtgtctggatccaaatagatgcag
actggacccagtctctgctgttcattggcctgatcacgtgatttagccta
cagagtggtgatccccatagctaaatcttaagagcccagtgtcctccctt
cctggactctgtggaggttcaacgtgatcaaaggttagaagtcttcattt
ggggctttgtgctgccctgatgtcatcagtgatcatggtacccaagagcc
aggctgtcccttccttccagtcacctcctctatggacctcaatgctccgg
tgaggatctgggtcagtttagaattctggtgttttctgattgtgaagaac
ctctctgcattgctcttgga
tcatcccagtgcctaagtgtgttaggaaaagaggccatctttgctcggcc
atcaccttctgcctctatggccaccactctctggaacactcggccacatg
gctcagattcatttagctttggaagggtgcctatcttatttccaaacatc
ttcctctccctagaaactgcccccagcttccctggtaaccaggagctaaa
cttatgctggcagcagtatttcttcttgggtgtgggtttagcaaattgta
aacactagaagttaacattgactcaacaacatatcaggcaggagagttta
cttctgacaccacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_101868366_101869498
seq2: B6Ng01-071E03.b_42_1161

seq1  GAATTCCCTCTATGAAGGACTGTGATATTTGAAATAAAACAAACCCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTATGAAGGACTGTGATATTTGAAATAAAACAAACCCTTCC  50

seq1  TCCATAAGTTGCTTTTGGTCAATGTGTTAGCACAGCAACGGAGAAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGTTGCTTTTGGTCAATGTGTTAGCACAGCAACGGAGAAGCAAA  100

seq1  GTAGGACACGCCCCGTGGGCTGGGCTGCCCTTGACTCACTTCCTAACCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACACGCCCCGTGGGCTGGGCTGCCCTTGACTCACTTCCTAACCGC  150

seq1  CAGGAATGCTTTGTATGTGGCATTTTCTTCTAAGGATCGAAAACAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGCTTTGTATGTGGCATTTTCTTCTAAGGATCGAAAACAAAAGT  200

seq1  GCCACGTTGGTTTGTGGAAAGACTGACAGATTTGTCCATCTGTGAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGTTGGTTTGTGGAAAGACTGACAGATTTGTCCATCTGTGAAGGAT  250

seq1  GAATGTCCCAGGGATGATTCAAATCCTCCTCCGGAGGGAACTTCCATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCCAGGGATGATTCAAATCCTCCTCCGGAGGGAACTTCCATCAG  300

seq1  CACCTTCTACCGAAGCCAGCCAGTCCCGCAGGAGTACCCAGCCCTTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTACCGAAGCCAGCCAGTCCCGCAGGAGTACCCAGCCCTTTCCC  350

seq1  CGAGCACTTTGCTGGGAGATCTGTCCTTCAGAATGTCCCCATGAAACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCACTTTGCTGGGAGATCTGTCCTTCAGAATGTCCCCATGAAACTTC  400

seq1  TATAGATTCAAAATGTCCCCAGGCAACTTCTATAGATTCAGAATGTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTCAAAATGTCCCCAGGCAACTTCTATAGATTCAGAATGTCCCC  450

seq1  AGGCAACTTCTATAGATTCTGAAGCTGTGCCCCAGCTTCAAGTCACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTTCTATAGATTCTGAAGCTGTGCCCCAGCTTCAAGTCACACAG  500

seq1  GCTGGATTTTATTCAAATGCTATTTTTCTTATTTCTTCTTCATATGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTTTATTCAAATGCTATTTTTCTTATTTCTTCTTCATATGTGTA  550

seq1  GGTGACATTATAATGAAAAATTGGTATCCCACTAAAGCCCTCACTCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATTATAATGAAAAATTGGTATCCCACTAAAGCCCTCACTCACCC  600

seq1  TGGAGAGGAACAGTGTGCTTACCCACAATGAGAAAGGTGTGGGCAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGAACAGTGTGCTTACCCACAATGAGAAAGGTGTGGGCAAGCAT  650

seq1  ATAGAGTGATGTCTGAAGTTTTGCTAAAGTTTGCTGCAGTATTTATTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGATGTCTGAAGTTTTGCTAAAGTTTGCTGCAGTATTTATTCCT  700

seq1  GGTTTTGTTTAAAATTTAGACCAGGTATCGCTATAGCTTCTGGGGTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTTAAAATTTAGACCAGGTATCGCTATAGCTTCTGGGGTGAAC  750

seq1  AGAGGCCAGAAGTGGCTAAACATTTGGTGTCTGGATCCAAATAGATGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAGAAGTGGCTAAACATTTGGTGTCTGGATCCAAATAGATGCAG  800

seq1  ACTGGACCCAGTCTCTGCTGTTCATTGGCCTGATCACGTGATTTAGCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACCCAGTCTCTGCTGTTCATTGGCCTGATCACGTGATTTAGCCTA  850

seq1  CAGAGTGGTGATCCCCATAGCTAAATCTTAAGAGCCCAGTGTCCTCCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGTGATCCCCATAGCTAAATCTTAAGAGCCCAGTGTCCTCCCTT  900

seq1  CCTGGACTCTGTGGAGGTTCAACGTGATCAAAGGTTAGAAGTCTTCATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACTCTGTGGAGGTTCAACGTGATCAAAGGTTAGAAGTCTTCATTT  950

seq1  GGGGCTTTGTGCTGCCCTGATGTCATCAGTGATCATGGTACCCAAGAGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTGTGCTGCCCTGATGTCATCAGTGATCATGGTACCCAAGAGCC  1000

seq1  AGGCTGTCCCTTCCTCCCAGTCACCTCCTCTATGGACCTCAAATGCTCCG  1050
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  AGGCTGTCCCTTCCTTCCAGTCACCTCCTCTATGGACCTC-AATGCTCCG  1049

seq1  GTTGAGGGAATCTGGGGTCCAGTTCTAGATTCCTGGTGTTTTTCTGAATG  1100
      | |||||  |||||||   ||||| |||| | |||||| |||||||| ||
seq2  G-TGAGG--ATCTGGG--TCAGTT-TAGAATTCTGGTG-TTTTCTGATTG  1092

seq1  TGTGAAAGACACTCTCTGGCCATTGCTCTTGGA  1133
      ||   ||||  |||||||  |||||||||||||
seq2  TG---AAGAACCTCTCTG--CATTGCTCTTGGA  1120

seq1: chr9_102043719_102044070
seq2: B6Ng01-071E03.g_71_422 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACGTGGTGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACGTGGTGTCAGA  50

seq1  AGTAAACTCTCCTGCCTGATATGTTGTTGAGTCAATGTTAACTTCTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTCTCCTGCCTGATATGTTGTTGAGTCAATGTTAACTTCTAGTG  100

seq1  TTTACAATTTGCTAAACCCACACCCAAGAAGAAATACTGCTGCCAGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATTTGCTAAACCCACACCCAAGAAGAAATACTGCTGCCAGCATA  150

seq1  AGTTTAGCTCCTGGTTACCAGGGAAGCTGGGGGCAGTTTCTAGGGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGCTCCTGGTTACCAGGGAAGCTGGGGGCAGTTTCTAGGGAGAGG  200

seq1  AAGATGTTTGGAAATAAGATAGGCACCCTTCCAAAGCTAAATGAATCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTTGGAAATAAGATAGGCACCCTTCCAAAGCTAAATGAATCTGA  250

seq1  GCCATGTGGCCGAGTGTTCCAGAGAGTGGTGGCCATAGAGGCAGAAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGGCCGAGTGTTCCAGAGAGTGGTGGCCATAGAGGCAGAAGGTG  300

seq1  ATGGCCGAGCAAAGATGGCCTCTTTTCCTAACACACTTAGGCACTGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCGAGCAAAGATGGCCTCTTTTCCTAACACACTTAGGCACTGGGAT  350

seq1  GA  352
      ||
seq2  GA  352