BAC Information

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BAC

Clone NameB6Ng01-071F24
Chromosome9 (Build37)
Map Location 109,467,883 - 109,468,891
singlet/doubletsinglet
Overlap geneFbxw15
Upstream geneImpdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668
Downstream geneEG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071F24.bB6Ng01-071F24.g
ACCDH889093DH889094
length1,2471,001
definitionDH889093|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F24, 5' end.DH889094|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatcagaccgtcaaagaagacctaattccaattctcctcaaact
attccacaaaatagaaacagaaggtactctacccatttcattctatgaaa
ccacaattactctgatacctaaaccatacaaagatccaacaaagaaatag
aacttcagaccaatttcccttatgaatatcgatgcaaaaatattcaataa
aattctcgcaaactgaatccaagaacaaatcaaaacgaccatccatcatg
attaagtaggctttatcacagtgatgccgggatgttttaatatatgaaaa
tccatcaacataatccactatataaacaaactcaaaatcacatgatcatc
ttattagatgtgagaaagcatttaacaaagtccaacacccattcatgatg
aaagacttgggaagatcaggaattcaaggtccatacctatatataataaa
aggaatatacagcaagccagtagccaacattaaactaaatggagagaaac
ttgaagcaatactattaaaatcagggaccagacaaggctgcccacttttg
ccctacctactcaatattgtagctgaattcctaaccatagcaattagaca
acaaaaggatcaaggggatagaaattggaaaggaagaagtcaaaatatct
ctatttgcagatgatatattagtatatataagtgactctaaaaattccac
cagagaactcctaaacctgataaacagcttcagtgaagtagctggatata
aaattaactcaaacaaatcagtggcttttctctacataaaggataaacag
gctgagaaagaaattagggaaacaacacccttcacaatagtcacaaataa
tataaaataccttggtgtgactctaactaaggaagtgaaagatctgtatg
ataagaacttcaagtctctgaagaaagaaattgaagatctcagagatgga
aagatctctgatgctcatggattggcaggattaatatagtaaaatggtta
ttttgccaaaggcaatctacaggttccatgtaatcccatcaattcagctc
aatctcacagagttacaagggcatttgaaattcatctggattacaaaaag
ctaggatattcaaaactattctcaatataaaggactcttggtagaataca
catcctgaacgagcattgataaaacctgcatggactggttgtcgacgtag
tcatggaatagaattgaggatctcgaaatgatgacgcccacacccta
gaattcaccatacagacaacagacttgtcttgtccctttcttgttaagcc
acaccctgagatataacatgcatatccaaaaagtcctgcaaggaaacccc
aacagtatgtgggcagcagacagttgagggacaactcaacctgaaggaca
tatggttcatttccctctgccttgtagaaggcttggataaaagctgtgga
aaagatgaagggaggccaccaagcacactgtaggctggtggttcagacac
atttaccctttaatctgtttctatagatacaaaatgggtctggggcctgg
ggctttgactccctggccagagttctccgttctgttctgaaaggccaata
aacagtaatccattaatcatttggaggcagaaagttccaaagttcaagat
cattggtgtgcattacataaaggatttgaggtctgcctgtgatgcatgac
atcctgtctgaaggaagagagagagaaagaaaggaagggagaaagagaga
aagagagaaaggaagggagaaagagagaaagagagaaaggaagagagaaa
gagaaaggaagagagaaagagaaaggaaggaagagagaaagaaagaaaga
aagaaggaaagaaagaaagaaagagagaaaggaaggaaggaagagagaga
gagagagaaagaaagaaagaaagaaagaaagaaaagaagagagaaagaaa
gaaagaaagaaagaaagaaagaaaggaaggaagaaagaaaggaagggaga
aagaaaggaagggagaaagagagaaagagagagagagaacaaaggaagac
aatcatgtatcattcctagtgaaggcaagcagaagttcttgatttaggcc
agcctcgtctacagatgaaattccagactagccatggctatagagcgagg
ccttatctcaaacaaatggaaaaggaaagattctttcattcaagaaaaca
tatccacaaagttgccttcacactcctacacatacacaccacacacacac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109467883_109468891
seq2: B6Ng01-071F24.g_64_1064

seq1  GAATTCACCATACAGACAACAGACTTGTCTTGTCCCTTTCTTGTTAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATACAGACAACAGACTTGTCTTGTCCCTTTCTTGTTAAGCC  50

seq1  ACACCCTGAGATATAACATGCATATCCAAAAAGTCCTGCAAGGAAACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGAGATATAACATGCATATCCAAAAAGTCCTGCAAGGAAACCCC  100

seq1  AACAGTATGTGGGCAGCAGACAGTTGAGGGACAACTCAACCTGAAGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATGTGGGCAGCAGACAGTTGAGGGACAACTCAACCTGAAGGACA  150

seq1  TATGGTTCATTTCCCTCTGCCTTGTAGAAGGCTTGGATAAAAGCTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTCATTTCCCTCTGCCTTGTAGAAGGCTTGGATAAAAGCTGTGGA  200

seq1  AAAGATGAAGGGAGGCCACCAAGCACACTGTAGGCTGGTGGTTCAGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAAGGGAGGCCACCAAGCACACTGTAGGCTGGTGGTTCAGACAC  250

seq1  ATTTACCCTTTAATCTGTTTCTATAGATACAAAATGGGTCTGGGGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCTTTAATCTGTTTCTATAGATACAAAATGGGTCTGGGGCCTGG  300

seq1  GGCTTTGACTCCCTGGCCAGAGTTCTCCGTTCTGTTCTGAAAGGCCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGACTCCCTGGCCAGAGTTCTCCGTTCTGTTCTGAAAGGCCAATA  350

seq1  AACAGTAATCCATTAATCATTTGGAGGCAGAAAGTTCCAAAGTTCAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAATCCATTAATCATTTGGAGGCAGAAAGTTCCAAAGTTCAAGAT  400

seq1  CATTGGTGTGCATTACATAAAGGATTTGAGGTCTGCCTGTGATGCATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGTGCATTACATAAAGGATTTGAGGTCTGCCTGTGATGCATGAC  450

seq1  ATCCTGTCTGAAGGAAGAGAGAGAGAAAGAAAGGAAGGGAGAAAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCTGAAGGAAGAGAGAGAGAAAGAAAGGAAGGGAGAAAGAGAGA  500

seq1  AAGAGAGAAAGGAAGGGAGAAAGAGAGAAAGAGAGAAAGGAAGAGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAAAGGAAGGGAGAAAGAGAGAAAGAGAGAAAGGAAGAGAGAAA  550

seq1  GAGAAAGGAAGAGAGAAAGAGAAAGGAAGGAAGAGAGAAAGAAAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGAAGAGAGAAAGAGAAAGGAAGGAAGAGAGAAAGAAAGAAAGA  600

seq1  AAGAAGGAAAGAAAGAAAGAAAGAGAGAAAGGAAGGAAGGAAGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAAGAAAGAAAGAAAGAGAGAAAGGAAGGAAGGAAGAGAGAGA  650

seq1  GAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAGAGAGAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAGAGAGAAAGAAA  700

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAAAGGAAGGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAAAGGAAGGGAGA  750

seq1  AAGAAAGGAAGGGAGAAAGAGAGAAAGAGAGAGAGAGAAACAAAAGGAAA  800
      ||||||||||||||||||||||||||||||||||||| ||||||  | ||
seq2  AAGAAAGGAAGGGAGAAAGAGAGAAAGAGAGAGAGAG-AACAAA--GGAA  797

seq1  GACAAATCATGTATCATTCCTAGTGAAGGCAAGCAGAAGTTCTTGATTTT  850
      ||| |||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAC-AATCATGTATCATTCCTAGTGAAGGCAAGCAGAAGTTCTTGA-TTT  845

seq1  AGGCCAGCCTCGTCTACAGATGAAATTCCAGACTAGCCATGGCTATAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTCGTCTACAGATGAAATTCCAGACTAGCCATGGCTATAGAG  895

seq1  CGAGGCCTTATCTCAAAACAAATGGAAAAGGAAAGATTCTTCCATTCAAG  950
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CGAGGCCTTATCTC-AAACAAATGGAAAAGGAAAGATTCTTTCATTCAAG  944

seq1  AAAACATATTCCACAAAGTTGCCTTCACACACACACACATACACACACAC  1000
      |||||||| ||||||||||||||||||||| |  |||||||||||| |||
seq2  AAAACATA-TCCACAAAGTTGCCTTCACACTCCTACACATACACAC-CAC  992

seq1  ACACACACA  1009
      |||||||||
seq2  ACACACACA  1001