BAC Information

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BAC

Clone NameB6Ng01-071G18
Chromosome9 (Build37)
Map Location 118,771,359 - 118,986,456
singlet/doubletdoublet
Overlap geneItga9, LOC100039768, Ctdspl, Vill, Plcd1
Upstream geneLOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4
Downstream geneDlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071G18.bB6Ng01-071G18.g
ACCDH889127DH889128
length8521,015
definitionDH889127|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G18, 5' end.DH889128|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,985,609 - 118,986,456)(118,771,359 - 118,772,379)
sequence
gaattcagaaatccacctgtctctgtctcccaatgtcctgggattaaagg
taccactgcctggcacttcttaggtttttgttgttgtttggttttgctta
tccgttttgagacagaatctcaggtagctcaggttaccctggcactggct
gtgtggctaaggatgacctagaactcccgattgttctgcgacaacctcct
tcctgggtgctgagattacaggatgtacaggcctggcctggggcttagac
ttttttttaaagttatgtaacctctcttatgctgcctgtgctgttgtttc
atgtgtgattaaactctaatgtctttttttttaaacacacgcccatgagg
ttcatcctcttgtctgactcagtgctctgtgagagttagaagcactgtcc
accccgtcagttcctcagcgtctgaacggagaacgtggggtggggtgtgt
gcgcgcatgcgcatttgcaagcatgggggctgagacgtccctggacagga
tgacttgatccaggtttgagtttgcatgggatttctccactttcgtttcc
agcctcaggtaccagaggcatgctggctgaaggtctgataaacccatgct
gtcatcagcaccgtgggaggtgatcaggcggggcagttactgcctgggtt
ccttttcagtagtctaaatgtcctcagtgaaccttttttatagtaaatat
ttttcaaacatcattagggtttcattatgaacaaacagaaaaaagtctct
tagctggggtcttgatggtgcaatcctgtaatcctagctactcgagaaga
tgagacagagggatcacctttttcaaggcctaacgggactatggagcagt
tt
gaattcttccctcattaggaggacacgcccacagacacctccaggagctc
tctgctgtctttaaatggtgggtcattgacacccagaagctgtgttctcg
gcctttcaaagcgtgggtcacataaagctaggtgcatcacagctgaggac
tcaccgggactgttatttccatttccggccttgtattaggcagccccacc
cctgctgggcacgcagaaccaatcaggagtgacccagagcgtctgcttct
ctgtgggtcggaagcaccacaggcttgaagtggacgctgaacatgcaacc
cttcctctgctttaggaaaatcacgtcatctgaccatccatcagacagta
ccgagagacacctggtagccattcgcagccatgtaacttaatacaagata
ttaaagtgggaggcgaccaggaatggaaatgtagttcacatttcgctgaa
tggaacagaatggaattggctcatttatgttaggacaggtacggttaacc
aagtggtatcaggtctcaggcattttaatgagtcccgaaatgaacttccc
cacaactgctgttgaacacagcgagcaagcgccctacggtggaatgggga
tcgccctgtcttctgaccgctccactcccagagtaggtagttggtaattg
aattagcagagctggcattcacaacattctctttggtatcccatctcaaa
aggcgtgtgaattcagagaatttcagaagggcccagcagctaagtctcag
gcccagtcatgtttacccacttgccgtcagctgtgcttaggtaacgtgat
acataaaagtggcccagggaaatgacagggtagcaaatgtcggctgacag
ggaaacaggattaacagaaacacattggtcttgacacaaatgaactgcgc
tgctcaccgtcagctctgggctcgtttcaagtcacttccccaagggctgc
attggagggaaactcaatcaaggtccctgaatggtgcaagttgtttaagt
ttccgcttacttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118985609_118986456
seq2: B6Ng01-071G18.b_33_885 (reverse)

seq1  AAACTTGCTCCATAGTCCCGTTAGGCCTTG-AAATGGTGATCCCTCTGTC  49
      |||| ||||||||||||||||||||||||| ||| |||||||||||||||
seq2  AAAC-TGCTCCATAGTCCCGTTAGGCCTTGAAAAAGGTGATCCCTCTGTC  49

seq1  TCATCTTCTCGAGTAGCTAGGATTACAGGATTGCACCATC-AGA-CCCAG  97
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  TCATCTTCTCGAGTAGCTAGGATTACAGGATTGCACCATCAAGACCCCAG  99

seq1  CTAAGGGACTTTTTTCTGTTTGTTCATTATGAAA-CCTGATGATGTTTG-  145
      ||||| ||||||||||||||||||||| |||||| ||| |||||||||| 
seq2  CTAAGAGACTTTTTTCTGTTTGTTCATAATGAAACCCTAATGATGTTTGA  149

seq1  AAAATATTTACTATAAAAAAGGTTCACTGAGGACATTTAGACTACTGAAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTACTATAAAAAAGGTTCACTGAGGACATTTAGACTACTGAAA  199

seq1  AGGAACCCAGGCAGTAACTGCCCCGCCTGATCACCTCCCACGGTGCTGAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCCAGGCAGTAACTGCCCCGCCTGATCACCTCCCACGGTGCTGAT  249

seq1  GACAGCCTGGGTTTCTCAGACCTTCAGCCAGCATGCCTCTGGTACCTGAG  295
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  GACAGCATGGGTTTATCAGACCTTCAGCCAGCATGCCTCTGGTACCTGAG  299

seq1  GCTGGAAACGAAAGTGGAGAAATCCCATGCAAACTCAAACCTGGATCAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAACGAAAGTGGAGAAATCCCATGCAAACTCAAACCTGGATCAAG  349

seq1  TCATCCTGTCCAGGGACGTCTCAGCCCCCATGCTTGCAAATGCGCATGCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGTCCAGGGACGTCTCAGCCCCCATGCTTGCAAATGCGCATGCG  399

seq1  CGCACACACCCCACCCCACGTTCTCCGTTCAGACGCTGAGGAACTGACGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACACCCCACCCCACGTTCTCCGTTCAGACGCTGAGGAACTGACGG  449

seq1  GGTGGACAGTGCTTCTAACTCTCACAGAGCACTGAGTCAGACAAGAGGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACAGTGCTTCTAACTCTCACAGAGCACTGAGTCAGACAAGAGGAT  499

seq1  GAACCTCATGGGCGTGTGTTTAAAAAAAAAGACATTAGAGTTTAATCACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCATGGGCGTGTGTTTAAAAAAAAAGACATTAGAGTTTAATCACA  549

seq1  CATGAAACAACAGCACAGGCAGCATAAGAGAGGTTACATAACTTTAAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACAACAGCACAGGCAGCATAAGAGAGGTTACATAACTTTAAAAA  599

seq1  AAAGTCTAAGCCCCAGGCCAGGCCTGTACATCCTGTAATCTCAGCACCCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAAGCCCCAGGCCAGGCCTGTACATCCTGTAATCTCAGCACCCA  649

seq1  GGAAGGAGGTTGTCGCAGAACAATCGGGAGTTCTAGGTCATCCTTAGCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGGTTGTCGCAGAACAATCGGGAGTTCTAGGTCATCCTTAGCCA  699

seq1  CACAGCCAGTGCCAGGGTAACCTGAGCTACCTGAGATTCTGTCTCAAAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAGTGCCAGGGTAACCTGAGCTACCTGAGATTCTGTCTCAAAAC  749

seq1  GGATAAGCAAAACCAAACAACAACAAAAACCTAAGAAGTGCCAGGCAGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGCAAAACCAAACAACAACAAAAACCTAAGAAGTGCCAGGCAGTG  799

seq1  GTACCTTTAATCCCAGGAC-TTGGGAGACAGAGACAGGTGGATTTCTGAA  844
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTACCTTTAATCCCAGGACATTGGGAGACAGAGACAGGTGGATTTCTGAA  849

seq1  TTCC  848
      ||||
seq2  TTCC  853

seq1: chr9_118771359_118772379
seq2: B6Ng01-071G18.g_68_1082

seq1  GAATTCTTCCCTCTTTAGGAGGACACGCCCACAGACACCTCCAGGAGCTC  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTCATTAGGAGGACACGCCCACAGACACCTCCAGGAGCTC  50

seq1  TCTGCTGTCTTTAAATGGTGGGTCATTGACACCCAGAAGCTGTGTTCTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTCTTTAAATGGTGGGTCATTGACACCCAGAAGCTGTGTTCTCG  100

seq1  GCCTTTCAAAGCGTGGGTCACATAAAGCTAGGTGCATCACAGCTGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCAAAGCGTGGGTCACATAAAGCTAGGTGCATCACAGCTGAGGAC  150

seq1  TCACCGGGACTGTTATTTCCATTTCCGGCCTTGTATTAGGCAGCCCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGGGACTGTTATTTCCATTTCCGGCCTTGTATTAGGCAGCCCCACC  200

seq1  CCTGCTGGGCACGCAGAACCAATCAGGAGTGACCCAGAGCGTCTGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGGCACGCAGAACCAATCAGGAGTGACCCAGAGCGTCTGCTTCT  250

seq1  CTGTGGGTCGGAAGCACCACAGGCTTGAAGTGGACGCTGAACATGCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTCGGAAGCACCACAGGCTTGAAGTGGACGCTGAACATGCAACC  300

seq1  CTTCCTCTGCTTTAGGAAAATCACGTCATCTGACCATCCATCAGACAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGCTTTAGGAAAATCACGTCATCTGACCATCCATCAGACAGTA  350

seq1  CCGAGAGACACCTGGTAGCCATTCGCAGCCATGTAACTTAATACAAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGACACCTGGTAGCCATTCGCAGCCATGTAACTTAATACAAGATA  400

seq1  TTAAAGTGGGAGGCGACCAGGAATGGAAATGTAGTTCACATTTCGCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGGGAGGCGACCAGGAATGGAAATGTAGTTCACATTTCGCTGAA  450

seq1  TGGAACAGAATGGAATTGGCTCATTTATGTTAGGACAGGTACGGTTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGAATGGAATTGGCTCATTTATGTTAGGACAGGTACGGTTAACC  500

seq1  AAGTGGTATCAGGTCTCAGGCATTTTAATGAGTCCCGAAATGAACTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTATCAGGTCTCAGGCATTTTAATGAGTCCCGAAATGAACTTCCC  550

seq1  CACAACTGCTGTGGAACACAGCGAGCAAGCGCCCTACGGTGGAATGGGGA  600
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACAACTGCTGTTGAACACAGCGAGCAAGCGCCCTACGGTGGAATGGGGA  600

seq1  TCGCCCTGTCTTCTGACCGCTCCACTCCCAGAGTAGGTAGTTGGTAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCTGTCTTCTGACCGCTCCACTCCCAGAGTAGGTAGTTGGTAATTG  650

seq1  AATTAGCAGAGCTGGCATTCACAACATTCTC-TTGGTATCCCATCTCAAA  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATTAGCAGAGCTGGCATTCACAACATTCTCTTTGGTATCCCATCTCAAA  700

seq1  GGGCGTGTGAATTCAGAGAA-TTCAGAAGGGCCCAGCAGCTAAGTCTCAG  748
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGCGTGTGAATTCAGAGAATTTCAGAAGGGCCCAGCAGCTAAGTCTCAG  750

seq1  GCCCAGTCATGTTTACCCACTTGCCGTCAGCTGTGCTTAGGTAACGTGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTCATGTTTACCCACTTGCCGTCAGCTGTGCTTAGGTAACGTGAT  800

seq1  ACATAAAAGTGGCCCAGGGAAATGACAGGG-AGCAGAATGTCGGCTGACA  847
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  ACATAAAAGTGGCCCAGGGAAATGACAGGGTAGCA-AATGTCGGCTGACA  849

seq1  GGGAAACAGGAGTTAACAGGAAACACA-TGGTCTTGACACAAATGAACCT  896
      ||||||||||| |||||| |||||||| ||||||||||||||||||| ||
seq2  GGGAAACAGGA-TTAACA-GAAACACATTGGTCTTGACACAAATGAA-CT  896

seq1  GCGCTGCTTCACCCGTCAGCTCTGGGCTCGTTTCAAGTCAACTTCCCCCA  946
      ||||||| ||| ||||||||||||||||||||||||||| |||| |||||
seq2  GCGCTGC-TCA-CCGTCAGCTCTGGGCTCGTTTCAAGTC-ACTT-CCCCA  942

seq1  AGGGCTGCATT-GAGGGAGACTCCAAGCAGGGCTCCTGAGTGGTGCAGAG  995
      ||||||||||| |||||| ||| ||| || ||  ||||| ||||||| ||
seq2  AGGGCTGCATTGGAGGGAAACT-CAATCAAGGTCCCTGAATGGTGCA-AG  990

seq1  TTAGTTCAAGTTTCCGCTTACCTGTC  1021
      || ||| |||||||||||||| ||||
seq2  TT-GTTTAAGTTTCCGCTTACTTGTC  1015