BAC Information

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BAC

Clone NameB6Ng01-071H06
Chromosome9 (Build37)
Map Location 114,654,801 - 114,738,474
singlet/doubletdoublet
Overlap geneCmtm6, Cmtm7, Cmtm8
Upstream geneClasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1
Downstream geneGpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071H06.bB6Ng01-071H06.g
ACCDH889150DH889151
length1,094894
definitionDH889150|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H06, 5' end.DH889151|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,654,801 - 114,655,902)(114,737,577 - 114,738,474)
sequence
gaattcctttcctaagtttccagaggaggggccatcctgcagtgagtcca
tggcttggagtcaggcagaggagctgcagccagggacttctaggagcttt
ggttctagaggagtagggaggctagatctctcgtgcacctgacactgctg
ctggtcggcaactctgcttctggccctagcactgcccagcagaagagctg
gcatctgtgccctgtgggacgcacagaggcagctgttattctgggaactt
tgctttgtcatttcctcttaggatagcttttaagttctgttaaagagtgt
taagtgtggggttggagggaaggctcagcaagtgggacccgtgctgctct
tccagaggacccacatcaaatggctctgtctacttccagggatcctgtag
tctctttagacctccaaaaggacccatatacccgtgtcattcgcttccac
agactaactaagtaaaactaaacaaaaccttccagaggacccacatcaga
tggctctgtctacttccagggatcctgtagtctctttagacctccaaaag
gacccatatacccgtgtcattcgcttccacagactaactaagtaaaacta
aacaaaacacataagtaaaactaaagcaagtctttttttaaaagtagtta
taaggtgtaattggtcggtcgtctttcctggatgtgaactctcaggctga
atagaacacaagttgaaacccacacttcctcagatctctccccctctctt
ccttaggtgtttggcttcttggcaagctccatgttcctactggacttcgt
tgtcatgctgtgtgagaagctgcgggagagcccgctgagaaagcccgaga
acacgcaaaggtggaagccctcaccgaaccactgaacgctaaagacacag
agtcgcgggtgtggaccaaagagaggctccctctggtgtgacatgtgtcg
tgtgtgcaccttttggagagaaggcagggacaggagagcacctttacagc
cctgggctgggtgcagtgctgggctgggtggcaccccagcagaagctcag
agggtttgtaatatgctagtaactgtccgagtggaagaggattg
gaattcactctgtaatccaaactgacctcaaactctcagagatctccctg
cctctgcctccccagtgcaccaccatacctggcagatgagtttatttctt
attagcgttaaccaagtacaggaggacctggtttgctctcgtggctgttt
cttctgctggaggtagaagactcccaaacctcagtcatctgttgttcttg
gatgtggaggaaactctccctatgttcactggagcggaggtgaaacatgc
aaagactgtggcaactcctgctggagacaccctcctcgcgtctcacggag
accactgggaggcctaaaggaaagcccttgtgatgaacacagtgacaacc
agaagaagtgggaggggtctaaaccaggcctataattatgaccccaggtg
gagtcaagtcttgattcagtggcctcagctgtttctgtgggggagggggg
ctcatcttcctgctaccttcctgccaccccgactttgcaaggggaaaccc
cttgctcctgaatttaccagtcagactctagctatttcctgcaaccttat
catggcaggatgctgggtccagtttgactttaagctctgttttccctgga
actcttctggtggccacccttgaaaatagttcccttgggggctggagagc
aagtgtttagactacacagagcaagtgggttcttggctatgacgtaccac
cgtgggttctagagatatagaacgcaaatggtgcctcatatcatctgtca
ctcccgctcctgaggatctagcacctcttctggtctgtcaagggcattag
gcgcgcaagtggtgcacaaataaattgtgcagtcaaacacccatacccct
taactctgttgctgagtgtgtgtgcattgtgtgcatgtgtgcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_114654801_114655902
seq2: B6Ng01-071H06.b_40_1133

seq1  GAATTCCTTTCCTAAGTTTCCAGAGGAGGGGCCATCCTGCAGTGAGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCTAAGTTTCCAGAGGAGGGGCCATCCTGCAGTGAGTCCA  50

seq1  TGGCTTGGAGTCAGGCAGAGGAGCTGCAGCCAGGGACTTCTAGGAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGGAGTCAGGCAGAGGAGCTGCAGCCAGGGACTTCTAGGAGCTTT  100

seq1  GGTTCTAGAGGAGTAGGGAGGCTAGATCTCTCGTGCACCTGACACTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGAGGAGTAGGGAGGCTAGATCTCTCGTGCACCTGACACTGCTG  150

seq1  CTGGTCGGCAACTCTGCTTCTGGCCCTAGCACTGCCCAGCAGAAGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCGGCAACTCTGCTTCTGGCCCTAGCACTGCCCAGCAGAAGAGCTG  200

seq1  GCATCTGTGCCCTGTGGGACGCACAGAGGCAGCTGTTATTCTGGGAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTGCCCTGTGGGACGCACAGAGGCAGCTGTTATTCTGGGAACTT  250

seq1  TGCTTTGTCATTTCCTCTTAGGATAGCTTTTAAGTTCTGTTAAAGAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTCATTTCCTCTTAGGATAGCTTTTAAGTTCTGTTAAAGAGTGT  300

seq1  TAAGTGTGGGGTTGGAGGGAAGGCTCAGCAAGTGGGACCCGTGCTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGGGGTTGGAGGGAAGGCTCAGCAAGTGGGACCCGTGCTGCTCT  350

seq1  TCCAGAGGACCCACATCAGATGGCTCTGTCTACTTCCAGGGATCCTGTAG  400
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCAGAGGACCCACATCAAATGGCTCTGTCTACTTCCAGGGATCCTGTAG  400

seq1  TCTCTTTAGACCTCCAAAAGGACCCATATACCCGTGTCATTCGCTTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAGACCTCCAAAAGGACCCATATACCCGTGTCATTCGCTTCCAC  450

seq1  AGACTAACTAAGTAAAACTAAACAAAACCTTCCAGAGGACCCACATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAACTAAGTAAAACTAAACAAAACCTTCCAGAGGACCCACATCAGA  500

seq1  TGGCTCTGTCTACTTCCAGGGATCCTGTAGTCTCTTTAGACCTCCAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGTCTACTTCCAGGGATCCTGTAGTCTCTTTAGACCTCCAAAAG  550

seq1  GACCCATATACCCGTGTCATTCGCTTCCACAGACTAACTAAGTAAAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATATACCCGTGTCATTCGCTTCCACAGACTAACTAAGTAAAACTA  600

seq1  AACAAAACACATAAGTAAAACTAAAGCAAGTCTTTTTTTAAAAGTAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACACATAAGTAAAACTAAAGCAAGTCTTTTTTTAAAAGTAGTTA  650

seq1  TAAGGTGTAATTGGTCGGTCGTCTTTCCTGGATGTGAACTCTCAGGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTAATTGGTCGGTCGTCTTTCCTGGATGTGAACTCTCAGGCTGA  700

seq1  ATAGAACACAAGTTGAAGCCCACACTTCCTCAGATCTCTCCCCCTCTCTT  750
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAGAACACAAGTTGAAACCCACACTTCCTCAGATCTCTCCCCCTCTCTT  750

seq1  CCTTAGGTGTTTGGCTTCTTGGCAAGCTCCATGTTCCTACTGGACTTCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGTGTTTGGCTTCTTGGCAAGCTCCATGTTCCTACTGGACTTCGT  800

seq1  TGTCATGCTGTGTGAGAAGCTGCGGGAGAGCCCGCTGAGAAAGCCCGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGCTGTGTGAGAAGCTGCGGGAGAGCCCGCTGAGAAAGCCCGAGA  850

seq1  ACAACGCAAAGGTGGAAGCCCTCACCGAACCACTGAACGCTTAAAGACAC  900
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AC-ACGCAAAGGTGGAAGCCCTCACCGAACCACTGAACGC-TAAAGACAC  898

seq1  AGAGCCG-GGGTGTGGACCCAAAGAGAGGCTCCCTCT-GTGTGACCTGTG  948
      |||| || ||||||||| ||||||||||||||||||| ||||||| ||||
seq2  AGAGTCGCGGGTGTGGA-CCAAAGAGAGGCTCCCTCTGGTGTGACATGTG  947

seq1  TCGTGTGTGCACCTTTTGGAGAGAAGGGAAGGGACAGGAGAGCAGCTTTA  998
      ||||||||||||||||||||||||| || ||||||||||||||| |||||
seq2  TCGTGTGTGCACCTTTTGGAGAGAA-GGCAGGGACAGGAGAGCACCTTTA  996

seq1  CAGCGCTGGGCTGGGTGGCAGTGCTGGGCTGGGTGGCAGCCCCAGCAGGA  1048
      |||| ||||||||||| ||||||||||||||||||||| |||||||| ||
seq2  CAGCCCTGGGCTGGGT-GCAGTGCTGGGCTGGGTGGCA-CCCCAGCA-GA  1043

seq1  AGCTCAGAGGGTTTGTAATAATGCTTGGAACCTGTCGCGAGTGGAGGAGG  1098
      ||||||||||||||||||| ||||| | || ||||| |||||||| ||||
seq2  AGCTCAGAGGGTTTGTAAT-ATGCTAGTAA-CTGTC-CGAGTGGAAGAGG  1090

seq1  ATTG  1102
      ||||
seq2  ATTG  1094

seq1: chr9_114737577_114738474
seq2: B6Ng01-071H06.g_67_960 (reverse)

seq1  ACGCACACATGCACAC-ATGCACACACACTCATGCATACAGAGTTAAGGG  49
      |||||||||||||||| ||||||||||||||| ||| |||||||||||||
seq2  ACGCACACATGCACACAATGCACACACACTCA-GCA-ACAGAGTTAAGGG  48

seq1  GTATGGGTGTTTTGACTGCACAATTTATTTGTGCACCACTTGCGTGCCTA  99
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  GTATGGGTG-TTTGACTGCACAATTTATTTGTGCACCACTTGCGCGCCTA  97

seq1  ATGCCCTTGACAGACCAGAAGAGGGTGCTAGATCCTCAGGAGCTGGAGTT  149
      |||||||||||||||||||||| |||||||||||||||||||| ||||| 
seq2  ATGCCCTTGACAGACCAGAAGA-GGTGCTAGATCCTCAGGAGCGGGAGTG  146

seq1  ACAGATGGCTATGAGGCACCATGTGGGTTCTATAACCCTAGAACCCACCG  199
      |||||| | ||||||||||||| || |||||||| | ||||||||||| |
seq2  ACAGAT-GATATGAGGCACCATTTGCGTTCTATATCTCTAGAACCCACGG  195

seq1  TGGTACCTCATAGCCAAGAACCCACTTGCTCTGTGTAGTCTAAACACTTG  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACGTCATAGCCAAGAACCCACTTGCTCTGTGTAGTCTAAACACTTG  245

seq1  CTCTCCAGCCCCCAAGGGAACTATTTTCAAGGGTGGCCACCAGAAGAGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCCCAAGGGAACTATTTTCAAGGGTGGCCACCAGAAGAGTT  295

seq1  CCAGGGAAAACAGAGCTTAAAGTCAAACTGGACCCAGCATCCTGCCATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAAAACAGAGCTTAAAGTCAAACTGGACCCAGCATCCTGCCATGA  345

seq1  TAAGGTTGCAGGAAATAGCTAGAGTCTGACTGGTAAATTCAGGAGCAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTGCAGGAAATAGCTAGAGTCTGACTGGTAAATTCAGGAGCAAGG  395

seq1  GGTTTCCCCTTGCAAAGTCGGGGTGGCAGGAAGGTAGCAGGAAGATGAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCCCTTGCAAAGTCGGGGTGGCAGGAAGGTAGCAGGAAGATGAGC  445

seq1  CCCCCTCCCCCACAGAAACAGCTGAGGCCACTGAATCAAGACTTGACTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCCACAGAAACAGCTGAGGCCACTGAATCAAGACTTGACTCC  495

seq1  ACCTGGGGTCATAATTATAGGCCTGGTTTAGACCCCTCCCACTTCTTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGGTCATAATTATAGGCCTGGTTTAGACCCCTCCCACTTCTTCTG  545

seq1  GTTGTCACTGTGTTCATCACAAGGGCTTTCCTTTAGGCCTCCCAGTGGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCACTGTGTTCATCACAAGGGCTTTCCTTTAGGCCTCCCAGTGGTC  595

seq1  TCCGTGAGACGCGAGGAGGGTGTCTCCAGCAGGAGTTGCCACAGTCTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGAGACGCGAGGAGGGTGTCTCCAGCAGGAGTTGCCACAGTCTTTG  645

seq1  CATGTTTCACCTCCGCTCCAGTGAACATAGGGAGAGTTTCCTCCACATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCACCTCCGCTCCAGTGAACATAGGGAGAGTTTCCTCCACATCC  695

seq1  AAGAACAACAGATGACTGAGGTTTGGGAGTCTTCTACCTCCAGCAGAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAACAGATGACTGAGGTTTGGGAGTCTTCTACCTCCAGCAGAAGA  745

seq1  AACAGCCACGAGAGCAAACCAGGTCCTCCTGTACTTGGTTAACGCTAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCACGAGAGCAAACCAGGTCCTCCTGTACTTGGTTAACGCTAATA  795

seq1  AGAAATAAACTCATCTGCCAGGTATGGTGGTGCACTGGGGAGGCAGAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAACTCATCTGCCAGGTATGGTGGTGCACTGGGGAGGCAGAGGC  845

seq1  AGGGAGATCTCTGAGAGTTTGAGGTCAGTTTGGACTACAGAGTGAATTC  898
      |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGGAGATCTCTGAGAGTTTGAGGTCAGTTTGGATTACAGAGTGAATTC  894