BAC Information

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BAC

Clone NameB6Ng01-072H12
Chromosome9 (Build37)
Map Location 100,061,314 - 100,196,607
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik
Downstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072H12.bB6Ng01-072H12.g
ACCDH889880DH889881
length877998
definitionDH889880|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H12, 5' end.DH889881|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,195,728 - 100,196,607)(100,061,314 - 100,062,313)
sequence
gaattcccttctctgaaagtacagggattgtgcagccttgtcacaacttg
cagataggtactcagaatgcccgtcatatgaaggtagcaggacctggcac
tgttgcctcacaggctggtgacaaaatatttgttctaccagtagctgtgg
tcttacacttccagaggtagcccgctttcaagacacaaatggaggcccag
agaagtctatgggtttcctttctctttagtagaacttggccttttctgtt
ctgccaggcacctgagatgtctcccttcgtggatgagagtttagcttccc
taggtgtccctttcagattttcttcttggggtcttggaagagaatgagag
agccctgtgtacctcagaccacacggggggagggggggagggacacggac
tttcttactcagggcagtgggagaacactagagaaggggctagaatgggc
tagccattggctattttaggacagtgagactgcttatcagcctgactctg
tttttttggataaagaacttgagaatctgccttttctcttctatgggaac
aactgaaacaccatgaactttggaaatgctggcatctacaggctgattct
gggtggatttagagaacttttctcggcaggaggtgaaacttactttcctt
cagagttctgttgagtcctggcaaagtaggtggcctggtgggcgcaaaga
cagagggtcccaaatgctcatgaactggatgtagaatctaggaggcacac
accatattatgggagtcagttggtagataaacttacctccatcattttgt
accatatccactgtgaagtgactgtgactacatggattatcttctgaaag
ttgtctcttctttctggcgcatacttc
gaattcattgtcttccacgattctccctttcaaagagagcacggtcctgc
tgaactttgagtttgtggacctctggcttccagaaatacaatggaataaa
tacattttctcttgttacagcaaactaatagaatgtattaaattccagga
agtcaccatgaatcgggaaagaaagcctgtttgtgtaaatacatggaaat
aaactgaaaaatgaaggcagaggacatacaacctactaccacctctaaat
gtctgtcatattccactagcaatagatccagaaacataagcatgagacaa
ataatgaactatgcaaaaactgctatgacaattcctgttattatttaaca
caatcccacaatccaccactgagtaagtgcttgtggtaagtccagcccta
tgcttgatgcattcaatatattatctagttattcagcaactctgaaagaa
tcccaccacctggcacgccatgtttctaacaaagtagaaacaaatgcttc
tggccaatccattctgtgactgttttggttagaatagcatggaggaggag
gagccatcgtatatacagtcaccaaacccagacactattgtggataccaa
caagtgcttgctgacaggagcctgatatagctgtctcctgagaggctctg
ccagtgcctgacaaatacaggggtggatgctctcagccaaccattagact
gagcacagggtccccaatggaagagttagagaaagtacccaagaagctga
gtttgcagccctataggtggaacaaaaatatgaactaaccagtactccca
gagttcccagggactaaacaaccaacaaaagagtacacatggagggaccc
atggctcccgtcatatatgcagcagaggatgggcttgttggtcatcaatg
tgaggagaggcccttggtcttgtgaaggcgctatgccccagtgtagggaa
atgccaggacagggaagctaaaatggtgagcagggaaggggggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100195728_100196607
seq2: B6Ng01-072H12.b_46_922 (reverse)

seq1  GAAGTATGCGCCAGAAAGAAGAGACAAACTTTCATGAAGATAATCCATGT  50
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  GAAGTATGCGCCAGAAAGAAGAGAC-AACTTTCA-GAAGATAATCCATGT  48

seq1  GGTCACAGTCACTTCACAGTGGATATGGTACAAAATGATGGAGGTAAGTT  100
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTCACAGTCACTTCACAGTGGATATGGTACAAAATGATGGAGGTAAG-T  97

seq1  TTATCTACCAACTGACTCCCATAATATGGTGTGTGCCTCCTAGATTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTACCAACTGACTCCCATAATATGGTGTGTGCCTCCTAGATTCTAC  147

seq1  ATCCAGTTCATGAGCATTTGGGACCCTCTGTCTTTGCGCCCACCAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTTCATGAGCATTTGGGACCCTCTGTCTTTGCGCCCACCAGGCCA  197

seq1  CCTACTTTGCCAGGACTCAACAGAACTCTGAAGGAAAGTAAGTTTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTGCCAGGACTCAACAGAACTCTGAAGGAAAGTAAGTTTCACCT  247

seq1  CCTGCCGAGAAAAGTTCTCTAAATCCACCCAGAATCAGCCTGTAGATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCGAGAAAAGTTCTCTAAATCCACCCAGAATCAGCCTGTAGATGCC  297

seq1  AGCATTTCCAAAGTTCATGGTGTTTCAGTTGTTCCCATAGAAGAGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCCAAAGTTCATGGTGTTTCAGTTGTTCCCATAGAAGAGAAAAG  347

seq1  GCAGATTCTCAAGTTCTTTATCCAAAAAAACAGAGTCAGGCTGATAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTCTCAAGTTCTTTATCCAAAAAAACAGAGTCAGGCTGATAAGCA  397

seq1  GTCTCACTGTCCTAAAATAGCCAATGGCTAGCCCATTCTAGCCCCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTGTCCTAAAATAGCCAATGGCTAGCCCATTCTAGCCCCTTCTC  447

seq1  TAGTGTTCTCCCACTGCCCTGAGTAAGAAAGTCCGTGTCCCTCCCCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCTCCCACTGCCCTGAGTAAGAAAGTCCGTGTCCCTCCCCCCCT  497

seq1  CCCCCCGTGTGGTCTGAGGTACACAGGGCTCTCTCATTCTCTTCCAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGTGTGGTCTGAGGTACACAGGGCTCTCTCATTCTCTTCCAAGAC  547

seq1  CCCAAGAAGAAAATCTGAAAGGGACACCTAGGGAAGCTAAACTCTCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAGAAAATCTGAAAGGGACACCTAGGGAAGCTAAACTCTCATCC  597

seq1  ACGAAGGGAGACATCTCAGGTGCCTGGCAGAACAGAAAAGGCCAAGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGGGAGACATCTCAGGTGCCTGGCAGAACAGAAAAGGCCAAGTTCT  647

seq1  ACTAAAGAGAAAGGAAACCCATAGACTTCTCTGGGCCTCCATTTGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAGAAAGGAAACCCATAGACTTCTCTGGGCCTCCATTTGTGTCT  697

seq1  TGAAAGCGGGCTACCTCTGGAAGTGTAAGACCACAGCTACTGGTAGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCGGGCTACCTCTGGAAGTGTAAGACCACAGCTACTGGTAGAACA  747

seq1  AATATTTTGTCACCAGCCTGTGAGGCAACAGTGCCAGGTCCTGCTACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTGTCACCAGCCTGTGAGGCAACAGTGCCAGGTCCTGCTACCTT  797

seq1  CATATGACGGGCATTCTGAGTACCTATCTGCAAGTTGTGACAAGGCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGACGGGCATTCTGAGTACCTATCTGCAAGTTGTGACAAGGCTGCA  847

seq1  CAATCCCTGTACTTTCAGAGAAGGGAATTC  880
      ||||||||||||||||||||||||||||||
seq2  CAATCCCTGTACTTTCAGAGAAGGGAATTC  877

seq1: chr9_100061314_100062313
seq2: B6Ng01-072H12.g_69_1066

seq1  GAATTCATTGTCTTCCACGATTCTCCCTTTCAAAGAGAGCACGGTCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTCTTCCACGATTCTCCCTTTCAAAGAGAGCACGGTCCTGC  50

seq1  TGAACTTTGAGTTTGTGGACCTCTGGCTTCCAGAAATACAATGGAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGAGTTTGTGGACCTCTGGCTTCCAGAAATACAATGGAATAAA  100

seq1  TACATTTTCTCTTGTTACAGCAAACTAATAGAATGTATTAAATTCCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTCTCTTGTTACAGCAAACTAATAGAATGTATTAAATTCCAGGA  150

seq1  AGTCACCATGAATCGGGAAAGAAAGCCTGTTTGTGTAAATACATGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCATGAATCGGGAAAGAAAGCCTGTTTGTGTAAATACATGGAAAT  200

seq1  AAACTGAAAAATGAAGGCAGAGGACATACAACCTACTACCACCTCTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAAAATGAAGGCAGAGGACATACAACCTACTACCACCTCTAAAT  250

seq1  GTCTGTCATATTCCACTAGCAATAGATCCAGAAACATAAGCATGAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCATATTCCACTAGCAATAGATCCAGAAACATAAGCATGAGACAA  300

seq1  ATAATGAACTATGCAAAAACTGCTATGACAATTCCTGTTATTATTTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAACTATGCAAAAACTGCTATGACAATTCCTGTTATTATTTAACA  350

seq1  CAATCCCACAATCCACCACTGAGTAAGTGCTTGTGGTAAGTCCAGCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCACAATCCACCACTGAGTAAGTGCTTGTGGTAAGTCCAGCCCTA  400

seq1  TGCTTGATGCATTCAATATATTATCTAGTTATTCAGCAACTCTGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGATGCATTCAATATATTATCTAGTTATTCAGCAACTCTGAAAGAA  450

seq1  TCCCACCACCTGGCACGCCATGTTTCTAACAAAGTAGAAACAAATGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCACCTGGCACGCCATGTTTCTAACAAAGTAGAAACAAATGCTTC  500

seq1  TGGCCAATCCATTCTGTGACTGTTTTGGTTAGAATAGCATGGAGGAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAATCCATTCTGTGACTGTTTTGGTTAGAATAGCATGGAGGAGGAG  550

seq1  GAGCCATCGTATATACAGTCACCAAACCCAGACACTATTGTGGATACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCGTATATACAGTCACCAAACCCAGACACTATTGTGGATACCAA  600

seq1  CAAGTGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTG  650

seq1  CCAGTGCCTGACAAATACAGGGGTGGATGCTCTCAGCCAACCATTAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCTGACAAATACAGGGGTGGATGCTCTCAGCCAACCATTAGACT  700

seq1  GAGCACAGGGTCCCCAATGGAAGAGTTAGAGAAAGTACCCAAGAAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGGGTCCCCAATGGAAGAGTTAGAGAAAGTACCCAAGAAGCTGA  750

seq1  GTTTGCAGCCCTATAGGTGGAACAAAAATATGAACTAACCAGTACTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGCCCTATAGGTGGAACAAAAATATGAACTAACCAGTACTCCCA  800

seq1  GAGTTCCCAGGGACTAAACAACCAACAAAAGAGTACACATGGAGGGACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCCAGGGACTAAACAACCAACAAAAGAGTACACATGGAGGGACCC  850

seq1  ATGGCTCCCGTCATATATGCAGCAGAGGATGGGCTTGTTGGTCATCAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCCCGTCATATATGCAGCAGAGGATGGGCTTGTTGGTCATCAATG  900

seq1  TGAGGAGAGGCCCTTGGTCTTGTGAAGGCGCTATGCCCCAGTGTAGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAGGCCCTTGGTCTTGTGAAGGCGCTATGCCCCAGTGTAGGGAA  950

seq1  ATGCCAGGACAGGGAAGCTAAAATGGTGAGCAGGGGAAGGGGGGAGGAGG  1000
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  ATGCCAGGACAGGGAAGCTAAAATGGTGAGCA-GGGAAGGGGGG-GGAGG  998