BAC Information

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BAC

Clone NameB6Ng01-072N12
Chromosome9 (Build37)
Map Location 87,503,350 - 87,644,277
singlet/doubletdoublet
Overlap geneTbx18
Upstream geneMod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
Downstream geneLOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072N12.bB6Ng01-072N12.g
ACCDH890140DH890141
length1,134258
definitionDH890140|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N12, 5' end.DH890141|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,503,350 - 87,504,501)(87,644,021 - 87,644,277)
sequence
gaattcctgattacacaggaatgtgacaaggtttgttttacatggttatc
gaaatctctgcatatttgaagagatggaacactgggcatgctacacacag
gaagagtgccgggtgatctacagaccaagaattagcaagagcgattgaat
aacccgctgcttagggaggaaaaaaaaatgagatgctgtaagaagatgct
aaaataggagtaagcaggcagacagccacacccaaatccattccaagtgg
tttttttctactcttttggctgcgagggtttacaccatgtttatttgatg
agtttttcgttttgtttgtctgttttaaccagattaagtcacatggcagg
ttcagatatgtagctacttttcaaatcttgacagattggcaccgggcaag
gcagagagcacatttcagtatatcagaaataattgatgcttctttttaat
ttttaaaaattattttattgtataatacacacacacatatttcccataca
ttcatgggaatgtaggtatatatatcccaaagtgtgtgtgtgtaagtcag
agaacaaccctggtgtcctcttctcttctccttgtttggatagggtctct
ttattacttactgctgcatagtccaggctagctgaccaagtcagctttgg
gagattctcttcttgcctctgtctcccatctcaccataggcatgctggga
ttaaaggcaccgagttttgcatgtgttcagaggattcactgccagctcat
tcctgcccagcaagtgttttacccacacccccagaaccatttatattatt
tttattgacaaataatgactgtatgagtcacatacatatgggatgccttg
gaatggcttgacacatgttcccatcatggatgaataaatgatgctaatca
acaagttcaccataccacaattattccagccttgcccccttacactggag
aaaaaattttgtttggaataacaatatgttaacaaaaggaataagaatat
gaggcccttgttttcagagtttgaaatggaaagctatagaaagactaaat
ctacgtgtgggttgtgtgtgtgcgcgcgccccgcagctgtatatttttta
tgaatataattataactagtccaattgtcgaacc
ctaaaatgtctaagttcctacagccttgagcattatgtatgtacaaggcc
ggcttccaagttcctatctccttcccagaagactcagttccttactttgc
tattaactcagcctgtgtttggtacaaagaagcagacacagtcaagtagt
gggtggggatgaaggggtggaagtgcagtgttatggtttgtataccctct
gcctagggagtgacactattagaaggtgtggccttgttggagttttgtgg
gtcactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_87503350_87504501
seq2: B6Ng01-072N12.b_42_1175

seq1  GAATTCCTGATTACACAGGAATGTGACAAGGTTTGTTTTACATGGTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTACACAGGAATGTGACAAGGTTTGTTTTACATGGTTATC  50

seq1  GAAATCTCTGCATATTTGAAGAGATGGAACACTGGGCATGCTACACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCTGCATATTTGAAGAGATGGAACACTGGGCATGCTACACACAG  100

seq1  GAAGAGTGCCGGGTGATCTACAGACCAAGAATTAGCAAGAGCGATTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGCCGGGTGATCTACAGACCAAGAATTAGCAAGAGCGATTGAAT  150

seq1  AACCCGCTGCTTAGGGAGGAAAAAAAAATGAGATGCTGTAAGAAGATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGCTGCTTAGGGAGGAAAAAAAAATGAGATGCTGTAAGAAGATGCT  200

seq1  AAAATAGGAGTAAGCAGGCAGACAGCCACACCCAAATCCATTCCAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGAGTAAGCAGGCAGACAGCCACACCCAAATCCATTCCAAGTGG  250

seq1  TTTTTTTCTACTCTTTTGGCTGCGAGGGTTTACACCATGTTTATTTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTACTCTTTTGGCTGCGAGGGTTTACACCATGTTTATTTGATG  300

seq1  AGTTTTTCGTTTTGTTTGTCTGTTTTAACCAGATTAAGTCACATGGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCGTTTTGTTTGTCTGTTTTAACCAGATTAAGTCACATGGCAGG  350

seq1  TTCAGATATGTAGCTACTTTTCAAATCTTGACAGATTGGCACCGGGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATATGTAGCTACTTTTCAAATCTTGACAGATTGGCACCGGGCAAG  400

seq1  GCAGAGAGCACATTTCAGTATATCAGAAATAATTGATGCTTCTTTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGCACATTTCAGTATATCAGAAATAATTGATGCTTCTTTTTAAT  450

seq1  TTTTAAAAATTATTTTATTGTATAATACACACACACATATTTCCCATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATTATTTTATTGTATAATACACACACACATATTTCCCATACA  500

seq1  TTCATGGGAATGTAGGTATATATATCCCAAAGTGTGTGTGTGTAAGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGAATGTAGGTATATATATCCCAAAGTGTGTGTGTGTAAGTCAG  550

seq1  AGAACAACCCTGGTGTCCTCTTCTCTTCTCCTTGTTTGGATAGGGTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACCCTGGTGTCCTCTTCTCTTCTCCTTGTTTGGATAGGGTCTCT  600

seq1  TTATTACTTACTGCTGCATAGTCCAGGCTAGCTGACCAAGTCAGCTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTTACTGCTGCATAGTCCAGGCTAGCTGACCAAGTCAGCTTTGG  650

seq1  GAGATTCTCTTCTTGCCTCTGTCTCCCATCTCACCATAGGCATGCTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTCTTCTTGCCTCTGTCTCCCATCTCACCATAGGCATGCTGGGA  700

seq1  TTAAAGGCACCGAGTTTTGCATGTGTTCAGAGGATTCACTGCCAGCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCACCGAGTTTTGCATGTGTTCAGAGGATTCACTGCCAGCTCAT  750

seq1  TCCTGCCCAGCAAGTGTTTTACCCACACCCCCAGAACCATTTATATTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCAGCAAGTGTTTTACCCACACCCCCAGAACCATTTATATTATT  800

seq1  TTTATTGACAAATAATGACTGTATGAGTCACATACATATGGGATGCCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGACAAATAATGACTGTATGAGTCACATACATATGGGATGCCTTG  850

seq1  GAATGGCTTGACACATGTTCCCATCATGGATGAATAAATGATGCTAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTTGACACATGTTCCCATCATGGATGAATAAATGATGCTAATCA  900

seq1  ACAAGTTCACCATACCACAATTATTCCAGCCTTGCCCCCTTACAACTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAAGTTCACCATACCACAATTATTCCAGCCTTGCCCCCTTAC-ACTGGA  949

seq1  GAAATAA-TTTGTTTGGAATAACAATATGTTAAAAAAAAAAGAAATAAGA  999
      |||| || |||||||||||||||||||||||   || ||||| |||||| 
seq2  GAAAAAATTTTGTTTGGAATAACAATATGTT---AACAAAAGGAATAAG-  995

seq1  AATATGA-GCCCTTG-TCTCAGAGTTTGAAAATGGAAAGCTATAGAAAGA  1047
      ||||||| ||||||| | |||||||||| |||||||||||||||||||||
seq2  AATATGAGGCCCTTGTTTTCAGAGTTTG-AAATGGAAAGCTATAGAAAGA  1044

seq1  ACTTAAATCCCACGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGCC  1097
         ||||| | ||||||| ||   |||||||||||||||||   | ||| 
seq2  --CTAAAT-CTACGTGTGGGT---TGTGTGTGTGCGCGCGC---CCCGC-  1084

seq1  ACGCTGTATATTTTTTATGAATAATTAAGTTATAACTAGTTCCAATTGTC  1147
        |||||||||||||||||||||  ||| |||||||||| ||||||||||
seq2  -AGCTGTATATTTTTTATGAATA--TAA-TTATAACTAG-TCCAATTGTC  1129

seq1  AAACC  1152
       ||||
seq2  GAACC  1134

seq1: chr9_87644021_87644277
seq2: B6Ng01-072N12.g_74_331 (reverse)

seq1  ATAGTGACACAC-CAACTCCAACAGGGCCACACCTTCTAATAGTGCCACT  49
      |||||||| |||  |||||||||| |||||||||||||||||||| ||||
seq2  ATAGTGACCCACAAAACTCCAACAAGGCCACACCTTCTAATAGTGTCACT  50

seq1  CCCTAGGCAGAGCGTATACAAACCATAACACTGCACTTCCACCCCTTCAT  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGCAGAGGGTATACAAACCATAACACTGCACTTCCACCCCTTCAT  100

seq1  CCCCACCCACTACTTGACTGTGTCTGCTTCTTTGTACCAAACACAGGCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCACTACTTGACTGTGTCTGCTTCTTTGTACCAAACACAGGCTG  150

seq1  AGTTAATAGCAAAGTAAGGAACTGAGTCTTCTGGGAAGGAGATAGGAACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAGCAAAGTAAGGAACTGAGTCTTCTGGGAAGGAGATAGGAACT  200

seq1  TGGAAGCCGGCCTTGTACATACATAATGCTCAAGGCTGTAGGAACTTAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCGGCCTTGTACATACATAATGCTCAAGGCTGTAGGAACTTAGA  250

seq1  CATTTTAG  257
      ||||||||
seq2  CATTTTAG  258