BAC Information

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BAC

Clone NameB6Ng01-072O11
Chromosome9 (Build37)
Map Location 52,529,259 - 52,685,601
singlet/doubletdoublet
Overlap geneGm1715
Upstream geneArhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072O11.bB6Ng01-072O11.g
ACCDH890186DH890187
length1,0891,072
definitionDH890186|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O11, 5' end.DH890187|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,529,259 - 52,530,350)(52,684,540 - 52,685,601)
sequence
gaattcatgagggtcccagttatggaaacacctttgatatagggatcaga
ggtggtctaacaagaattcctaatgagaagccagatagattgaagaatta
atgatctctttctcaaaatctgctgattgtttacaccctgatataataaa
agtcagatttattgccagtactgaaaagagtcactgatgccaggtctggt
ggcacaggcctttaatctcagcacttgggagacagaagctggaggaactc
tatctagagtttgaggccagtcagtttcaggacagccagaacaacagaga
aaaatcttctatggggggcggagggaggtttcagtgatgattaatagctg
ccacgtcactggaacttataaaatgcctttacatatattgtctagctgac
ttctactttaactcacaagacagataccttgttctagttttgtcttatgt
cactgtgataaaacacagaccaaagcaacttgggggaggaatgggtttaa
tttggcttataggtgacagtttattattgaaggaaattcaaattcctaga
caggaattcaaatcaggagcctagaggcaggaactgaagcataggcagtg
gaggagcactgcttagtggatctctgtggtttgctcagcttgctatctta
tacaattcaggaccacccacccaatggtaggatcagccacagtgaactgg
ggcctccaccccaatcattaatcaagaaatgacacacagtcatgtccatg
ggccagtctgatggaggtaattcctcaactgatgtttcttcttccaaggt
gactctagtttacatcaagttgacaacaattaagccacatagatttttat
ccagtgattaagtgtttgcaaacatcaaacacctaacctaagttttctga
tgacaaactccctcttcttgttatatgtgcataggatctctaatcatcaa
atctgtactttttcattgtcccagtgttttgaaggcatcaatttttcctc
ctttgatttctgcccaacctgcctgataactatgaacatagaggcagatc
ccatcaaaaaatgaattgcactttatcctactggaagtt
gaattctaaacaccacacacacttgcaaaaagtatctgaagctgacaaaa
atcatgcccctgctagagcacatgacaaatcatagtcacctgctgtgaag
cagccccatatcccacacctgggattaaaacaaaaacatattcctataat
atttctgtgtttgcagaaagaaaccaaaattacaaaattctcagtacaga
gagatatgcaggaataaaccccatgtgcaataaaatacaatgaatgttta
attttaaaatatggcatacatatgcaatagactattatctatctttggaa
atgggggaattctaatatggtagcacatggctgcatctgaagggtattga
gctcagtgaaaaatgcccatcagaaagacaaatgctgtatgtttgcatct
ttatgaggtgatggatatagatggtagcatgatggctgctgaggcttgtg
ggaaggaggggacaaggagtatgtgtttaatgggcagaaattcactcaag
taaggtccaaaagctctggaagagcacttgaagactcttaggatgccaaa
ctccattatgtgtcttttactgcactatgtaaaacacgaggacattggtc
atgcatcctcttcatttccacattgtcttatgatggctgtcgatcacctg
tgcatacattatgtattctgtacagtgtgatgctattattctgatcaccg
tttctctgaatcacttccccgtctcagtcttttctcttttctctcagata
tttcaattttacatagggtagatcacttatttttttttctaaatgtaatt
aaaatgattgctctgttaaataaaaattgttctcttcagtataatttcta
tcattttgatttttagttcatataccctttaccctgtataatgtaatttt
tttagctcttttgatgaaaattttgatgatgaattgagtgttctttgata
atttcatatgtgttttggcaatctgctgctctgcccttagcttgcctgtc
tttctacaacacctctatcatccttctacaggcttttccactgggggact
tttcatttaatataatttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52529259_52530350
seq2: B6Ng01-072O11.b_45_1133

seq1  GAATTCATGAGGGTCCCAGTTATGGAAACACCTTTGATATAGGGATCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGGGTCCCAGTTATGGAAACACCTTTGATATAGGGATCAGA  50

seq1  GGTGGTCTAACAAGAATTCCTAATGAGAAGCCAGATAGATTGAAGAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCTAACAAGAATTCCTAATGAGAAGCCAGATAGATTGAAGAATTA  100

seq1  ATGATCTCTTTCTCAAAATCTGCTGATTGTTTACACCCTGATATAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTCTTTCTCAAAATCTGCTGATTGTTTACACCCTGATATAATAAA  150

seq1  AGTCAGATTTATTGCCAGTACTGAAAAGAGTCACTGATGCCAGGTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATTTATTGCCAGTACTGAAAAGAGTCACTGATGCCAGGTCTGGT  200

seq1  GGCACAGGCCTTTAATCTCAGCACTTGGGAGACAGAAGCTGGAGGAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGCCTTTAATCTCAGCACTTGGGAGACAGAAGCTGGAGGAACTC  250

seq1  TATCTAGAGTTTGAGGCCAGTCAGTTTCAGGACAGCCAGAACAACAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAGTTTGAGGCCAGTCAGTTTCAGGACAGCCAGAACAACAGAGA  300

seq1  AAAATCTTCTATGGGGGGCGGAGGGAGGTTTCAGTGATGATTAATAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTCTATGGGGGGCGGAGGGAGGTTTCAGTGATGATTAATAGCTG  350

seq1  CCACGTCACTGGAACTTATAAAATGCCTTTACATATATTGTCTAGCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTCACTGGAACTTATAAAATGCCTTTACATATATTGTCTAGCTGAC  400

seq1  TTCTACTTTAACTCACAAGACAGATACCTTGTTCTAGTTTTGTCTTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTAACTCACAAGACAGATACCTTGTTCTAGTTTTGTCTTATGT  450

seq1  CACTGTGATAAAACACAGACCAAAGCAACTTGGGGGAGGAATGGGTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGATAAAACACAGACCAAAGCAACTTGGGGGAGGAATGGGTTTAA  500

seq1  TTTGGCTTATAGGTGACAGTTTATTATTGAAGGAAATTCAAATTCCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTATAGGTGACAGTTTATTATTGAAGGAAATTCAAATTCCTAGA  550

seq1  CAGGAATTCAAATCAGGAGCCTAGAGGCAGGAACTGAAGCATAGGCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTCAAATCAGGAGCCTAGAGGCAGGAACTGAAGCATAGGCAGTG  600

seq1  GAGGAGCACTGCTTAGTGGATCTCTGTGGTTTGCTCAGCTTGCTATCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCACTGCTTAGTGGATCTCTGTGGTTTGCTCAGCTTGCTATCTTA  650

seq1  TACAATTCAGGACCACCCACCCAATGGTAGGATCAGCCACAGTGAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTCAGGACCACCCACCCAATGGTAGGATCAGCCACAGTGAACTGG  700

seq1  GGCCTCCACCCCAATCATTAATCAAGAAATGACACACAGTCATGTCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCACCCCAATCATTAATCAAGAAATGACACACAGTCATGTCCATG  750

seq1  GGCCAGTCTGATGGAGGTAATTCCTCAACTGATGTTTCTTCTTCCAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTCTGATGGAGGTAATTCCTCAACTGATGTTTCTTCTTCCAAGGT  800

seq1  GACTCTAGTTTACATCAAGTTGACAACAATTAAGCCACATAGATTTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAGTTTACATCAAGTTGACAACAATTAAGCCACATAGATTTTTAT  850

seq1  CCAGTGATTAAGTGTTTGCAAACATCAAACACCTAACCTAAGTTTTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATTAAGTGTTTGCAAACATCAAACACCTAACCTAAGTTTTCTGA  900

seq1  TGACAAACTCCCTCTTCTTGTTATATGTGCATAGGATCTCTAATCATCAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGACAAACTCCCTCTTCTTGTTATATGTGCATAGGATCTCTAATCATC-A  949

seq1  AATCTGTACTTTTCCATTGTCCCAGTGTTTTGAAGGCATCAATTTTCCTT  1000
      ||||||||||||| |||||||||||||||||||||||||||||||| | |
seq2  AATCTGTACTTTTTCATTGTCCCAGTGTTTTGAAGGCATCAATTTTTCCT  999

seq1  CCTTTGATTTTCTGCACAA-CTGCCTGATAAACTATGAACATAGAGTCAG  1049
      ||||||| ||||||| ||| ||||||||| |||||||||||||||| |||
seq2  CCTTTGA-TTTCTGCCCAACCTGCCTGAT-AACTATGAACATAGAGGCAG  1047

seq1  ATTCACATCAAAATAATGAATTGCACTTATAT-CTACT-GAAGTT  1092
      | || |||||||| |||||||||||||| ||| ||||| ||||||
seq2  A-TCCCATCAAAA-AATGAATTGCACTT-TATCCTACTGGAAGTT  1089

seq1: chr9_52684540_52685601
seq2: B6Ng01-072O11.g_90_1141 (reverse)

seq1  AATGAAATTATATTAAAATGAAAAAGTCACCCAGTGGAGAAAGCCTGTAG  50
      |||||||||||||| ||||| ||||||| ||||||||| |||||||||| 
seq2  AATGAAATTATATT-AAATG-AAAAGTCCCCCAGTGGA-AAAGCCTGTA-  46

seq1  GAAGGAGTGATAGAGGGTGTGGTAGGAAGACAGGCAAGGCTAAGGGCAGA  100
      |||||| ||||||| ||||| |||| ||||||||||| ||||||||||||
seq2  GAAGGA-TGATAGA-GGTGTTGTAGAAAGACAGGCAA-GCTAAGGGCAGA  93

seq1  GCAAGCAGAATTGCCATATACACATATGAAATTATCAAAGAACACTCAAT  150
      || ||||| ||||||| | |||||||||||||||||||||||||||||||
seq2  GC-AGCAG-ATTGCCA-AAACACATATGAAATTATCAAAGAACACTCAAT  140

seq1  TCATCAATCAAATTTTTCATCAAAAGAGCTAAAAAAATTACATTATACAG  200
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATC-ATCAAAATTTTCATCAAAAGAGCTAAAAAAATTACATTATACAG  189

seq1  GGTAAAGGGTATATGAACTAAAAATCAAAATGATAGAAATTATACTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGGTATATGAACTAAAAATCAAAATGATAGAAATTATACTGAAG  239

seq1  AGAACAA-TTTTATTTAACAGAGCAATCATTTTAATTACATTTAGAAAAA  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATTTTTATTTAACAGAGCAATCATTTTAATTACATTTAGAAAAA  289

seq1  AAAATAAGTGATCTACCCTATGTAAAATTGAAATATCTGAGAGAAAAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTGATCTACCCTATGTAAAATTGAAATATCTGAGAGAAAAGAG  339

seq1  AAAAGACTGAGACGGGGAAGTGATTCAGAGAAACGGTGATCAGAATAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGAGACGGGGAAGTGATTCAGAGAAACGGTGATCAGAATAATA  389

seq1  GCATCACACTGTACAGAATACATAATGTATGCACAGGTGATCGACAGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACACTGTACAGAATACATAATGTATGCACAGGTGATCGACAGCCA  439

seq1  TCATAAGACAATGTGGAAATGAAGAGGATGCATGACCAATGTCCTCGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGACAATGTGGAAATGAAGAGGATGCATGACCAATGTCCTCGTGT  489

seq1  TTTACATAGTGCAGTAAAAGACACATAATGGAGTTTGGCATCCTAAGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAGTGCAGTAAAAGACACATAATGGAGTTTGGCATCCTAAGAGT  539

seq1  CTTCAAGTGCTCTTCCAGAGCTTTTGGACCTTACTTGAGTGAATTTCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTGCTCTTCCAGAGCTTTTGGACCTTACTTGAGTGAATTTCTGC  589

seq1  CCATTAAACACATACTCCTTGTCCCCTCCTTCCCACAAGCCTCAGCAGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAACACATACTCCTTGTCCCCTCCTTCCCACAAGCCTCAGCAGCC  639

seq1  ATCATGCTACCATCTATATCCATCACCTCATAAAGATGCAAACATACAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCTACCATCTATATCCATCACCTCATAAAGATGCAAACATACAGC  689

seq1  ATTTGTCTTTCTGATGGGCATTTTTCACTGAGCTCAATACCCTTCAGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTTTCTGATGGGCATTTTTCACTGAGCTCAATACCCTTCAGATG  739

seq1  CAGCCATGTGCTACCATATTAGAATTCCCCCATTTCCAAAGATAGATAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGTGCTACCATATTAGAATTCCCCCATTTCCAAAGATAGATAAT  789

seq1  AGTCTATTGCATATGTATGCCATATTTTAAAATTAAACATTCATTGTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTGCATATGTATGCCATATTTTAAAATTAAACATTCATTGTATT  839

seq1  TTATTGCACATGGGGTTTATTCCTGCATATCTCTCTGTACTGAGAATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCACATGGGGTTTATTCCTGCATATCTCTCTGTACTGAGAATTTT  889

seq1  GTAATTTTGGTTTCTTTCTGCAAACACAGAAATATTATAGGAATATGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTGGTTTCTTTCTGCAAACACAGAAATATTATAGGAATATGTTT  939

seq1  TTGTTTTAATCCCAGGTGTGGGATATGGGGCTGCTTCACAGCAGGTGACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAATCCCAGGTGTGGGATATGGGGCTGCTTCACAGCAGGTGACT  989

seq1  ATGATTTGTCATGTGCTCTAGCAGGGGCATGATTTTTGTCAGCTTCAGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGTCATGTGCTCTAGCAGGGGCATGATTTTTGTCAGCTTCAGAT  1039

seq1  ACTTTTTGCAAGT  1062
      |||||||||||||
seq2  ACTTTTTGCAAGT  1052