BAC Information

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BAC

Clone NameB6Ng01-072P04
Chromosome9 (Build37)
Map Location 96,292,806 - 96,438,373
singlet/doubletdoublet
Overlap geneBC043934, Rnf7, LOC667174
Upstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3
Downstream geneRasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072P04.bB6Ng01-072P04.g
ACCDH890220DH890221
length1,0321,154
definitionDH890220|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P04, 5' end.DH890221|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,292,806 - 96,293,506)(96,437,207 - 96,438,373)
sequence
gaattctttagactccattctcacttcttttttaagtgggagatgctgag
caatcctaccctgcccttctgtttgtcagatctctcagcatactagactt
gatggataacggaaacacttaaatcatcacgaagggtcaaataccccgat
tggcaacctagtaactcacttataagagattttaatttttaaaatatctt
tgtattaattctttgaaaatctcatgcaatatatttttaaagatttattt
tatgtatattgtatatgagtgctctatctctgtgtataacctacatccaa
gaagaaggcatcagatcccatgacagatggttgggagccacgatgtggtt
gctgggaattgaactcaggacctctaaaagagcagccagtgctcttaaca
tgtgagccatctctccagcccccaatacaatatcatatcataataatcat
atttattcatctccattcctcaccctaactcttcccagttctaccccacc
tccactcccaacgccatgtccccatttttgtttgctttgttttctctctt
ttttttttctaaacaacccacggtgttctatttgtgctgcccatatactc
ctggatgtgtggctacccactggagcataatcaacctatgggggtcacac
tcttaaagaaaacagactttccctctcccagaagccatcaaccgtccata
gctcctcagtgtgggtggtgccacttgtgaaccattttccactccacgct
agaatctctccactggcttgatctagcataggcaacaaggctgccatggt
ccaagactgcagcagtcctgcttgttcagaagataccgtttcatctggtc
cttcctgacctctaattctaacagtctccttcctcagtgctggcatgtgt
gtgatacagatgtcccaattgagactgaactcaagtccgctgactcactc
tttccactctgaccacttaggagttcccttgctaaccttcctgtactgta
caaagcaacgcctcagatgaggtctgagtgct
gaattcagagcaatgaaaataaatttcacgccttagagtggggaatggta
acaataaaaaggagccaagggatcttggaagaagactagcccagctcatt
tctccactggtggtggggtttgcacaggctggctcacataacctgcaccg
cattccttagggatcttcacctcctccggcttcctcctatcagtgagaga
cctgccagagaataaccaccgctggttgcctggcaccacactctccggca
ggtaagtgccccgtcatgtgaaacactgtgtctgtgtgcggaccacaagc
ttgaggtctttgcctgggcagagcctcagatggagctgatgcgtgtccag
aattgggaggtggctcgggaacatccagagtctccatgtcactctcttcc
tccaccgtgctgattggtggtgccaggcaataaactggcagcgggtaccg
gttgcccagctcatcgtagcactctgtcagggcactgtgtggtaatgtta
tgtttgcaccatcaatgattgcctgtgccaattcatgatcattgctttca
aaagcctgtgcagtggccttcaaagcatcccagatctcctttccggcctt
caaaagctggtgcagtgtcccggaattcatccctcttgctgcacagttgt
ccatctgttagaggatagtcggttttccattctggtttctcctttttcaa
aggctggtttatgatctagagcaactcccatgcgggaggagtctgggctg
ctgggcgcccacgcacccgtccctggggccgcggccgccaccaaagggtg
ctcgtcccaccgcctcgcccagccctttcctccgtgcccactttctacct
cagcccccggccacctggcccgcagacccggcccgcgtgctttctcagct
cccgctcgaccccgccaggccggacttggaccatcccgggcgggccgcag
caacgctcttccatgcttccccacgccccgcgtctaggccccagcactgc
tgcgctgctgcaggcagccaggctccactgtcccttcctctgagttacat
catggttactgtttagtccatccggagttcagcaccaaatgtaaggggca
gtaaacacactgaactgaatatctggggaaaaaagaaggtcattggtaac
caaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96292806_96293506
seq2: B6Ng01-072P04.b_44_744

seq1  GAATTCTTTAGACTCCATTCTCACTTCTTTTTTAAGTGGGAGATGCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGACTCCATTCTCACTTCTTTTTTAAGTGGGAGATGCTGAG  50

seq1  CAATCCTACCCTGCCCTTCTGTTTGTCAGATCTCTCAGCATACTAGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTACCCTGCCCTTCTGTTTGTCAGATCTCTCAGCATACTAGACTT  100

seq1  GATGGATAACGGAAACACTTAAATCATCACGAAGGGTCAAATACCCCGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATAACGGAAACACTTAAATCATCACGAAGGGTCAAATACCCCGAT  150

seq1  TGGCAACCTAGTAACTCACTTATAAGAGATTTTAATTTTTAAAATATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACCTAGTAACTCACTTATAAGAGATTTTAATTTTTAAAATATCTT  200

seq1  TGTATTAATTCTTTGAAAATCTCATGCAATATATTTTTAAAGATTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAATTCTTTGAAAATCTCATGCAATATATTTTTAAAGATTTATTT  250

seq1  TATGTATATTGTATATGAGTGCTCTATCTCTGTGTATAACCTACATCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATTGTATATGAGTGCTCTATCTCTGTGTATAACCTACATCCAA  300

seq1  GAAGAAGGCATCAGATCCCATGACAGATGGTTGGGAGCCACGATGTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGCATCAGATCCCATGACAGATGGTTGGGAGCCACGATGTGGTT  350

seq1  GCTGGGAATTGAACTCAGGACCTCTAAAAGAGCAGCCAGTGCTCTTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAATTGAACTCAGGACCTCTAAAAGAGCAGCCAGTGCTCTTAACA  400

seq1  TGTGAGCCATCTCTCCAGCCCCCAATACAATATCATATCATAATAATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCATCTCTCCAGCCCCCAATACAATATCATATCATAATAATCAT  450

seq1  ATTTATTCATCTCCATTCCTCACCCTAACTCTTCCCAGTTCTACCCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCATCTCCATTCCTCACCCTAACTCTTCCCAGTTCTACCCCACC  500

seq1  TCCACTCCCAACGCCATGTCCCCATTTTTGTTTGCTTTGTTTTCTCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCCAACGCCATGTCCCCATTTTTGTTTGCTTTGTTTTCTCTCTT  550

seq1  TTTTTTTTCTAAACAACCCACGGTGTTCTATTTGTGCTGCCCATATACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTAAACAACCCACGGTGTTCTATTTGTGCTGCCCATATACTC  600

seq1  CTGGATGTGTGGCTACCCACTGGAGCATAATCAACCTATGGGGGTCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTGTGGCTACCCACTGGAGCATAATCAACCTATGGGGGTCACAC  650

seq1  TCTTAAAGAAAACAGACTTTCCCTCTCCCAGAAGCCATCAACCGTCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGAAAACAGACTTTCCCTCTCCCAGAAGCCATCAACCGTCCATA  700

seq1  G  701
      |
seq2  G  701

seq1: chr9_96437207_96438373
seq2: B6Ng01-072P04.g_68_1221 (reverse)

seq1  TTTGGTTCCCAATGAACCTTTCTTTCTCCCCAGATAGTCCAGTTCAGTGG  50
      ||||||| |||||| |||||  ||| |||||||||| | |||||||||| 
seq2  TTTGGTTACCAATG-ACCTTCTTTTTTCCCCAGATA-TTCAGTTCAGTGT  48

seq1  TTTTACTGCACCTTACATTTGGTGCTGAAACTCTGGATGGAACTAAAACA  100
       |||||||| ||||||||||||||||| ||||| |||||| ||| |||||
seq2  GTTTACTGCCCCTTACATTTGGTGCTG-AACTCCGGATGG-ACT-AAACA  95

seq1  GTAACCAATGATGTAACTTCAGAGGAAGGGGACAGTGGAGCCTGGCTGCC  150
      |||||| |||||||||| ||||||||| ||||||||||||||||||||||
seq2  GTAACC-ATGATGTAAC-TCAGAGGAA-GGGACAGTGGAGCCTGGCTGCC  142

seq1  TGGCAGCAGCGGCAGCAGTGCTGGGGCCTAGACGCGGGGGCGTGGGGAAG  200
      | |||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  T-GCAGCAGC-GCAGCAGTGCTGGGGCCTAGACGC-GGGGCGTGGGGAAG  189

seq1  CATGGGAGGAGCGTTTGCTGCGGCCCGCCCGGGATGGTCCAAGTCCGGCC  250
      ||| ||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  CAT-GGAAGAGCG-TTGCTGCGGCCCGCCCGGGATGGTCCAAGTCCGGCC  237

seq1  TGGCGGGGTCGAGCGGGAGCTGAGGAAAGCACGCGGGCCGGGTCTGCGGG  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGCGGGGTCGAGCGGGAGCTGA-GAAAGCACGCGGGCCGGGTCTGCGGG  286

seq1  CCAGGTGGCCGGGGGCTGAGGTAG-AAGTGGGCACGGAGGAAAGGGCTGG  349
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAGGTGGCCGGGGGCTGAGGTAGAAAGTGGGCACGGAGGAAAGGGCTGG  336

seq1  GCGAGGCGGTGGGACGAGCACCCTTTGGTGGCGGCCGCGGCCCCAGGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGCGGTGGGACGAGCACCCTTTGGTGGCGGCCGCGGCCCCAGGGAC  386

seq1  GGGTGCGTGGGCGCCCAGCAGCCCAGACTCCTCCCGCATGGGAGTTGCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCGTGGGCGCCCAGCAGCCCAGACTCCTCCCGCATGGGAGTTGCTC  436

seq1  TAGATCATAAACCAGCCTTTGAAAAAGGAGAAACCAGAATGGAAAACCGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCATAAACCAGCCTTTGAAAAAGGAGAAACCAGAATGGAAAACCGA  486

seq1  CTATCCTCTAACAGATGGACAACTGTGCAGCAAGAGGGATGAATTCCGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTCTAACAGATGGACAACTGTGCAGCAAGAGGGATGAATTCCGGG  536

seq1  ACACTGCACCAGCTTTTGAAGGCCGGAAAGGAGATCTGGGATGCTTTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCACCAGCTTTTGAAGGCCGGAAAGGAGATCTGGGATGCTTTGAA  586

seq1  GGCCACTGCACAGGCTTTTGAAAGCAATGATCATGAATTGGCACAGGCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGCACAGGCTTTTGAAAGCAATGATCATGAATTGGCACAGGCAA  636

seq1  TCATTGATGGTGCAAACATAACACTACCACACAGTGCCCTGACAGAGTGC  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCATTGATGGTGCAAACATAACATTACCACACAGTGCCCTGACAGAGTGC  686

seq1  TACGATGAGCTGGGCAACCGGTACCCGCTGCCAGTCTATTGCCTGGCACC  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TACGATGAGCTGGGCAACCGGTACCCGCTGCCAGTTTATTGCCTGGCACC  736

seq1  ACCAATCAGCACGGTGGAGGAAGAGAGTGACATGGAGACTCTGGATGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCAGCACGGTGGAGGAAGAGAGTGACATGGAGACTCTGGATGTTC  786

seq1  CCGAGCCACCTCCCAATTCTGGACACGCATCAGCTCCATCTGAGGCTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCCACCTCCCAATTCTGGACACGCATCAGCTCCATCTGAGGCTCTG  836

seq1  CCCAGGCAAAGACCTCAAGCTTGTGGTCCGCACACAGACACAGTGTTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCAAAGACCTCAAGCTTGTGGTCCGCACACAGACACAGTGTTTCA  886

seq1  CATGACGGGGCACTTACCTGCCGGAGAGTGTGGTGCCAGGCAACCAGCGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACGGGGCACTTACCTGCCGGAGAGTGTGGTGCCAGGCAACCAGCGG  936

seq1  TGGTTCTTCTCTGGCAGGTCTCTCACTGATAGGAGGAAGCCGGAGGAGCT  999
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGTTATTCTCTGGCAGGTCTCTCACTGATAGGAGGAAGCCGGAGGAGGT  986

seq1  GAAGATCCCTAAGGACTGCGGTGCAGGTTATGTGAGCCAGCCTGTGCAAA  1049
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAGATCCCTAAGGAATGCGGTGCAGGTTATGTGAGCCAGCCTGTGCAAA  1036

seq1  CCCCACCACCAGTGGAGAACTGAGCTGGGCTAGTCTTCTTCCAAGATCCC  1099
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCCACCACCAGTGGAGAAATGAGCTGGGCTAGTCTTCTTCCAAGATCCC  1086

seq1  TTGGCTCCTTTTTATTGTTACCATTCCCCACTCTAAGGCGTGAAATTTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCCTTTTTATTGTTACCATTCCCCACTCTAAGGCGTGAAATTTAT  1136

seq1  TTTCACTGCTCTGAATTC  1167
      ||||| ||||||||||||
seq2  TTTCATTGCTCTGAATTC  1154