BAC Information

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BAC

Clone NameB6Ng01-073D24
Chromosome9 (Build37)
Map Location 27,712,568 - 27,883,591
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneGm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073D24.bB6Ng01-073D24.g
ACCDH890436DH890437
length1,1801,116
definitionDH890436|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D24, 5' end.DH890437|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,882,387 - 27,883,591)(27,712,568 - 27,713,682)
sequence
gaattcagtgtttaccaagaaccaaatcagcaagatttccttaattagac
cttttcaagcttataaagaaggcacctgaagacagacaacactcccaaag
agccaaagaagagccacactgacagctctgctttcccctgattctgagac
tgttattagcaagcgacctccagaatgccaagcatttgccaatgcttcgg
cctctcccttcccactctgtgcttccacacacctgcagcaggtatctcac
catggaggaggacagctttctgcaactcaccagcaggggctgaaagcctg
tgctgtgcttgaagtacaagatgctccttggaagtaagagatgcctttcc
attttgagcaaaggcctcaggggactagggggctctagtgaccctaccat
gcttatgtaggaaagtctgtatccatatgcttactgatgaaagactatag
gaagaaatgaattccttcaacatggtgagaatcttcaagggttcttaata
aaacatggttcacaagagtcggctacaacagaagactctttgtagacatt
tattttagatgttctgaatttgaacataaaacatgttatagaccagataa
agggctgcatgacagaactgccccagcattccaaaggagctgatagctgt
agaaacagaaatgaagctgattatgtattctctacagtagacaacataga
acttgaatcccagagagaaaaagaaccacatgtcctctctccaagagata
caaagtgacaaagaagacatccagacacaaaacctctagctttgcccttt
ctctataccccctgaccttcacgtgtctagaaaaagcagacccagtccag
tatgcttggcagatgtggcagaagacttttcggaagtttgggttcaggga
ggcatattattgttagaatcataatttctcagaaaaaacagccaatatta
agccatttttaaaaagctgagtctcttaggatctgaattcacttgacatc
tagagatgctaagccgtagtccatgagtcatccttacatgaaagctgata
atgctgtccatgagtagtaaaaatcacttagtgtcagagggaagtttgac
agcatgtggttctagtattccttgctagaggaaattcctatgtggggaat
gtcaaggaaagggaatgcagtctggagaaa
gaattccatgagatacaaaaatcttttcaggattcctcatgcatcattct
cttctctatgtaggaaaattttatgacctatattgctaggactgcagcat
tctcgagatgttcattatctacaggaacattgttagctgggaaggaatcc
taacaatattgcccagttatacttattggcagatacagctctgtggtcaa
caggtggcactatcaaggaggaaaccatcagaacaacatttcttctgttt
agaactctaatttctaaaaaacaaaagtcaaaattatatgatagaacaac
cccagaaagagacaagggaaatgacactggggctgggtactgaagacaaa
ggcctacagatttgggaagagagagaaactgagaggtgacattaattaga
ccatgacaggccaataaaggtccatttcacaactctggagctctctggaa
gatgtgagtgaaatctttggaaaacaggaggaaggctagagtgtgccttg
gagagagaagagaagaggtgaaagcacacagatcctagctcattgccttt
tgtctctgtcagggctctgccctcagccacctcaatgggcttgattttct
ttcttaagactcacacttcataggcatacaacccagaattgtattagctg
tattaagactactttctgcatccaaaaagacctgtttgtttttctgctct
gctttgtatgtagtttaatggttcgagtgttggaatcttgtcccctagat
accaaatggaacctgtaagaggtgaggtctagcggagagtcactaggtcc
caaagcatctgaattgactaattctgtcttggatggcatttcagttctgg
gtaggagtacgagaattttctagtgaaaggttgcagttgaaagggaggac
agccactcaactccttgctttctatacatctgcctatgggctttctgctt
ctcctcttgttgtggggaagctactgttccttaccatatatgttagcaca
tgcttttctaagccctcaagctactagattcaataagtcaaatctcttta
cataagttattcagccatcaggcaacttgtaccacaccaaatagatggaa
gactactgtaggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27882387_27883591
seq2: B6Ng01-073D24.b_43_1222 (reverse)

seq1  TTTCTCTCAGACTGCCATCCCCTTTTCCTTTTACATATTCCCCAACATCA  50
      |||||| ||||||||  ||||  |||||||    | ||||||| |||| |
seq2  TTTCTC-CAGACTGCATTCCC--TTTCCTT---GACATTCCCC-ACAT-A  42

seq1  GAAATTCTCCTCTAGCAAGAGATACTAAGACACACATGCTGTCCATACTT  100
      | |||| ||||||||||||  ||||| |||  |||||||||| || ||||
seq2  GGAATT-TCCTCTAGCAAGGAATACT-AGAACCACATGCTGT-CAAACTT  89

seq1  TCCTTCCTGGACAACTAAGTGATATTTTACTACTCATGGGACAGGCAATT  150
       |||  || ||| |||||||||| ||||||||||||| ||||||   |||
seq2  CCCT--CT-GAC-ACTAAGTGAT-TTTTACTACTCAT-GGACAG--CATT  131

seq1  ATCAGCTTTCATGTTAAGGATGACTCAATGGACTAACGGCTTAGCATCTC  200
      ||||||||||||| |||||||||||| ||||||| |||||||||||||||
seq2  ATCAGCTTTCATG-TAAGGATGACTC-ATGGACT-ACGGCTTAGCATCTC  178

seq1  TAGATGTCAAGTGAATTCAGATTCTTAAGAGACTCAGCTTTTTAAAAATG  250
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  TAGATGTCAAGTGAATTCAGA-TCCTAAGAGACTCAGCTTTTTAAAAATG  227

seq1  GCTTAATATTGGCTGTTTTTTTTCTGAGAAATTATGATTCTAACAATAAT  300
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  GCTTAATATTGGCTG--TTTTTTCTGAGAAATTATGATTCTAACAATAAT  275

seq1  ATGCCTCCCTGAACCCAAACTTCCGAAAAGTCTTCTGCCACATCTGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCCTGAACCCAAACTTCCGAAAAGTCTTCTGCCACATCTGCCAA  325

seq1  GCATACTGGACTGGGTCTGCTTTTTCTAGACACGTGAAGGTCAGGGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTGGACTGGGTCTGCTTTTTCTAGACACGTGAAGGTCAGGGGGTA  375

seq1  TAGAGAAAGGGCAAAGCTAGAGGTTTTGTGTCTGGATGTCTTCTTTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGGGCAAAGCTAGAGGTTTTGTGTCTGGATGTCTTCTTTGTCA  425

seq1  CTTTGTATCTCTTGGAGAGAGGACATGTGGTTCTTTTTCTCTCTGGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATCTCTTGGAGAGAGGACATGTGGTTCTTTTTCTCTCTGGGATT  475

seq1  CAAGTTCTATGTTGTCTACTGTAGAGAATACATAATCAGCTTCATTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTATGTTGTCTACTGTAGAGAATACATAATCAGCTTCATTTCTG  525

seq1  TTTCTACAGCTATCAGCTCCTTTGGAATGCTGGGGCAGTTCTGTCATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAGCTATCAGCTCCTTTGGAATGCTGGGGCAGTTCTGTCATGCA  575

seq1  GCCCTTTATCTGGTCTATAACATGTTTTATGTTCAAATTCAGAACATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTATCTGGTCTATAACATGTTTTATGTTCAAATTCAGAACATCTA  625

seq1  AAATAAATGTCTACAAAGAGTCTTCTGTTGTAGCCGACTCTTGTGAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGTCTACAAAGAGTCTTCTGTTGTAGCCGACTCTTGTGAACCA  675

seq1  TGTTTTATTAAGAACCCTTGAAGATTCTCACCATGTTGAAGGAATTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTAAGAACCCTTGAAGATTCTCACCATGTTGAAGGAATTCATT  725

seq1  TCTTCCTATAGTCTTTCATCAGTAAGCATATGGATACAGACTTTCCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTATAGTCTTTCATCAGTAAGCATATGGATACAGACTTTCCTACA  775

seq1  TAAGCATGGTAGGGTCACTAGAGCCCCCTAGTCCCCTGAGGCCTTTGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGGTAGGGTCACTAGAGCCCCCTAGTCCCCTGAGGCCTTTGCTC  825

seq1  AAAATGGAAAGGCATCTCTTACTTCCAAGGAGCATCTTGTACTTCAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAAGGCATCTCTTACTTCCAAGGAGCATCTTGTACTTCAAGCA  875

seq1  CAGCACAGGCTTTCAGCCCCTGCTGGTGAGTTGCAGAAAGCTGTCCTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGGCTTTCAGCCCCTGCTGGTGAGTTGCAGAAAGCTGTCCTCCT  925

seq1  CCATGGTGAGATACCTGCTGCAGGTGTGTGGAAGCACAGAGTGGGAAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGAGATACCTGCTGCAGGTGTGTGGAAGCACAGAGTGGGAAGGG  975

seq1  AGAGGCCGAAGCATTGGCAAATGCTTGGCATTCTGGAGGTCGCTTGCTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCGAAGCATTGGCAAATGCTTGGCATTCTGGAGGTCGCTTGCTAA  1025

seq1  TAACAGTCTCAGAATCAGGGGAAAGCAGAGCTGTCAGTGTGGCTCTTCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTCTCAGAATCAGGGGAAAGCAGAGCTGTCAGTGTGGCTCTTCTT  1075

seq1  TGGCTCTTTGGGAGTGTTGTCTGTCTTCAGGTGCCTTCTTTATAAGCTTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTTGGGAGTGTTGTCTGTCTTCAGGTGCCTTCTTTATAAGCTTG  1125

seq1  AAAAGGTCTAATTAAGGAAATCTTGCTGATTTGGTTCTTGGTAAACACTG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCTAATTAAGGAAATCTTGCTGATTTGGTTCTTGGTAAACACTG  1175

seq1  AATTC  1205
      |||||
seq2  AATTC  1180

seq1: chr9_27712568_27713682
seq2: B6Ng01-073D24.g_68_1183

seq1  GAATTCCATGAGATACAAAAATCTTTTCAGGATTCCTCATGCATCATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGATACAAAAATCTTTTCAGGATTCCTCATGCATCATTCT  50

seq1  CTTCTCTATGTAGGAAAATTTTATGACCTATATTGCTAGGACTGCAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTATGTAGGAAAATTTTATGACCTATATTGCTAGGACTGCAGCAT  100

seq1  TCTCGAGATGTTCATTATCTACAGGAACATTGTTAGCTGGGAAGGAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAGATGTTCATTATCTACAGGAACATTGTTAGCTGGGAAGGAATCC  150

seq1  TAACAATATTGCCCAGTTATACTTATTGGCAGATACAGCTCTGTGGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATATTGCCCAGTTATACTTATTGGCAGATACAGCTCTGTGGTCAA  200

seq1  CAGGTGGCACTATCAAGGAGGAAACCATCAGAACAACATTTCTTCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCACTATCAAGGAGGAAACCATCAGAACAACATTTCTTCTGTTT  250

seq1  AGAACTCTAATTTCTAAAAAACAAAAGTCAAAATTATATGATAGAACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTAATTTCTAAAAAACAAAAGTCAAAATTATATGATAGAACAAC  300

seq1  CCCAGAAAGAGACAAGGGAAATGACACTGGGGCTGGGTACTGAAGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAGAGACAAGGGAAATGACACTGGGGCTGGGTACTGAAGACAAA  350

seq1  GGCCTACAGATTTGGGAAGAGAGAGAAACTGAGAGGTGACATTAATTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACAGATTTGGGAAGAGAGAGAAACTGAGAGGTGACATTAATTAGA  400

seq1  CCATGACAGGCCAATAAAGGTCCATTTCACAACTCTGGAGCTCTCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACAGGCCAATAAAGGTCCATTTCACAACTCTGGAGCTCTCTGGAA  450

seq1  GATGTGAGTGAAATCTTTGGAAAACAGGAGGAAGGCTAGAGTGTGCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAGTGAAATCTTTGGAAAACAGGAGGAAGGCTAGAGTGTGCCTTG  500

seq1  GAGAGAGAAGAGAAGAGGTGAAAGCACACAGATCCTAGCTCATTGCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAGAGAAGAGGTGAAAGCACACAGATCCTAGCTCATTGCCTTT  550

seq1  TGTCTCTGTCAGGGCTCTGCCCTCAGCCACCTCAATGGGCTTGATTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTCAGGGCTCTGCCCTCAGCCACCTCAATGGGCTTGATTTTCT  600

seq1  TTCTTAAGACTCACACTTCATAGGCATACAACCCAGAATTGTATTAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGACTCACACTTCATAGGCATACAACCCAGAATTGTATTAGCTG  650

seq1  TATTAAGACTACTTTCTGCATCCAAAAAGACCTGTTTGTTTTTCTGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGACTACTTTCTGCATCCAAAAAGACCTGTTTGTTTTTCTGCTCT  700

seq1  GCTTTGTATGTAGTTTAATGGTTCGAGTGTTGGAATCTTGTCCCCTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTATGTAGTTTAATGGTTCGAGTGTTGGAATCTTGTCCCCTAGAT  750

seq1  ACCAAATGGAACCTGTAAGAGGTGAGGTCTAGCGGAGAGTCACTAGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGGAACCTGTAAGAGGTGAGGTCTAGCGGAGAGTCACTAGGTCC  800

seq1  CAAAGCATCTGAATTGACTAATTCTGTCTTGGATGGCATTTCAGTTCT-G  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAAGCATCTGAATTGACTAATTCTGTCTTGGATGGCATTTCAGTTCTGG  850

seq1  GTAGGAGTACGAGAATTTTCTAGTGAAAGGTTGCAGTTGAAA-GGAGGAC  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTAGGAGTACGAGAATTTTCTAGTGAAAGGTTGCAGTTGAAAGGGAGGAC  900

seq1  AGCCACTCAACTCCTTGCTTTCTATACATCTGCCTATGGCCTTTCTGCTT  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCCACTCAACTCCTTGCTTTCTATACATCTGCCTATGGGCTTTCTGCTT  950

seq1  CTCCTCTGGTTGTGAGAAAGCTACTGTTCCTTACCATATATGTTAGCACC  998
      ||||||| |||||| | ||||||||||||||||||||||||||||||| |
seq2  CTCCTCTTGTTGTGGGGAAGCTACTGTTCCTTACCATATATGTTAGCA-C  999

seq1  ATGC-TTTCTAAGCCCTCCAGCTACTAGATTCAATAAGTCAAATCTCTTT  1047
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGCTTTTCTAAGCCCTCAAGCTACTAGATTCAATAAGTCAAATCTCTTT  1049

seq1  ACATTAAAGTTATCCAG-CATCAGGCAACTTGTAACAACACAAAATAGAT  1096
      ||||  ||||||| ||| ||||||||||||||| || |||| ||||||||
seq2  ACAT--AAGTTATTCAGCCATCAGGCAACTTGT-ACCACACCAAATAGAT  1096

seq1  -GAAGACATACTGTA-GTTTG  1115
       |||||| ||||||| |||||
seq2  GGAAGAC-TACTGTAGGTTTG  1116