BAC Information

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BAC

Clone NameB6Ng01-073G24
Chromosome9 (Build37)
Map Location 37,341,963 - 37,474,865
singlet/doubletdoublet
Overlap geneEsam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3
Upstream geneEG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479
Downstream geneLOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073G24.bB6Ng01-073G24.g
ACCDH890570DH890571
length5591,075
definitionDH890570|Mus musculus domesticus DNA, BAC clone: B6Ng01-073G24, 5' end.DH890571|Mus musculus domesticus DNA, BAC clone: B6Ng01-073G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,341,963 - 37,342,527)(37,473,793 - 37,474,865)
sequence
tttcccacctcagcacagggaggtgaagcaggtctccctctcaagtggct
gagcataagacctggggatgaaaggtggaatgacttaagagatggaggga
tcaaaacccgtgggcccttggagtgtggattttaacctgtcttcccctct
ctagttcctccagctcctccatcctgtagtttacagggtgtaccctatgt
cgggaccaatgtgaccctgaactgcaagtccccaaggagtaaacctactg
ctcagtaccagtgggagaggctggccccatcctcccaggtcttctttgga
ccagccttaggtaagagggttcctggaggtctctgagatggtggctgaag
atgagggaagatgagaggtacctcacagactggagtgatgaagacaggct
ttacagaaagggacatggaaagacgatatattagcaggtgctatgctcag
agcttctaagaactggggatacttttattgaggtctggaactaaacagcc
tgatttgagttccagtccatataagaaatatttgggggtagtgtgtgtgt
gtgtgtgtg
gaattcagagccagtgctcacaaggtagaactacagaactagtgaaagga
gagaaacagtttccacaaggtcatcttctgatctctgagtgtgccaggac
acttgcacaacatgacaaacacatatcatcatttcaaaaacagttttaaa
ggttgtcatctctctcgagtggatatgtcattatcaaagccttttgatgg
caaaatgctgagttcaaggtgtctctgatagcttcctgtacaggagtctg
aaggagcctcgagagaaaaggctcatcagatctaaacgaccaagtcagta
cattggtagcacaagccaaactgtgtgtccaacttcatcatgacctgtcc
tcccgtgacacagcagtaccaggcctagaaagctgaggctctcaaagaag
gcaaggcctgccctccacagaaagctaccaacttataaggatgtcccctc
acccataaaactcttgagtgactgacttccattcctctgctgcacctaag
gctgcctcaaagctctgctccttttgcagggtctccgatcagctgtttct
ctcccagcaacttcagtgtcaggcaggctgcatacgtggatagctcatgc
tgggactcgctggctcaccatacgcaggacaaggctggccagtacaaggt
gaaatctctctggcctcacaaggtaaagcagtcagaggtccttttcagga
cggcttccaggcttgggagttgaggggtagactgaaccacttaaagtctc
tcacacaccactccaccttgcccattgcattcccttccacctcactctgc
ccttgcccattccttttgccagctgactttcttattccaggggttcttca
aatgcctgctggtctctggtgtacacattattcggcagttgaaagctgtc
ctctttcatctgattggaagtttgtgccgttgggtgaggcttgtttgaca
acagatgtaggtggaaaggggtccctctggtggtgcttcatttgtaaaga
aattcagatatcagtatctaggcttgctcagaattgtctggtaatctctg
agaaaagcatccggcggtaactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37341963_37342527
seq2: B6Ng01-073G24.b_43_607

seq1  GAATTCTTTCCCACCTCAGCACAGGGAGGTGAAGCAGGTCTCCCTCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCACCTCAGCACAGGGAGGTGAAGCAGGTCTCCCTCTCAA  50

seq1  GTGGCTGAGCATAAGACCTGGGGATGAAAGGTGGAATGACTTAAGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGAGCATAAGACCTGGGGATGAAAGGTGGAATGACTTAAGAGATG  100

seq1  GAGGGATCAAAACCCGTGGGCCCTTGGAGTGTGGATTTTAACCTGTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATCAAAACCCGTGGGCCCTTGGAGTGTGGATTTTAACCTGTCTTC  150

seq1  CCCTCTCTAGTTCCTCCAGCTCCTCCATCCTGTAGTTTACAGGGTGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTAGTTCCTCCAGCTCCTCCATCCTGTAGTTTACAGGGTGTACC  200

seq1  CTATGTCGGGACCAATGTGACCCTGAACTGCAAGTCCCCAAGGAGTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCGGGACCAATGTGACCCTGAACTGCAAGTCCCCAAGGAGTAAAC  250

seq1  CTACTGCTCAGTACCAGTGGGAGAGGCTGGCCCCATCCTCCCAGGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTCAGTACCAGTGGGAGAGGCTGGCCCCATCCTCCCAGGTCTTC  300

seq1  TTTGGACCAGCCTTAGGTAAGAGGGTTCCTGGAGGTCTCTGAGATGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACCAGCCTTAGGTAAGAGGGTTCCTGGAGGTCTCTGAGATGGTGG  350

seq1  CTGAAGATGAGGGAAGATGAGAGGTACCTCACAGACTGGAGTGATGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATGAGGGAAGATGAGAGGTACCTCACAGACTGGAGTGATGAAGA  400

seq1  CAGGCTTTACAGAAAGGGACATGGAAAGACGATATATTAGCAGGTGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTACAGAAAGGGACATGGAAAGACGATATATTAGCAGGTGCTAT  450

seq1  GCTCAGAGCTTCTAAGAACTGGGGATACTTTTATTGAGGTCTGGAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGCTTCTAAGAACTGGGGATACTTTTATTGAGGTCTGGAACTAA  500

seq1  ACAGCCTGATTTGAGTTCCAGTCCATATAAGAAATATTTGGGGGTAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGATTTGAGTTCCAGTCCATATAAGAAATATTTGGGGGTAGTGT  550

seq1  GTGTGTGTGTGTGTG  565
      |||||||||||||||
seq2  GTGTGTGTGTGTGTG  565

seq1: chr9_37473793_37474865
seq2: B6Ng01-073G24.g_68_1142 (reverse)

seq1  TTCAGTTAACGACCGGATGACTCTTCTCAGAGA-TAACAGACAATACTGA  49
      |||||||| || ||||||| || |||||||||| || |||||||| ||||
seq2  TTCAGTTACCG-CCGGATG-CTTTTCTCAGAGATTACCAGACAATTCTGA  48

seq1  GCTAGGCCTAGATACTGATACCTGAATTTCTCTAC-AATGAAGCA-CACC  97
      || | ||||||||||||||| |||||||||| ||| ||||||||| ||||
seq2  GC-AAGCCTAGATACTGATATCTGAATTTCTTTACAAATGAAGCACCACC  97

seq1  AGAGGGACCCCTTT-CACCTACATCTGCTTGTC-AACAAGCCTCACCCAC  145
      |||||||||||||| |||||||||||| ||||| ||||||||||||||| 
seq2  AGAGGGACCCCTTTCCACCTACATCTG-TTGTCAAACAAGCCTCACCCAA  146

seq1  GGGCACAAAACTTCCAATCAGATGAAAGAGGACAGCTTTCAACTGCCGAC  195
       ||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  CGGCAC-AAACTTCCAATCAGATGAAAGAGGACAGCTTTCAACTGCCGAA  195

seq1  TAATGTGTACACCAGAGACCAGCAGGCATTTGAAGAACCCCTGGAATATG  245
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAATGTGTACACCAGAGACCAGCAGGCATTTGAAGAACCCCTGGAATAAG  245

seq1  AAAGTCAGCTGGCAAAAGGAATGGGCAAGGGCAGAGTGAGGTGGAAGGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGCTGGCAAAAGGAATGGGCAAGGGCAGAGTGAGGTGGAAGGGA  295

seq1  ATGCAATGGGCAAGGTGGAGTGGTGTGTGAGAGACTTT-AGTGGTTCAGT  344
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGCAATGGGCAAGGTGGAGTGGTGTGTGAGAGACTTTAAGTGGTTCAGT  345

seq1  CTACCCCTCAACTCCCAAGCCTGGAAGCCGTCCTG-AAAGGACCTCTGAC  393
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTACCCCTCAACTCCCAAGCCTGGAAGCCGTCCTGAAAAGGACCTCTGAC  395

seq1  TGCTTTACCTTGTGAGGCCAGAGAGATTTCACCTTGTACTGGCCAGCCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTACCTTGTGAGGCCAGAGAGATTTCACCTTGTACTGGCCAGCCTT  445

seq1  GTCCTGCGTATGGTGAGCCAGCGAGTCCCAGCATGAGCTATCCACGTATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCGTATGGTGAGCCAGCGAGTCCCAGCATGAGCTATCCACGTATG  495

seq1  CAGCCTGCCTGACACTGAAGTTGCTGGGAGAGAAACAGCTGATCGGAGAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCCTGACACTGAAGTTGCTGGGAGAGAAACAGCTGATCGGAGAC  545

seq1  CCTGCAAAAGGAGCAGAGCTTTGAGGCAGCCTTAGGTGCAGCAGAGGAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAAAGGAGCAGAGCTTTGAGGCAGCCTTAGGTGCAGCAGAGGAAT  595

seq1  GGAAGTCAGTCACTCAAGAGTTTTATGGGTGAGGGGACATCCTTATAAGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCAGTCACTCAAGAGTTTTATGGGTGAGGGGACATCCTTATAAGT  645

seq1  TGGTAGCTTTCTGTGGAGGGCAGGCCTTGCCTTCTTTGAGAGCCTCAGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTTTCTGTGGAGGGCAGGCCTTGCCTTCTTTGAGAGCCTCAGCT  695

seq1  TTCTAGGCCTGGTACTGCTGTGTCACGGGAGGACAGGTCATGATGAAGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCCTGGTACTGCTGTGTCACGGGAGGACAGGTCATGATGAAGTT  745

seq1  GGACACACAGTTTGGCTTGTGCTACCAATGTACTGACTTGGTCGTTTAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACAGTTTGGCTTGTGCTACCAATGTACTGACTTGGTCGTTTAGA  795

seq1  TCTGATGAGCCTTTTCTCTCGAGGCTCCTTCAGACTCCTGTACAGGAAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAGCCTTTTCTCTCGAGGCTCCTTCAGACTCCTGTACAGGAAGC  845

seq1  TATCAGAGACACCTTGAACTCAGCATTTTGCCATCAAAAGGCTTTGATAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAGACACCTTGAACTCAGCATTTTGCCATCAAAAGGCTTTGATAA  895

seq1  TGACATATCCACTCGAGAGAGATGACAACCTTTAAAACTGTTTTTGAAAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATCCACTCGAGAGAGATGACAACCTTTAAAACTGTTTTTGAAAT  945

seq1  GATGATATGTGTTTGTCATGTTGTGCAAGTGTCCTGGCACACTCAGAGAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATGTGTTTGTCATGTTGTGCAAGTGTCCTGGCACACTCAGAGAT  995

seq1  CAGAAGATGACCTTGTGGAAACTGTTTCTCTCCTTTCACTAGTTCTGTAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATGACCTTGTGGAAACTGTTTCTCTCCTTTCACTAGTTCTGTAG  1045

seq1  TTCTACCTTGTGAGCACTGGCTCTGAATTC  1073
      ||||||||||||||||||||||||||||||
seq2  TTCTACCTTGTGAGCACTGGCTCTGAATTC  1075