BAC Information

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BAC

Clone NameB6Ng01-073M23
Chromosome9 (Build37)1 (Build37)
Map Location 94,339,496 - 94,340,05261,720,139 - 61,720,696
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC674371, LOC384967, EG384968
Downstream gene1190002N15Rik, EG667601, Slc9a9, Chst2, LOC667088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073M23.bB6Ng01-073M23.g
ACCDH890828DH890829
length1,0271,100
definitionDH890828|Mus musculus domesticus DNA, BAC clone: B6Ng01-073M23, 5' end.DH890829|Mus musculus domesticus DNA, BAC clone: B6Ng01-073M23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,339,496 - 94,340,052)(61,720,139 - 61,720,696)
sequence
gaattcacacagtaaatttcaccatttcaagcattgaattgttttaatac
atcctcagtccactttactacattttcataatgctttaaaaatccattat
taattagtaactactttttttgttcgtgttccccccagattctcggagcc
aacagtacatttcccgtgtctctggatttgcctcctttgattggttgata
gaagtcacaaagcatgagacctcttgttgcttctttctattagcataata
ttttcaagattcatccattttgtgggacattccttctttgtgttgtcata
ttagtgcttcatttactatgaaacaatgctctactgagtagacataccac
atttgtttattcattcatcatttgctacatatatggtcctttctagttgg
aggcattatgaatcttcatgtttgagtttctatgtaggagtctttacatc
tctctttgtgcaagttaggttgctgtgtcacgtggtaactttatgaggaa
cattttgaagagtcattgaactgttgaaatagcctaagcatgatttaaaa
tttctaaaagtggtgaatacatgtttgaatttctccacattcattagtct
ccctttttgtttccaatcatcctagtgagtgggaaaggacacctgcctgt
agctttaaactgcatttctctgatagcttaacagtatttatagaaacaaa
acaaaacaaaacaaaacaaaaacttagcttggtgtcacaggatgagtatc
cactctcagcacctgatgaaaactgaagctggaagactgagttcaagacc
atcctgggctacataaaccaaaacaaatgacccaaatacccccgttccct
tgttctttctttgatttcctgtattccttctcatcttagttttcccatat
tgcttccacatatgagttgctgcatctattgcatagtcagtcacatttgt
tggtctgtgctctgtgtgtgtgtacacttgcacgtgcgtgagcctgaatg
cctgtataagagtggctgaagtaagtc
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatgagagtaatagtggcttcataaatgagttgg
gtagagtatcttctacttctattttgtgaaatagtttgtgcagaactgga
attagatcttctttgaaggtctgatagaactctgcactaaacccatctgg
tcctgggctttttttggttgggagactattaataactgcttctatttctt
taggtgatatgggactgtttagatggtcaacttgatcctgattcaacttt
ggtacctggtatctgtccagaaatttgtccatttcgtccaggttttccag
ttttgttgagtatagccttttgtagaaggatctgatggtgatttggattt
cttcaggatctgttgttatgtctcccttttcacttctgattttgttaatt
aggattttgtccctgtgccctttagtgagtctagctaagggtttatctat
cttgttgattttctcaaagaaccaactcctcgcctggttaattctttgaa
tagttctttttgtttccacttggttgtttcacccctgagtttgattattt
cctgccgtctactcctcttgggtgaatttgctctttttttctagagcttt
agatgtgtgtcaagctgctagttgtgctggctcccgttcttcctggaggc
actcgagctatgagtttccctctagaatgcttcatgggtcccctacgttt
gggaacgtggtggcctcttttcattaacgcctaggaggtccttaatttct
ttcttaattcctccctgactaaggtactctgtaaaaggagtgttattcag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94339496_94340052
seq2: B6Ng01-073M23.b_42_598 (reverse)

seq1  TTAGAAATTTTAAATCATGCTTAGGCTATTTCAACAGTTCAATGACTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTTTAAATCATGCTTAGGCTATTTCAACAGTTCAATGACTCTT  50

seq1  CAAAATGTTCCTCATAAAGTTACCACGTGACACAGCAACCTAACTTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTTCCTCATAAAGTTACCACGTGACACAGCAACCTAACTTGCAC  100

seq1  AAAGAGAGATGTAAAGACTCCTACATAGAAACTCAAACATGAAGATTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGATGTAAAGACTCCTACATAGAAACTCAAACATGAAGATTCAT  150

seq1  AATGCCTCCAACTAGAAAGGACCATATATGTAGCAAATGATGAATGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTCCAACTAGAAAGGACCATATATGTAGCAAATGATGAATGAATA  200

seq1  AACAAATGTGGTATGTCTACTCAGTAGAGCATTGTTTCATAGTAAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGTGGTATGTCTACTCAGTAGAGCATTGTTTCATAGTAAATGAA  250

seq1  GCACTAATATGACAACACAAAGAAGGAATGTCCCACAAAATGGATGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAATATGACAACACAAAGAAGGAATGTCCCACAAAATGGATGAATC  300

seq1  TTGAAAATATTATGCTAATAGAAAGAAGCAACAAGAGGTCTCATGCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATATTATGCTAATAGAAAGAAGCAACAAGAGGTCTCATGCTTTG  350

seq1  TGACTTCTATCAACCAATCAAAGGAGGCAAATCCAGAGACACGGGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTATCAACCAATCAAAGGAGGCAAATCCAGAGACACGGGAAATG  400

seq1  TACTGTTGGCTCCGAGAATCTGGGGGGAACACGAACAAAAAAAGTAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTGGCTCCGAGAATCTGGGGGGAACACGAACAAAAAAAGTAGTTA  450

seq1  CTAATTAATAATGGATTTTTAAAGCATTATGAAAATGTAGTAAAGTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAATAATGGATTTTTAAAGCATTATGAAAATGTAGTAAAGTGGAC  500

seq1  TGAGGATGTATTAAAACAATTCAATGCTTGAAATGGTGAAATTTACTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGTATTAAAACAATTCAATGCTTGAAATGGTGAAATTTACTGTG  550

seq1  TGAATTC  557
      |||||||
seq2  TGAATTC  557

seq1: chr1_61720139_61720696
seq2: B6Ng01-073M23.g_623_1167 (reverse)

seq1  CTGAATAACACTCTTCTCAATGA-TACCTTGGTCAAGGAAGGAATAAAGA  49
      ||||||||||||| | | |  || |||||| ||| ||| |||||| ||||
seq2  CTGAATAACACTCCTTTTACAGAGTACCTTAGTC-AGGGAGGAATTAAGA  49

seq1  AAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGACACAACGTAC  99
      |||||||||| ||| |  |||   |||||||||| || | ||| |||| |
seq2  AAGAAATTAAGGACCTCCTAGGCGTTAATGAAAA-GAGGCCACCACGTTC  98

seq1  CCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGC  149
      |||||| || ||||| | ||| ||||| |||| |||||||||||||||||
seq2  CCAAACGTAGGGGAC-CCATG-AAGCA-TTCT-AGAGGGAAACTCATAGC  144

seq1  GCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGA  199
       | ||||||||||| |||| |||||||| ||||||| |||||||||||||
seq2  TC-GAGTGCCTCCAGGAAG-AACGGGAGCCAGCACA-ACTAGCAGCTTGA  191

seq1  CAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG  249
      | |||||||| ||||| ||||||||||||  |||||||||||||||||||
seq2  C-ACACATCT-AAAGCTCTAGAAAAAAAG--AGCAAATTCACCCAAGAGG  237

seq1  AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA  299
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAA-CAACCAAGTGGA  286

seq1  AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTG  349
      ||||| ||||||||||||||||||||||||  ||||||||||||||||||
seq2  AACAAAAAGAACTATTCAAAGAATTAACCAGGCGAGGAGTTGGTTCTTTG  336

seq1  AGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCAC  386

seq1  AGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAAC  449
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGGACAAAATCCTAATTAACAAAATCAGAAGTGAAAAGGGAGACATAAC  436

seq1  AACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGC  499
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACAGATCCTGAAGAAATCCAAATCACCATCAGATCCTTCTACAAAAGGC  486

seq1  TATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGAC  536

seq1  AGATACCAG  558
      |||||||||
seq2  AGATACCAG  545