BAC Information

Click to search

BAC

Clone NameB6Ng01-073N11
Chromosome9 (Build37)
Map Location 99,405,306 - 99,406,499
singlet/doubletsinglet
Overlap geneArmc8
Upstream geneRbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534
Downstream geneDbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073N11.bB6Ng01-073N11.g
ACCDH890852DH890853
length1,194207
definitionDH890852|Mus musculus domesticus DNA, BAC clone: B6Ng01-073N11, 5' end.DH890853|Mus musculus domesticus DNA, BAC clone: B6Ng01-073N11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttcctcctggcatgggagaccccaaagcagagttaatggcaca
aatttcagtttatatctataaacagtcaattctttccctgtttataaccc
aaaggctacaaggaaaccctctaggtttaagtttaaagagtaataataag
catacagaaggccaaacaagtaccaggagctgaagctaatacagacgccc
gggctggggcttccctctcacacaggaaacgctgatgctctgagagccat
actctggaagtctgcagctgctcagaccgtgtgactcaagagaagcatca
aagtgttctgtcagctgtatccctagacctgggcgctcagctctcacagg
ctctgtgcgactgctgcgactttctcaccttcattaaaggtttccacacc
gcatgatcctggaaactggttcgaagctgttgtacagatctggataaact
gtgcaaacatctataaagaatgatcaaaattagcttcccgagaagccaaa
gctcacatttcaaatcaattgcttggcttttcactagcacgaactacact
tcaagcatggctatcaacactaagtcagctacagcaagacacctctcggg
cgttggaggctaggttctgttaggtaacattacacactgcatggattcac
ctgagcatacgttccaggaacatctgcatcctgtgcttagtgaaggaccg
gaaaggaaacaggctaaacacagagcaagggagttgtttattcagaccac
gtaaaactcatacctgacagcagctaaccgcaccttgacactagactcag
acaagccagtcacaattcggtccatcatagtttcagtctcaatgatctgg
agaaaaaggttaatgctgcataaataacaacatgaaggtgacaaacttca
ctgcttgtaatgcaagtatgttaatgtccattcagagtttcatggcttta
gcaaaagattttacttctcgacatcactttgcagtggggcaagcagctcc
gccagaaagatggggcaagcaccccactaggatgagccaggatgaatgac
aggcataatcatgtttctttatttttaagtatttaaaacaaagatttaag
gcctagtactacagaaggtgtgtcatgagtccactctgggcgtgccagga
ggtggtaaaatccaaggctttccctgtaagaatgataaccgatc
tgagggaaagaggaggcctcggtgggcaaagtgcttgttgtaagaatctg
agtcagccaggcacagtggtacatattttaatccatcacccggcaggcag
atgcaagcctggattacagtgtgagttccaagatagtgagagctacatag
taaaaccctgtctaaggaaaggaaagggaaaaggacaggagaggggaggg
gagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99405306_99406499
seq2: B6Ng01-073N11.b_45_1238

seq1  GAATTCCTTCCTCCTGGCATGGGAGACCCCAAAGCAGAGTTAATGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTCCTGGCATGGGAGACCCCAAAGCAGAGTTAATGGCACA  50

seq1  AATTTCAGTTTATATCTATAAACAGTCAATTCTTTCCCTGTTTATAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGTTTATATCTATAAACAGTCAATTCTTTCCCTGTTTATAACCC  100

seq1  AAAGGCTACAAGGAAACCCTCTAGGTTTAAGTTTAAAGAGTAATAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTACAAGGAAACCCTCTAGGTTTAAGTTTAAAGAGTAATAATAAG  150

seq1  CATACAGAAGGCCAAACAAGTACCAGGAGCTGAAGCTAATACAGACGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAAGGCCAAACAAGTACCAGGAGCTGAAGCTAATACAGACGCCC  200

seq1  GGGCTGGGGCTTCCCTCTCACACAGGAAACGCTGATGCTCTGAGAGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGCTTCCCTCTCACACAGGAAACGCTGATGCTCTGAGAGCCAT  250

seq1  ACTCTGGAAGTCTGCAGCTGCTCAGACCGTGTGACTCAAGAGAAGCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGAAGTCTGCAGCTGCTCAGACCGTGTGACTCAAGAGAAGCATCA  300

seq1  AAGTGTTCTGTCAGCTGTATCCCTAGACCTGGGCGCTCAGCTCTCACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCTGTCAGCTGTATCCCTAGACCTGGGCGCTCAGCTCTCACAGG  350

seq1  CTCTGTGCGACTGCTGCGACTTTCTCACCTTCATTAAAGGTTTCCACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCGACTGCTGCGACTTTCTCACCTTCATTAAAGGTTTCCACACC  400

seq1  GCATGATCCTGGAAACTGGTTCGAAGCTGTTGTACAGATCTGGATAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATCCTGGAAACTGGTTCGAAGCTGTTGTACAGATCTGGATAAACT  450

seq1  GTGCAAACATCTATAAAGAATGATCAAAATTAGCTTCCCGAGAAGCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAACATCTATAAAGAATGATCAAAATTAGCTTCCCGAGAAGCCAAA  500

seq1  GCTCACATTTCAAATCAATTGCTTGGCTTTTCACTAGCACGAACTACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATTTCAAATCAATTGCTTGGCTTTTCACTAGCACGAACTACACT  550

seq1  TCAAGCATGGCTATCAACACTAAGTCAGCTACAGCAAGACACCTCTCGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCATGGCTATCAACACTAAGTCAGCTACAGCAAGACACCTCTCGGG  600

seq1  CGTTGGAGGCTAGGTTCTGTTAGGTAACATTACACACTGCATGGATTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGAGGCTAGGTTCTGTTAGGTAACATTACACACTGCATGGATTCAC  650

seq1  CTGAGCATACGTTCCAGGAACATCTGCATCCTGTGCTTAGTGAAGGACCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATACGTTCCAGGAACATCTGCATCCTGTGCTTAGTGAAGGACCG  700

seq1  GAAAGGAAACAGGCTAAACACAGAGCAAGGGAGTTGTTTATTCAGACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAACAGGCTAAACACAGAGCAAGGGAGTTGTTTATTCAGACCAC  750

seq1  GTAAAACTCATACCTGACAGCAGCTAACCGCACCTTGACACTAGACTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTCATACCTGACAGCAGCTAACCGCACCTTGACACTAGACTCAG  800

seq1  ACAAGCCAGTCACAATTCGGTCCATCATAGTTTCAGTCTCAATGATCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAGTCACAATTCGGTCCATCATAGTTTCAGTCTCAATGATCTGG  850

seq1  AGAAAAAGGTTAATGCTGCATAAATAACAACATGAAGGTGACAAACTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGGTTAATGCTGCATAAATAACAACATGAAGGTGACAAACTTCA  900

seq1  CTGCTTGTAAATGCAAGTATGTTAATGTCCATTCAGAGTTTCATGGCTTT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGT-AATGCAAGTATGTTAATGTCCATTCAGAGTTTCATGGCTTT  949

seq1  AGCAAAAGATTTTACCTCTCGACAATCACTTTGCAGTGGGGCAGGCAGCT  1000
      ||||||||||||||| ||||||| ||||||||||||||||||| ||||||
seq2  AGCAAAAGATTTTACTTCTCGAC-ATCACTTTGCAGTGGGGCAAGCAGCT  998

seq1  -CGCCAGAAAGATGGGGCAAGCA-CCCACTAAGGATGAGCCAGGATGAAT  1048
       |||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  CCGCCAGAAAGATGGGGCAAGCACCCCACT-AGGATGAGCCAGGATGAAT  1047

seq1  GACAGGCATAATCATGTTTCTTTATTTTTAAGGTATTTAAAAC-AAGATT  1097
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  GACAGGCATAATCATGTTTCTTTATTTTTAA-GTATTTAAAACAAAGATT  1096

seq1  TAAAAGGCCTAAGTACTACAG-AGGTGTG-CATGAGTC--ATCTGGGC-T  1142
      |  ||||||| |||||||||| ||||||| ||||||||   ||||||| |
seq2  T--AAGGCCT-AGTACTACAGAAGGTGTGTCATGAGTCCACTCTGGGCGT  1143

seq1  GCAGGGATGTGGGTAAAATACGAGGCGTTTCCTGTAAGAATGATAACGGA  1192
      ||  ||| || |||||||| | |||| || ||||||||||||||||| ||
seq2  GCCAGGAGGT-GGTAAAATCCAAGGCTTTCCCTGTAAGAATGATAACCGA  1192

seq1  TC  1194
      ||
seq2  TC  1194