BAC Information

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BAC

Clone NameB6Ng01-074F17
Chromosome9 (Build37)
Map Location 107,894,658 - 108,088,630
singlet/doubletdoublet
Overlap geneD330022A01Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, 6230427J02Rik
Downstream geneDag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074F17.bB6Ng01-074F17.g
ACCDH891229DH891230
length1,0981,215
definitionDH891229|Mus musculus domesticus DNA, BAC clone: B6Ng01-074F17, 5' end.DH891230|Mus musculus domesticus DNA, BAC clone: B6Ng01-074F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,894,658 - 107,895,751)(108,087,397 - 108,088,630)
sequence
gaattcactggaaacagcggaagatgggattttccagcagctcctggagc
ctgccggggatctaactgctctgtcatggggtaggtggagccagagctgg
agtctcagaagccacctgatggctatgtttaagcaactagccaggcaaca
acagagttagcctgagaaacagcttcctccaccatttcttcaggctacca
tggcactgctcaggctcctggagtttctttttgctttacttatccctggt
aaggagcagtcagatgtgtgtgtgggggaccccagtctggcagtgaagtt
ctgacctgtagataagctaatgtggagggcagaggctaaggaacccctga
cccttgctccttctcttggctgtttcttcagtcacgttcttcatctctct
tcacttgtccagtgtcacctgtaggagacaaggaaggactttggctgctt
ggcctccagatgtggtcaggccctaaagaaaaaggctattgctgtttttc
taaatgtggctttctcctagtcctctacagcctgccctggactatgtata
tttctgagaacaatggccctgggacggtccttcggcctttctccttcaac
tgttcctcctacatgcccaccctggagttactcagtgtgagaccacctac
cagcttcttcaataaacccagcatgcatggggataagggagtctacctgg
tgatggtaaggccatggatacaattagggattgtggggaccaaagccaga
agtggtcagagagacagaaagcctaggccctacacgtcttttgtcgatcc
accacaggtgtccttgagtagctctgctcggctggatgcccttgcagtga
accagtatgagctgcagctgcagtacagatgtggtaactttgtggtagac
ggatcaatcttcgttcatgtgcagcgggacccggggcggatccgctgcac
tggtgcttttgccagcccaggtgagcctaggagcagcgggttgggagaag
aaatgtgaatatgccctcaacagcgctccctgacctcctcttttggacag
ctggggaattcatttatgtggcaaagagacccatcacacaccggggcc
gaattcaggggtaggggcgggaagaggaatgtggtctaccttggcagaga
cagtgagcaaagagactgaatgcaagagactcggagagagacagggacaa
gccagctgagacatctctctctaaatgcccatcaaaagccacagttccct
tttagttcatacgacatggagaagtcttgaggcaaacatgacaggaaccc
ttatcatttgctggaaggtgagagtgcccacgaaccacgtggagttcttt
tctcaaaacggattcatcaggcacagtgtctgaatccaggtcccccgcat
tagctgatagccgtggactagcagtctacagtgaacctgtgaaggcagag
cgataggtggaattgccagatttggaaataaccgtcatttgtcatttaga
agccttgtctggccccagtggctgagttttctgggagtacaggtatgaat
tgaagtgaccttcctttagaatagtgacattgtcaatcttacctggagag
ggcagctttgtgacattgtccccagcaccagtggggctgtcaggatgctg
tcagtggcttgctttttttttttttttttctattttggagacagagtctt
attttgcagcctagctagcctggaattcaccacatacataacccagggtg
gacttggactagggctgccccacctgcctctgctttacaagagctgggac
gacaggtgtgagtgaccaagcctggctctgagttaaaaattcttttttct
agtggagatattaggagaagacaggctatttaaacaagcaagcaagtgag
caaacaaacaaacaaacaaacaaaacacgatgactatggaacacttcagc
atatgtaacaacagagaggattgtccactaaagcctcatgttccatttac
gtggatacaggcacgctcaactcagccaatcacgtttcctttacctccct
tctcactgagacaaattccaacagtcctacatcccatcagcagcattctc
actgtatcctccaagaaatgagctctgaataaacgtaaccatgacgaccc
catcatagctgggtagtattctttcctccatggagggtatgctatgaatc
aatccaaggcctcaaaatcgtgccagaacctgttcttcaagcttaacaca
tatatcaagcgaccggtctctaaaaagatatttatatggcatgtgtctgt
gcgtaatgcatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107894658_107895751
seq2: B6Ng01-074F17.b_44_1141

seq1  GAATTCACTGGAAACAGCGGAAGATGGGATTTTCCAGCAGCTCCTGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAAACAGCGGAAGATGGGATTTTCCAGCAGCTCCTGGAGC  50

seq1  CTGCCGGGGATCTAACTGCTCTGTCATGGGGTAGGTGGAGCCAGAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGGGGATCTAACTGCTCTGTCATGGGGTAGGTGGAGCCAGAGCTGG  100

seq1  AGTCTCAGAAGCCACCTGATGGCTATGTTTAAGCAACTAGCCAGGCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGAAGCCACCTGATGGCTATGTTTAAGCAACTAGCCAGGCAACA  150

seq1  ACAGAGTTAGCCTGAGAAACAGCTTCCTCCACCATTTCTTCAGGCTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTAGCCTGAGAAACAGCTTCCTCCACCATTTCTTCAGGCTACCA  200

seq1  TGGCACTGCTCAGGCTCCTGGAGTTTCTTTTTGCTTTACTTATCCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGCTCAGGCTCCTGGAGTTTCTTTTTGCTTTACTTATCCCTGGT  250

seq1  AAGGAGCAGTCAGATGTGTGTGTGGGGGACCCCAGTCTGGCAGTGAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCAGTCAGATGTGTGTGTGGGGGACCCCAGTCTGGCAGTGAAGTT  300

seq1  CTGACCTGTAGATAAGCTAATGTGGAGGGCAGAGGCTAAGGAACCCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGTAGATAAGCTAATGTGGAGGGCAGAGGCTAAGGAACCCCTGA  350

seq1  CCCTTGCTCCTTCTCTTGGCTGTTTCTTCAGTCACGTTCTTCATCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTCCTTCTCTTGGCTGTTTCTTCAGTCACGTTCTTCATCTCTCT  400

seq1  TCACTTGTCCAGTGTCACCTGTAGGAGACAAGGAAGGACTTTGGCTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTCCAGTGTCACCTGTAGGAGACAAGGAAGGACTTTGGCTGCTT  450

seq1  GGCCTCCAGATGTGGTCAGGCCCTAAAGAAAAAGGCTATTGCTGTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAGATGTGGTCAGGCCCTAAAGAAAAAGGCTATTGCTGTTTTTC  500

seq1  TAAATGTGGCTTTCTCCTAGTCCTCTACAGCCTGCCCTGGACTATGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGGCTTTCTCCTAGTCCTCTACAGCCTGCCCTGGACTATGTATA  550

seq1  TTTCTGAGAACAATGGCCCTGGGACGGTCCTTCGGCCTTTCTCCTTCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGAACAATGGCCCTGGGACGGTCCTTCGGCCTTTCTCCTTCAAC  600

seq1  TGTTCCTCCTACATGCCCACCCTGGAGTTACTCAGTGTGAGACCACCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCTACATGCCCACCCTGGAGTTACTCAGTGTGAGACCACCTAC  650

seq1  CAGCTTCTTCAATAAACCCAGCATGCATGGGGATAAGGGAGTCTACCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTCAATAAACCCAGCATGCATGGGGATAAGGGAGTCTACCTGG  700

seq1  TGATGGTAAGGCCATGGATACAATTAGGGATTGTGGGGACCAAAGCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTAAGGCCATGGATACAATTAGGGATTGTGGGGACCAAAGCCAGA  750

seq1  AGTGGTCAGAGAGACAGAAAGCCTAGGCCCTACACGTCTTTTGTCGATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCAGAGAGACAGAAAGCCTAGGCCCTACACGTCTTTTGTCGATCC  800

seq1  ACCACAGGTGTCCTTGAGTAGCTCTGCTCGGCTGGATGCCCTTGCAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGTGTCCTTGAGTAGCTCTGCTCGGCTGGATGCCCTTGCAGTGA  850

seq1  ACCAGTATGAGCTGCAGCTGCAGTACAGATGTGGTAACTTTGTGGTAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTATGAGCTGCAGCTGCAGTACAGATGTGGTAACTTTGTGGTAGAC  900

seq1  GGATCAATCTTCGTTCATGTGCAGCGGGACCCGGGGCGGATCCGCTGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAATCTTCGTTCATGTGCAGCGGGACCCGGGGCGGATCCGCTGCAC  950

seq1  TGGTGCTTTTGCCAGCCCAGGTGAGCCTAGGAGCAGCGGGTTGGGAGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTTTGCCAGCCCAGGTGAGCCTAGGAGCAGCGGGTTGGGAGAAG  1000

seq1  AAAGGTGAATATGCCCTCAACAGCGCTTCCCTGACCTCCTC-TCTGGACA  1049
      ||| |||||||||||||||||||||| |||||||||||||| | ||||||
seq2  AAATGTGAATATGCCCTCAACAGCGC-TCCCTGACCTCCTCTTTTGGACA  1049

seq1  GCTGGGGAATTCATTTATGTGCCAGAGA---CCATCACAC-CCGGGGCC  1094
      ||||||||||||||||||||| || |||   ||||||||| ||||||||
seq2  GCTGGGGAATTCATTTATGTGGCAAAGAGACCCATCACACACCGGGGCC  1098

seq1: chr9_108087397_108088630
seq2: B6Ng01-074F17.g_67_1281 (reverse)

seq1  TCAGATGCATATTCACGCACAGAGACACACAAATGCACATAATTAAAAAT  50
      |||||||||   | ||||||||      ||| |||| |||        ||
seq2  TCAGATGCA---TTACGCACAG------ACACATGC-CAT--------AT  32

seq1  AAATCTTTTTTTTTTAAAGAACAGGC--------TGTATGTTTAGC-TGA  91
      |||   | | |||||| ||| | | |        | | |||| ||| |||
seq2  AAA---TATCTTTTTAGAGACCGGTCGCTTGATATATGTGTTAAGCTTGA  79

seq1  AG-ACAGGGTGCCTGGCCAGCATTTCTGAGGCCCTGGGTTTGATTCCTAG  140
      || ||||| |  |||| ||  |||| ||||| ||| || ||||||| |||
seq2  AGAACAGGTT--CTGG-CACGATTT-TGAGG-CCTTGGATTGATTCATAG  124

seq1  CATACCTTCCCTGGGAGGAAAGAAATACCTACTCAGCTATGATGGTGTCG  190
      |||||| ||| | ||||||||| |||| |||| |||||||||||| ||||
seq2  CATACCCTCCAT-GGAGGAAAG-AATA-CTACCCAGCTATGATGGGGTCG  171

seq1  TCATGGTTACGTTTATTCAGAGCTCATTTCTTGGAAGGATACAGTGAG-A  239
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TCATGGTTACGTTTATTCAGAGCTCATTTCTTGG-AGGATACAGTGAGAA  220

seq1  TGCTGCTGATGGGATGTAGGACTGTTGGAATTTGTCTCAGTGAGAAGGGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGATGGGATGTAGGACTGTTGGAATTTGTCTCAGTGAGAAGGGA  270

seq1  GGTAAAGGAAACGTGATTGGCTGAGTTGAGCGTGCCTGTATCCACGTAAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTAAAGGAAACGTGATTGGCTGAGTTGAGCGTGCCTGTATCCACGTAAA  320

seq1  TGGAACATGAGGCTTTAGTGGACAATCCTCTCTGTTGTTACATATGCTGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATGAGGCTTTAGTGGACAATCCTCTCTGTTGTTACATATGCTGA  370

seq1  AGTGTTCCATAGTCATCGTGTTTTGTTTGTTTGTTTGTTTGTTTGCTCAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCATAGTCATCGTGTTTTGTTTGTTTGTTTGTTTGTTTGCTCAC  420

seq1  TTGCTTGCTTGTTTAAATAGCCTGTCTTCTCCTAATATCTCCACTAGAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCTTGTTTAAATAGCCTGTCTTCTCCTAATATCTCCACTAGAAA  470

seq1  AAAGAATTTTTAACTCAGAGCCAGGCTTGGTCACTCACACCTGTCGTCCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTTTTAACTCAGAGCCAGGCTTGGTCACTCACACCTGTCGTCCC  520

seq1  AGCTCTTGTAAAGCAGAGGCAGGTGGGGCAGCCCTAGTCCAAGTCCACCC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGTAAAGCAGAGGCAGGTGGGGCAGCCCTAGTCCAAGTCCACCC  570

seq1  TGGGTTATGTATGTGGTGAATTCCAGGCTAGCTAGGCTGCAAAATAAGAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTATGTATGTGGTGAATTCCAGGCTAGCTAGGCTGCAAAATAAGAC  620

seq1  TCTGTCTCCAAAATAGAAAAAAAAAAAAAAAAAGCAAGCCACTGACAGCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCCAAAATAGAAAAAAAAAAAAAAAAAGCAAGCCACTGACAGCA  670

seq1  TCCTGACAGCCCCACTGGTGCTGGGGACAATGTCACAAAGCTGCCCTCTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACAGCCCCACTGGTGCTGGGGACAATGTCACAAAGCTGCCCTCTC  720

seq1  CAGGTAAGATTGACAATGTCACTATTCTAAAGGAAGGTCACTTCAATTCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGATTGACAATGTCACTATTCTAAAGGAAGGTCACTTCAATTCA  770

seq1  TACCTGTACTCCCAGAAAACTCAGCCACTGGGGCCAGACAAGGCTTCTAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTACTCCCAGAAAACTCAGCCACTGGGGCCAGACAAGGCTTCTAA  820

seq1  ATGACAAATGACGGTTATTTCCAAATCTGGCAATTCCACCTATCGCTCTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAATGACGGTTATTTCCAAATCTGGCAATTCCACCTATCGCTCTG  870

seq1  CCTTCACAGGTTCACTGTAGACTGCTAGTCCACGGCTATCAGCTAATGCG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAGGTTCACTGTAGACTGCTAGTCCACGGCTATCAGCTAATGCG  920

seq1  GGGGACCTGGATTCAGACACTGTGCCTGATGAATCCGTTTTGAGAAAAGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCTGGATTCAGACACTGTGCCTGATGAATCCGTTTTGAGAAAAGA  970

seq1  ACTCCACGTGGTTCGTGGGCACTCTCACCTTCCAGCAAATGATAAGGGTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACGTGGTTCGTGGGCACTCTCACCTTCCAGCAAATGATAAGGGTT  1020

seq1  CCTGTCATGTTTGCCTCAAGACTTCTCCATGTCGTATGAACTAAAAGGGA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATGTTTGCCTCAAGACTTCTCCATGTCGTATGAACTAAAAGGGA  1070

seq1  ACTGTGGCTTTTGATGGGCATTTAGAGAGAGATGTCTCAGCTGGCTTGTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCTTTTGATGGGCATTTAGAGAGAGATGTCTCAGCTGGCTTGTC  1120

seq1  CCTGTCTCTCTCCGAGTCTCTTGCATTCAGTCTCTTTGCTCACTGTCTCT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTCTCCGAGTCTCTTGCATTCAGTCTCTTTGCTCACTGTCTCT  1170

seq1  GCCAAGGTAGACCACATTCCTCTTCCCGCCCCTACCCCTGAATTC  1234
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTAGACCACATTCCTCTTCCCGCCCCTACCCCTGAATTC  1215