BAC Information

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BAC

Clone NameB6Ng01-074I16
Chromosome9 (Build37)
Map Location 71,680,575 - 71,826,236
singlet/doubletdoublet
Overlap geneTcf12
Upstream geneLipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneEG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074I16.bB6Ng01-074I16.g
ACCDH891359DH891360
length1,1361,117
definitionDH891359|Mus musculus domesticus DNA, BAC clone: B6Ng01-074I16, 5' end.DH891360|Mus musculus domesticus DNA, BAC clone: B6Ng01-074I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,680,575 - 71,681,715)(71,825,118 - 71,826,236)
sequence
gaattcaaactggactcctcaccagtccagaggtctctgcggctttgcat
gcctttctgtgagaacctttgatgggctccggccttgggtctgcagagct
tccttctctccctgagggccatagggaggaacctgaacctacaggcaccg
ggctggcccacactgagcccctctcagcgacctgaggttgtccctggaca
cagaaacacaagtattaataactgtgcatcacgtgggacagagtttaata
aatggctcatgccaagagttcagacctctcaaggggttttctggtggcct
ggattctgacgttagccttcactgggtggcttctatctcatccatcaccc
ccatttcatagatgagaaacttacagattttccagttactggtgtgagtg
ctctcacctggaacaactgctgtttagttcccttgcccagtgtggactga
gtaaaggtactctgtcgccgagggagggcaggatagccagatccgaccct
tcacttgtggagcaggttgtaccaggctgtagtggcaggtcacctctctt
tcattcatactcacagcccatgagacaccagcccaggagcccaggctgac
ctggaattcacttgtaactgaggatgatcttgaatttctgatggctctac
cccttcctctttttttaaaaaaatctttttaaataaagatttattattta
ttttatgtatctgagtacaccattgctctcttcagacacaccagaagaag
ggcatcagctcccattacagatggttgtgagtcaccatgtggttgctggg
aattgaactcaggacctctgggagaacagtcagtgctcttaacgactgag
ccatctctccagccccctacccctccctcttgagtgatgaaattatgggt
gcataccatcacccctggttttatgtggcactggggatggaagccagggt
ttctgttttgctagacagcactctaccaactgaactcttgacattcattc
attttaatagtagtttttggttgctgtatgagcataggcacgagaagagg
ggtggtttaaagccagcttagcaagcatggtgatcaatgtgggctggaat
gtttctgggcatatatatgggattgggatgctgtag
gaattcatttacctcctcatgaaaagaacccctgagcatccatccttggt
gcctgctgttaacaacacacacatatcagaacgccccttgccacactttg
gaattggcatatctccttgtcaagcatgtcctgaatacttgaaaaataac
tagacagtgttttagtgctttttagctgtgtcaggctgcagaggaggacc
atgaattaggacaaatgctaacattctttctagttactggttttatctag
cttgataaaagctacataactacaggctgtccttgtcttcctgctgtttg
gcttacaatttttactttataaggtttagtatgcgttcagggaaacggtt
ctgagttttgattttgatgttttcctaggctagtagcatatcattaacat
tatcctggtgaagttgaacagaggtggcaagctgtaaacacatcacctta
acaataacttaagggtaatttgccactaagatttttttgttaatagaaaa
tactgtcagatatacctttattataaaataggctttgcactagattttgt
ccaatgatgggctataatgtaatgtgagtgatttaaggtagacaagctaa
aatatgatgtttagtagcctcgatgttggaatgcatttttatctagtaat
acttttatttatagtggttttgccagaatataaagtcgtaatcaggagcg
tctctaacagttaggacttgacataaaatctttaagtaaactgtctgaag
ttttgtatccttttctagtctaagatatctctatttggagaaaagttaat
ttttctttttaaagttgaatggtagatagtaatttaccagcaagattatt
ttttcagttgtctctttgtgaagtaatcaacattgtattttttctttgtc
taatcaccagactcctttctctgttaaatatattttatttatgcatacat
ttttttcttttggtctgtagaatatattacactagtagccttatgtggat
aaaatatggtattcattttctgtagaaaagtaaattcatgtatatttaga
tccaatctaaatataaataatttttgtttcttattggactaccttacagg
atacaaaaatggtatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_71680575_71681715
seq2: B6Ng01-074I16.b_50_1185

seq1  GAATTCAAACTGGACTCCTCACCAGTCCAGAGGTCTCTGCGGCTTTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGGACTCCTCACCAGTCCAGAGGTCTCTGCGGCTTTGCAT  50

seq1  GCCTTTCTGTGAGAACCTTTGATGGGCTCCGGCCTTGGGTCTGCAGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTGTGAGAACCTTTGATGGGCTCCGGCCTTGGGTCTGCAGAGCT  100

seq1  TCCTTCTCTCCCTGAGGGCCATAGGGAGGAACCTGAACCTACAGGCACCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTCCCTGAGGGCCATAGGGAGGAACCTGAACCTACAGGCACCG  150

seq1  GGCTGGCCCACACTGAGCCCCTCTCAGCGACCTGAGGTTGTCCCTGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCCACACTGAGCCCCTCTCAGCGACCTGAGGTTGTCCCTGGACA  200

seq1  CAGAAACACAAGTATTAATAACTGTGCATCACGTGGGACAGAGTTTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACAAGTATTAATAACTGTGCATCACGTGGGACAGAGTTTAATA  250

seq1  AATGGCTCATGCCAAGAGTTCAGACCTCTCAAGGGGTTTTCTGGTGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTCATGCCAAGAGTTCAGACCTCTCAAGGGGTTTTCTGGTGGCCT  300

seq1  GGATTCTGACGTTAGCCTTCACTGGGTGGCTTCTATCTCATCCATCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGACGTTAGCCTTCACTGGGTGGCTTCTATCTCATCCATCACCC  350

seq1  CCATTTCATAGATGAGAAACTTACAGATTTTCCAGTTACTGGTGTGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCATAGATGAGAAACTTACAGATTTTCCAGTTACTGGTGTGAGTG  400

seq1  CTCTCACCTGGAACAACTGCTGTTTAGTTCCCTTGCCCAGTGTGGACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCTGGAACAACTGCTGTTTAGTTCCCTTGCCCAGTGTGGACTGA  450

seq1  GTAAAGGTACTCTGTCGCCGAGGGAGGGCAGGATAGCCAGATCCGACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGTACTCTGTCGCCGAGGGAGGGCAGGATAGCCAGATCCGACCCT  500

seq1  TCACTTGTGGAGCAGGTTGTACCAGGCTGTAGTGGCAGGTCACCTCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTGGAGCAGGTTGTACCAGGCTGTAGTGGCAGGTCACCTCTCTT  550

seq1  TCATTCATACTCACAGCCCATGAGACACCAGCCCAGGAGCCCAGGCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATACTCACAGCCCATGAGACACCAGCCCAGGAGCCCAGGCTGAC  600

seq1  CTGGAATTCACTTGTAACTGAGGATGATCTTGAATTTCTGATGGCTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTCACTTGTAACTGAGGATGATCTTGAATTTCTGATGGCTCTAC  650

seq1  CCCTTCCTCTTTTTTTAAAAAAATCTTTTTAAATAAAGATTTATTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTTTTTTTAAAAAAATCTTTTTAAATAAAGATTTATTATTTA  700

seq1  TTTTATGTATCTGAGTACACCATTGCTCTCTTCAGACACACCAGAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTATCTGAGTACACCATTGCTCTCTTCAGACACACCAGAAGAAG  750

seq1  GGCATCAGCTCCCATTACAGATGGTTGTGAGTCACCATGTGGTTGCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGCTCCCATTACAGATGGTTGTGAGTCACCATGTGGTTGCTGGG  800

seq1  AATTGAACTCAGGACCTCTGGGAGAACAGTCAGTGCTCTTAACGACTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTCAGGACCTCTGGGAGAACAGTCAGTGCTCTTAACGACTGAG  850

seq1  CCATCTCTCCAGCCCCCTACCCCTCCCTCTTGAGTGATGAAATTATGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCAGCCCCCTACCCCTCCCTCTTGAGTGATGAAATTATGGGT  900

seq1  GCATACCATCACCCCTGGTTTTATGTGGCACTGGGGATGGAAGCCAGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCATCACCCCTGGTTTTATGTGGCACTGGGGATGGAAGCCAGGGT  950

seq1  TTCTGTTTTGCTAGACAAGCACTCTACCAACTGAACTCTTGACATTCATT  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTGCTAGAC-AGCACTCTACCAACTGAACTCTTGACATTCATT  999

seq1  CATTTTAATAGTAGTTTTTGGTTGCTGTATTGAGCATAGGCAACGAGGAA  1050
      ||||||||||||||||||||||||||||| ||||||||||| |||| |||
seq2  CATTTTAATAGTAGTTTTTGGTTGCTGTA-TGAGCATAGGC-ACGA-GAA  1046

seq1  GA-GGGTGG-TTAAAGCCAGCTTAGCAAAGCAATGTGATCAAATGTTGGG  1098
      || |||||| |||||||||||||||| |||||  |||||| |||| ||||
seq2  GAGGGGTGGTTTAAAGCCAGCTTAGC-AAGCATGGTGATC-AATG-TGGG  1093

seq1  CTGG-ATGTTTCTGGGGCATAT-TATGGGATGGTGATGGCTGTAG  1141
      |||| |||||||| |||||||| |||||||| | ||| |||||||
seq2  CTGGAATGTTTCT-GGGCATATATATGGGATTGGGAT-GCTGTAG  1136

seq1: chr9_71825118_71826236
seq2: B6Ng01-074I16.g_69_1185 (reverse)

seq1  TCATACATATTTTGTATCCTGTAAAGGTAGTCC-ATAAGAAACAAAATTA  49
      ||||||   ||||||||||||| |||||||||| ||||||||||||| | 
seq2  TCATACCATTTTTGTATCCTGT-AAGGTAGTCCAATAAGAAACAAAAATT  49

seq1  ATTTATATTTTAGATTTGGATTCTAAATATACATGAATTTACTTTCTTAC  99
      ||||||| |||||| ||||| ||||||||||||||||||||||||  |||
seq2  ATTTATA-TTTAGA-TTGGA-TCTAAATATACATGAATTTACTTTTCTAC  96

seq1  AG-AAATGAATACCATATTTTATCCACATAAGGCTACTAGTGGTAATATA  148
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAAAATGAATACCATATTTTATCCACATAAGGCTACTAGT-GTAATATA  145

seq1  TTCTACAGACCAAAAGAAAAAAATGTATGCATAAAATAAAATATATTTAA  198
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCTACAGACCAAAAGAAAAAAATGTATGCAT-AAATAAAATATATTTAA  194

seq1  CAGAGAAAGGAGTCTGGTGATTAGACAAAG-AAAAATACAATGTTGATTA  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGAGAAAGGAGTCTGGTGATTAGACAAAGAAAAAATACAATGTTGATTA  244

seq1  CTTCACAAAGAGACAACTGAAAAAATAATCTTGCTGGTAAATTACTATCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAAAGAGACAACTGAAAAAATAATCTTGCTGGTAAATTACTATCT  294

seq1  ACCATTCAACTTTAAAAAGAAAAATTAACTTTTCTCCAAATAGAGATATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCAACTTTAAAAAGAAAAATTAACTTTTCTCCAAATAGAGATATC  344

seq1  TTAGACTAGAAAAGGATACAAAACTTCAGACAGTTTACTT-AAGATTTTA  396
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTAGACTAGAAAAGGATACAAAACTTCAGACAGTTTACTTAAAGATTTTA  394

seq1  TGTCAAGTCCTAACTGTTAGAGACGCTCCTGATTACGACTTTATATTCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGTCCTAACTGTTAGAGACGCTCCTGATTACGACTTTATATTCTG  444

seq1  GCAAAACCACTATAAATAAAAGTATTACTAGATAAAAATGCATTCCAACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCACTATAAATAAAAGTATTACTAGATAAAAATGCATTCCAACA  494

seq1  TCGAGGCTACTAAACATCATATTTTAGCTTGTCTACCTTAAATCACTCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCTACTAAACATCATATTTTAGCTTGTCTACCTTAAATCACTCAC  544

seq1  ATTACATTATAGCCCATCATTGGACAAAATCTAGTGCAAAGCCTATTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTATAGCCCATCATTGGACAAAATCTAGTGCAAAGCCTATTTTA  594

seq1  TAATAAAGGTATATCTGACAGTATTTTCTATTAACAAAAAAATCTTAGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGGTATATCTGACAGTATTTTCTATTAACAAAAAAATCTTAGTG  644

seq1  GCAAATTACCCTTAAGTTATTGTTAAGGTGATGTGTTTACAGCTTGCCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTACCCTTAAGTTATTGTTAAGGTGATGTGTTTACAGCTTGCCAC  694

seq1  CTCTGTTCAACTTCACCAGGATAATGTTAATGATATGCTACTAGCCTAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCAACTTCACCAGGATAATGTTAATGATATGCTACTAGCCTAGG  744

seq1  AAAACATCAAAATCAAAACTCAGAACCGTTTCCCTGAACGCATACTAAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCAAAATCAAAACTCAGAACCGTTTCCCTGAACGCATACTAAAC  794

seq1  CTTATAAAGTAAAAATTGTAAGCCAAACAGCAGGAAGACAAGGACAGCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAGTAAAAATTGTAAGCCAAACAGCAGGAAGACAAGGACAGCCT  844

seq1  GTAGTTATGTAGCTTTTATCAAGCTAGATAAAACCAGTAACTAGAAAGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATGTAGCTTTTATCAAGCTAGATAAAACCAGTAACTAGAAAGAA  894

seq1  TGTTAGCATTTGTCCTAATTCATGGTCCTCCTCTGCAGCCTGACACAGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCATTTGTCCTAATTCATGGTCCTCCTCTGCAGCCTGACACAGCT  944

seq1  AAAAAGCACTAAAACACTGTCTAGTTATTTTTCAAGTATTCAGGACATGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCACTAAAACACTGTCTAGTTATTTTTCAAGTATTCAGGACATGC  994

seq1  TTGACAAGGAGATATGCCAATTCCAAAGTGTGGCAAGGGGCGTTCTGATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGGAGATATGCCAATTCCAAAGTGTGGCAAGGGGCGTTCTGATA  1044

seq1  TGTGTGTGTTGTTAACAGCAGGCACCAAGGATGGATGCTCAGGGGTTCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTTGTTAACAGCAGGCACCAAGGATGGATGCTCAGGGGTTCTT  1094

seq1  TTCATGAGGAGGTAAATGAATTC  1119
      |||||||||||||||||||||||
seq2  TTCATGAGGAGGTAAATGAATTC  1117