BAC Information

Click to search

BAC

Clone NameB6Ng01-074M03
Chromosome9 (Build37)
Map Location 8,938,536 - 8,939,164
singlet/doubletsinglet
Overlap genePgr
Upstream geneYap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
Downstream gene9030420J04Rik, Cntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074M03.bB6Ng01-074M03.g
ACCDH891514DH891515
length1,221652
definitionDH891514|Mus musculus domesticus DNA, BAC clone: B6Ng01-074M03, 5' end.DH891515|Mus musculus domesticus DNA, BAC clone: B6Ng01-074M03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacgcatcttgaccctttgctgacgaaggacttctccacctgga
tttcctctgcattttcctactttaaggagtgggtgggggtaggcttgttt
gccgtgatcctatgcagtggagcattgcttttgctctggatggtctgtaa
acttaaagcccaaacaaaaagggacaagatggtgatagcccaagcacttg
cagcattagaacacagtacctcccctgatatatggttatctattcttaag
caataggtcgctggccgctcagttcttgcaccccacgaggctagtctcat
tgcatgggatagagtgagtgtgcttcagtagcccgagagagttgcacgac
taagtatagcagtagaaaggctctgcggcataaaatgagcctattctaga
gagacatgtcatcttgtatgaaggttgagtgtccaagtgtccttccccca
ggaaaaacgacaagggagcggaccaagacccctccggtgacgagcctggg
agaaggttttgtgtaatgcccctatttttgcacactggggatttgacctc
tatctccactctcagtactgggtggcctgttgccttttaaataaaagaaa
agggagagatgtgaggagccacccttgcaatcgccattacaagatggcgc
tgatatctggtgttctaactggtaaacaaatagtctgcgcatgtgctggg
gtatttttccattccttgtgccctgcctgtcccgtggcatcatctgggct
gatagtgagctgccagtcagagtgaaatacctctccaacccctcttgtgg
tctatttaaggactgagttttctgtgttctgggcctcctcccccagaagc
taaacatctctctctcaagatgcattaaagctatgctgcagaaggatctg
agtgtgtcctgtgtgtgtgtcctcgctggcgagactccatatcacatagg
aacaattgaagatcagccttagtccatggtgatctgataggcttcatggg
acatttcatatttttgtatgtgttaaggctgtttgcgaccattgatagga
tcaatttttgagagtacaatggaagggatgaagaaggaggattatctttt
tagataaatgttctgtagatggttgttaaatcattggttcatacctcgta
gttccaggactgctagtttcgttcagattgccaatgtgaaggggtggtga
gagtccctcccccaatcatta
gaattcagcttccgaccagactctagcagcaactagtgtcctgataccac
ttggtccctcattttcatgttaggactcacctacaatttccagtcccaaa
aatgtgacgacataaattcaaagaaaataaacatgtcagtgtaatcattt
atacaattatttaagagttgagttacaaatatacatcttctctcaatcac
tcaatgtcacttgaaaaatttaaacttgaacccctgtatctctactcaat
atggacctgaagaatgaacaattctggtagatactccacacagttctctg
gctcacatgtgtgagatgctatgtagcagacacacctagacagtgatcag
aagacatcttgagactgcagaattcagggaagtggatagggagtaaggtg
tggtggtttcctactgaaatgctggctcaaagcatataaaaggatttctc
tgtgaggggaagatggggtgaagtccagagaaataggacgtagtcatcat
ccacagcaacttgcattaagaagggaactgtagcttcaaggtttctccct
cctccccctcctcctctcctccaccctcctcctccttcctttcttcttct
tcttcttcttcttcttgtcgtcttcgtcgtcgtcgtcgtcttcttcttct
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_8938536_8939164
seq2: B6Ng01-074M03.g_66_717 (reverse)

seq1  GAAGAAGAAGAAG-----------------------AAGAAGAAGAAGAA  27
      |||||||||||||                       ||||||||||||||
seq2  GAAGAAGAAGAAGACGACGACGACGACGAAGACGACAAGAAGAAGAAGAA  50

seq1  GAAGAAGAAGAAAGGAAGGAGGAGGAGGGTGGAGGAGAGGAGGAGGGGGA  77
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAAGGAAGGAGGAGGAGGGTGGAGGAGAGGAGGAGGGGGA  100

seq1  GGAGGGAGAAACCTTGAAGCTACAGTTCCCTTCTTAATGCAAGTTGCTGT  127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGAAACCTTGAAGCTACAGTTCCCTTCTTAATGCAAGTTGCTGT  150

seq1  GGATGATGACTACGTCCTATTTCTCTGGACTTCACCCCATCTTCCCCTCA  177
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGACTACGTCCTATTTCTCTGGACTTCACCCCATCTTCCCCTCA  200

seq1  CAGAGAAATCCTTTTATATGCTTTGAGCCAGCATTTCAGTAGGAAACCAC  227
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATCCTTTTATATGCTTTGAGCCAGCATTTCAGTAGGAAACCAC  250

seq1  CACACCTTACTCCCTATCCACTTCCCTGAATTCTGCAGTCTCAAGATGTC  277
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTACTCCCTATCCACTTCCCTGAATTCTGCAGTCTCAAGATGTC  300

seq1  TTCTGATCACTGTCTAGGTGTGTCTGCTACATAGCATCTCACACATGTGA  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCACTGTCTAGGTGTGTCTGCTACATAGCATCTCACACATGTGA  350

seq1  GCCAGAGAACTGTGTGGAGTATCTACCAGAATTGTTCATTCTTCAGGTCC  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAACTGTGTGGAGTATCTACCAGAATTGTTCATTCTTCAGGTCC  400

seq1  ATATTGAGTAGAGATACAGGGGTTCAAGTTTAAATTTTTCAAGTGACATT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGTAGAGATACAGGGGTTCAAGTTTAAATTTTTCAAGTGACATT  450

seq1  GAGTGATTGAGAGAAGATGTATATTTGTAACTCAACTCTTAAATAATTGT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATTGAGAGAAGATGTATATTTGTAACTCAACTCTTAAATAATTGT  500

seq1  ATAAATGATTACACTGACATGTTTATTTTCTTTGAATTTATGTCGTCACA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATTACACTGACATGTTTATTTTCTTTGAATTTATGTCGTCACA  550

seq1  TTTTTGGGACTGGAAATTGTAGGTGAGTCCTAACATGAAAATGAGGGACC  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGACTGGAAATTGTAGGTGAGTCCTAACATGAAAATGAGGGACC  600

seq1  AAGTGGTATCAGGACACTAGTTGCTGCTAGAGTCTGGTCGGAAGCTGAAT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTATCAGGACACTAGTTGCTGCTAGAGTCTGGTCGGAAGCTGAAT  650

seq1  TC  629
      ||
seq2  TC  652