BAC Information

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BAC

Clone NameB6Ng01-075E16
Chromosome5 (Build37)9 (Build37)
Map Location 82,407,910 - 82,409,0975,944,390 - 5,944,505
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075E16.bB6Ng01-075E16.g
ACCDH891889DH891890
length1,158400
definitionDH891889|Mus musculus domesticus DNA, BAC clone: B6Ng01-075E16, 5' end.DH891890|Mus musculus domesticus DNA, BAC clone: B6Ng01-075E16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,407,910 - 82,409,097)(5,944,390 - 5,944,505)
sequence
gaattcattatatgtaacaagctttcattttaaaaacatgttcaaaagag
acaaagataaggtgttaaaatgtttgaattaaagaatttgtgtaaaaatt
atttcaacagaagtatagaagaagaaacagaatgcgtccattgtttggtt
gatatttaaatagagttggttttgggtgcagtgctaaagtttactttcaa
cagaaagatgcttttccattcctttaataatagagaagacagacctcaaa
taaataattcttgcttcaagaaataaataatttccccagctggaaggagt
gcccagtctggaacatgttcaaagagaatgtatctagggtagtgatcaac
aaaggccttgaagtatccttagctagaacaaagcaattatttaagttaag
aaaaaatcttcataaacctttctaaaagataaccaggtatggctcctgaa
agagaaagaactatttctgtgatataatacctatttatagcacaaataat
cataacaaagttaagcaggaaactagttgccaccaaatcaatttcctcat
atacatttcaggattggctctggggcagagaggagatatttcatctctct
aatggcacacacatattattagaattcaaactaatcattccatattcatt
tctaaagacaagatatctcttttggacacagtcattttatcataattgat
ccttcctgggatcaatagctccagtaaggtaacatttgtttaagtaaggt
cagaccttttaaagatccatgcatatgcaattggatttaaaggtgatttt
cttttccaaaaggtaatgattcctaagaaactgagaacattttacattgt
tgaaattaaatatgcacccagtaggcacacgacaagcaatagagactgat
gacatcagacttctcatggatatcagcaaagtaatatacattaatctgat
acactgttaaattataggaacgagacctgagaggtataaaatagatgata
aagcttaaatacttttcatatgttctcagacatcgctatagatgtgcttg
gtggggagttacgcttatattatcaatattttcacctcacagcaaatctg
taatctatgattgagttaacatattctaaaaagctgtttgaagtcattat
actaggca
aaaatgctcaacaagctgaagtgcctaagtaaggatatctcagtcccatt
tgtgagagaaaagaaagcatttataattagagagggagagagggacttgg
aagggaaagtggatggggagggggaaacctggtctgttattggggaaggg
aaaaggactgaagacctgaaggcctgcagaataggaggaatatcaatatg
aactaaccagtacctccagagttccttggtactataccaccaatcaaaga
aaatacatggtggaacttatggctctagttatatatgtagcagaggatgg
cctagctggtcatcaatgggagaagaggcccttggtcctgtgaaggttct
atgcctcagtataggggaatgccaggaccaggaatgggagtgggtgggtt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82407910_82409097
seq2: B6Ng01-075E16.b_47_1204 (reverse)

seq1  TGCCTATGTAAATAATTGACTTTTCAAAACAGCCTTATTTTTAGAATATG  50
      |||||| ||  |||| ||||||    |||||||    |||||||||||||
seq2  TGCCTA-GT--ATAA-TGACTT---CAAACAGC----TTTTTAGAATATG  39

seq1  TTAAACTTAAAATCAATAGATATTACAGAATTTTGCTGTGAGGTGAAAAT  100
      || ||||   |||| ||||  ||||||||  |||||||||||||||||||
seq2  TT-AACT--CAATC-ATAG--ATTACAGA--TTTGCTGTGAGGTGAAAAT  81

seq1  ATTGATAATATAAGCGTAACTTCCCCCACCAAGCAACAATCTAATAGCGA  150
      |||||||||||||||||||||  ||||||||||||   |||| |||||||
seq2  ATTGATAATATAAGCGTAACT--CCCCACCAAGCA--CATCT-ATAGCGA  126

seq1  TTGTCTTGAGGAACATATGAAAAAGTATTTAAGCTTTATCATCTATTTTA  200
       |||| ||| ||||||||| ||||||||||||||||||||||||||||||
seq2  -TGTC-TGA-GAACATATG-AAAAGTATTTAAGCTTTATCATCTATTTTA  172

seq1  TTACCTCTCAGGTCTCGTTCCTATAATTTTAACAGTGTATCAGATTAATG  250
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -TACCTCTCAGGTCTCGTTCCTATAA-TTTAACAGTGTATCAGATTAATG  220

seq1  TATATTACTTTGCTGATATCCATGAGAAGTCTGATGTCATCAGTCTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACTTTGCTGATATCCATGAGAAGTCTGATGTCATCAGTCTCTAT  270

seq1  TGCTTGTCGTGTGCCTACTGGGTGCATATTTAATTTCAACAATGTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCGTGTGCCTACTGGGTGCATATTTAATTTCAACAATGTAAAAT  320

seq1  GTTCTCAGTTTCTTAGGAATCATTACCTTTTGGAAAAGAAAATCACCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGTTTCTTAGGAATCATTACCTTTTGGAAAAGAAAATCACCTTT  370

seq1  AAATCCAATTGCATATGCATGGATCTTTAAAAGGTCTGACCTTACTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAATTGCATATGCATGGATCTTTAAAAGGTCTGACCTTACTTAAA  420

seq1  CAAATGTTACCTTACTGGAGCTATTGATCCCAGGAAGGATCAATTATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTACCTTACTGGAGCTATTGATCCCAGGAAGGATCAATTATGAT  470

seq1  AAAATGACTGTGTCCAAAAGAGATATCTTGTCTTTAGAAATGAATATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTGTGTCCAAAAGAGATATCTTGTCTTTAGAAATGAATATGGA  520

seq1  ATGATTAGTTTGAATTCTAATAATATGTGTGTGCCATTAGAGAGATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAGTTTGAATTCTAATAATATGTGTGTGCCATTAGAGAGATGAAA  570

seq1  TATCTCCTCTCTGCCCCAGAGCCAATCCTGAAATGTATATGAGGAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTCTCTGCCCCAGAGCCAATCCTGAAATGTATATGAGGAAATTG  620

seq1  ATTTGGTGGCAACTAGTTTCCTGCTTAACTTTGTTATGATTATTTGTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTGGCAACTAGTTTCCTGCTTAACTTTGTTATGATTATTTGTGCT  670

seq1  ATAAATAGGTATTATATCACAGAAATAGTTCTTTCTCTTTCAGGAGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGGTATTATATCACAGAAATAGTTCTTTCTCTTTCAGGAGCCAT  720

seq1  ACCTGGTTATCTTTTAGAAAGGTTTATGAAGATTTTTTCTTAACTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTATCTTTTAGAAAGGTTTATGAAGATTTTTTCTTAACTTAAAT  770

seq1  AATTGCTTTGTTCTAGCTAAGGATACTTCAAGGCCTTTGTTGATCACTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTTGTTCTAGCTAAGGATACTTCAAGGCCTTTGTTGATCACTAC  820

seq1  CCTAGATACATTCTCTTTGAACATGTTCCAGACTGGGCACTCCTTCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATACATTCTCTTTGAACATGTTCCAGACTGGGCACTCCTTCCAGC  870

seq1  TGGGGAAATTATTTATTTCTTGAAGCAAGAATTATTTATTTGAGGTCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAATTATTTATTTCTTGAAGCAAGAATTATTTATTTGAGGTCTGT  920

seq1  CTTCTCTATTATTAAAGGAATGGAAAAGCATCTTTCTGTTGAAAGTAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTATTATTAAAGGAATGGAAAAGCATCTTTCTGTTGAAAGTAAAC  970

seq1  TTTAGCACTGCACCCAAAACCAACTCTATTTAAATATCAACCAAACAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCACTGCACCCAAAACCAACTCTATTTAAATATCAACCAAACAATG  1020

seq1  GACGCATTCTGTTTCTTCTTCTATACTTCTGTTGAAATAATTTTTACACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCATTCTGTTTCTTCTTCTATACTTCTGTTGAAATAATTTTTACACA  1070

seq1  AATTCTTTAATTCAAACATTTTAACACCTTATCTTTGTCTCTTTTGAACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTAATTCAAACATTTTAACACCTTATCTTTGTCTCTTTTGAACA  1120

seq1  TGTTTTTAAAATGAAAGCTTGTTACATATAATGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAAATGAAAGCTTGTTACATATAATGAATTC  1158

seq1: chr9_5944390_5944505
seq2: B6Ng01-075E16.g_359_473 (reverse)

seq1  AACCCACCCACTCCCACTTCCTGGCCCTGACATTGCCCTATACTGGGGCA  50
      |||||||||||||||| ||||||| |||| |||| |||||||||| ||||
seq2  AACCCACCCACTCCCA-TTCCTGGTCCTGGCATTCCCCTATACTGAGGCA  49

seq1  TAGAACCTTCCCAAGACCAAGGGCCTCTCCTCCCATTGATGACCAACTAG  100
      |||||||||| || |||||||||||||| |||||||||||||||| ||||
seq2  TAGAACCTTCACAGGACCAAGGGCCTCTTCTCCCATTGATGACCAGCTAG  99

seq1  GCCATCCTCTGCTACA  116
      ||||||||||||||||
seq2  GCCATCCTCTGCTACA  115