BAC Information

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BAC

Clone NameB6Ng01-076D11
Chromosome9 (Build37)
Map Location 109,784,766 - 109,944,634
singlet/doubletdoublet
Overlap geneCdc25a, LOC100043782, Mtap4, LOC100049540
Upstream geneLOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp
Downstream geneDhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076D11.bB6Ng01-076D11.g
ACCDH892546DH892547
length906939
definitionDH892546|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D11, 5' end.DH892547|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,784,766 - 109,785,672)(109,943,687 - 109,944,634)
sequence
gaattctttttgctcctgcctgtaggatcacaagtgtttgccactacacc
aaattcgttttcaaggtagggcattgcatagatgaggtgtatgatcttgg
taccccttaagcatcagtttcaagaaacaaaaagcaaaagattatttggc
tatgtcgacacacgtagtcccagctacacctgggactgagatagaatgaa
cactgggaacacttagtcacaatgaagaaaaaagagattgactaccagaa
gcgagtggtgtgccttaaatgggactatagttgtaaagattttgttgctg
tctaggacatcataatccctcatttaaatactgggcagctgtcattttag
tttaaatcactttttttaattttgtggagcggggtggtatgcacacatgc
atatagctgccctaggaggccagggccttaggatcatgtgaagctggaac
tacaggcagctgtgagctgtctgatggagatactggaaattaaactcaaa
gtttctccaagagcagtatttgctcttacccatggagccatccttccagc
accagcttctttagtcctaatggagagctaggttagaggccaaacttggt
agtgtgcacctgtgatctcaacatttgggaagtggaagaaagaggttcac
aggttttatctcatccttgactgtcctgtctcctgaaataaaaagaaagg
aatatggtagagtttagaacaaactccccttgtttccatttgtctggagt
tacttgggctttcttgaactttctctgatccgctattttgtgatccataa
acacttgttttttctttttctttttttttggttttggttttcgagacagg
gtttctctgtatagcccctggctgtctggaactcactttgtagaccaggc
tggtct
gaattcagagatgcagcaatgaattttacttagtcctcattacactcacc
tcaggtcacgtctcacatgtcctttgcaaggacattccctagtacataca
cactgagctggggctgacctggcagggtccagagagctctgcaggttctg
actaaaaataaacctactttctagaattctttgcaaacactaaacatttc
tttggaaatcctgacaagggacttacaaaatttacctgttaccttttttt
ttttttttttttttttgatttatttatttattatatacactgtagctgtc
ctcagatactccagaagagggcatcagattttgttacagatagttgtgag
ccactatgtggctgctgggatttgaactcgggaccttcagaagagcagtc
ggcgctcttaaccactgagccatctcaccagcccctgcctgttacctttt
aatcactgtcaaaactaaataatatgggaggattctggaatgctttctac
atgctacttattctattaaatttcccaaattgttaatagaggagctgaga
agaaaaaagcagaaagatgaaaatagcatatgcatcctttcctcacacca
caggtattccactccaggtgctcactcatgcatagcaccagcttccccca
cgagggcaagtccacaccatgcagagcacagcccgacgatgaagccacat
tgcttggctctaaacgaccagtgtttttgttttgtttactttctcaaggt
agtagctggatcatgcaacttgttaaagaaccatttgctggctgcaaaaa
ttttcaatgcaggaaagaatttcaaagtttggttcaaggaaggtatgact
aaatgtgttgggggagggggagactcccactgattatccttaatcttatg
agaaattcatcttaaactccgttcaactttgaacctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109784766_109785672
seq2: B6Ng01-076D11.b_45_950

seq1  GAATTCTTTTTGCTCCTGCCTGTAGGATCACAAGTGTTTGCCACTACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGCTCCTGCCTGTAGGATCACAAGTGTTTGCCACTACACC  50

seq1  AAATTCGTTTTCAAGGTAGGGCATTGCATAGATGAGGTGTATGATCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCGTTTTCAAGGTAGGGCATTGCATAGATGAGGTGTATGATCTTGG  100

seq1  TACCCCTTAAGCATCAGTTTCAAGAAACAAAAAGCAAAAGATTATTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTTAAGCATCAGTTTCAAGAAACAAAAAGCAAAAGATTATTTGGC  150

seq1  TATGTCGACACACGTAGTCCCAGCTACACCTGGGACTGAGATAGAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCGACACACGTAGTCCCAGCTACACCTGGGACTGAGATAGAATGAA  200

seq1  CACTGGGAACACTTAGTCACAATGAAGAAAAAAGAGATTGACTACCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAACACTTAGTCACAATGAAGAAAAAAGAGATTGACTACCAGAA  250

seq1  GCGAGTGGTGTGCCTTAAATGGGACTATAGTTGTAAAGATTTTGTTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTGGTGTGCCTTAAATGGGACTATAGTTGTAAAGATTTTGTTGCTG  300

seq1  TCTAGGACATCATAATCCCTCATTTAAATACTGGGCAGCTGTCATTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACATCATAATCCCTCATTTAAATACTGGGCAGCTGTCATTTTAG  350

seq1  TTTAAATCACTTTTTTTAATTTTGTGGAGCGGGGTGGTATGCACACATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCACTTTTTTTAATTTTGTGGAGCGGGGTGGTATGCACACATGC  400

seq1  ATATAGCTGCCCTAGGAGGCCAGGGCCTTAGGATCATGTGAAGCTGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTGCCCTAGGAGGCCAGGGCCTTAGGATCATGTGAAGCTGGAAC  450

seq1  TACAGGCAGCTGTGAGCTGTCTGATGGAGATACTGGAAATTAAACTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCAGCTGTGAGCTGTCTGATGGAGATACTGGAAATTAAACTCAAA  500

seq1  GTTTCTCCAAGAGCAGTATTTGCTCTTACCCATGGAGCCATCCTTCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCAAGAGCAGTATTTGCTCTTACCCATGGAGCCATCCTTCCAGC  550

seq1  ACCAGCTTCTTTAGTCCTAATGGAGAGCTAGGTTAGAGGCCAAACTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTTCTTTAGTCCTAATGGAGAGCTAGGTTAGAGGCCAAACTTGGT  600

seq1  AGTGTGCACCTGTGATCTCAACATTTGGGAAGTGGAAGAAAGAGGTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCACCTGTGATCTCAACATTTGGGAAGTGGAAGAAAGAGGTTCAC  650

seq1  AGGTTTTATCTCATCCTTGACTGTCCTGTCTCCTGAAATAAAAAGAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTATCTCATCCTTGACTGTCCTGTCTCCTGAAATAAAAAGAAAGG  700

seq1  AATATGGTAGAGTTTAGAACAAACTCCCCTTGTTTCCATTTGTCTGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGTAGAGTTTAGAACAAACTCCCCTTGTTTCCATTTGTCTGGAGT  750

seq1  TACTTGGGCTTTCTTGAACTTTCTCTGATCCGCTATTTTGTGATCCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGCTTTCTTGAACTTTCTCTGATCCGCTATTTTGTGATCCATAA  800

seq1  ACACTTGTTTTTTCTTTTTCTTTTTTTTTGGTTTTGGTTTTTCGAGACAG  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACACTTGTTTTTTCTTTTTCTTTTTTTTTGGTTTTGG-TTTTCGAGACAG  849

seq1  GGTTTCTCTGTATAG-CCCTGGCTGTCCTGGAACTCACTTTGTAGACCAG  899
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  GGTTTCTCTGTATAGCCCCTGGCTGT-CTGGAACTCACTTTGTAGACCAG  898

seq1  GCTGGTCT  907
      ||||||||
seq2  GCTGGTCT  906

seq1: chr9_109943687_109944634
seq2: B6Ng01-076D11.g_73_1011 (reverse)

seq1  AATAGGTTACAAAGTTGAACTGAGTTTAAGATGAATTTCTCTTAAGATTT  50
      |||||||| ||||||||||| |||||||||||||||||||| ||||||| 
seq2  AATAGGTT-CAAAGTTGAACGGAGTTTAAGATGAATTTCTCATAAGATTA  49

seq1  AGAGATTAATCATGTGTGTGCTCTCCCCCTCCCCATACACATTTAGTCAT  100
      || || |||||| ||| | | |||||||||||||  ||||||||||||||
seq2  AG-GA-TAATCA-GTGGGAG-TCTCCCCCTCCCCCAACACATTTAGTCAT  95

seq1  ACCTTCCTTGAACCAAACTTTGAAATTCTTTCCTTGCATTTGAAAATTTT  150
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  ACCTTCCTTGAACCAAACTTTGAAATTCTTTCC-TGCA-TTGAAAATTTT  143

seq1  TGCAGCCAGCAAATGGTTCTTTAACAAGTTTGCATGATCCAGCTACTACC  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCAGCCAGCAAATGGTTCTTTAACAAG-TTGCATGATCCAGCTACTACC  192

seq1  TTGAGAAAGTTAAACAAAACAAAAACACTGGTCGTTTAGAGCCAAGCAAT  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAG-TAAACAAAACAAAAACACTGGTCGTTTAGAGCCAAGCAAT  241

seq1  GTGGCTTCATCGTCGGGCTGTGCTCTGCATGGTGTGGACTTGCCCTCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCATCGTCGGGCTGTGCTCTGCATGGTGTGGACTTGCCCTCGTG  291

seq1  GGGGAAGCTGGTGCTATGCATGAGTGAGCACCTGGAGTGGAATACCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGCTGGTGCTATGCATGAGTGAGCACCTGGAGTGGAATACCTGTG  341

seq1  GTGTGAGGAAAGGATGCATATGCTATTTTCATCTTTCTGCTTTTTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGAAAGGATGCATATGCTATTTTCATCTTTCTGCTTTTTTCTTC  391

seq1  TCAGCTCCTCTATTAACAATTTGGGAAATTTAATAGAATAAGTAGCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTCTATTAACAATTTGGGAAATTTAATAGAATAAGTAGCATGT  441

seq1  AGAAAGCATTCCAGAATCCTACCATATTATTTAGTTTTGACAGTGATTAA  500
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAAAGCATTCCAGAATCCTCCCATATTATTTAGTTTTGACAGTGATTAA  491

seq1  AAGGTAACAGGCAGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCGCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAACAGGCAGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCGCCGA  541

seq1  CTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAGCCACATAGTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAGCCACATAGTGGCT  591

seq1  CACAACTATCTGTAACAAAATCTGATGCCCTCTTCTGGAGTATCTGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTATCTGTAACAAAATCTGATGCCCTCTTCTGGAGTATCTGAGGA  641

seq1  CAGCTACAGTGTATATAATAAATAAATAAATCAAAAAAAAAAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAGTGTATATAATAAATAAATAAATCAAAAAAAAAAAAAAAAAA  691

seq1  AAAAAGGTAACAGGTAAATTTTGTAAGTCCCTTGTCAGGATTTCCAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTAACAGGTAAATTTTGTAAGTCCCTTGTCAGGATTTCCAAAGA  741

seq1  AATGTTTAGTGTTTGCAAAGAATTCTAGAAAGTAGGTTTATTTTTAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAGTGTTTGCAAAGAATTCTAGAAAGTAGGTTTATTTTTAGTCA  791

seq1  GAACCTGCAGAGCTCTCTGGACCCTGCCAGGTCAGCCCCAGCTCAGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGCAGAGCTCTCTGGACCCTGCCAGGTCAGCCCCAGCTCAGTGTG  841

seq1  TATGTACTAGGGAATGTCCTTGCAAAGGACATGTGAGACGTGACCTGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTAGGGAATGTCCTTGCAAAGGACATGTGAGACGTGACCTGAGG  891

seq1  TGAGTGTAATGAGGACTAAGTAAAATTCATTGCTGCATCTCTGAATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTAATGAGGACTAAGTAAAATTCATTGCTGCATCTCTGAATTC  939