BAC Information

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BAC

Clone NameB6Ng01-076D16
Chromosome9 (Build37)
Map Location 60,966,098 - 61,007,873
singlet/doubletdoublet
Overlap genenone
Upstream geneThsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
Downstream geneLOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5, Glce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076D16.bB6Ng01-076D16.g
ACCDH892554DH892555
length1,148809
definitionDH892554|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D16, 5' end.DH892555|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,006,725 - 61,007,873)(60,966,098 - 60,966,904)
sequence
gaattcactggcagaggttattatagtgagggttctggagaggcgacatc
tgttgaagtttaaggaggcattctgtgggtcccaccaccaacccacggca
ctacagccttggctctccttagcacttggtcctgcctgcacagggagggg
caggacgccaatggcggtagaagcggcaggtctctgagctctgcttttct
ccagagaacttaatgacactctgctgaccgcaccggctgtgggccaggcc
catggccagagaccgctgaggctgtggtctaatttctgccaaggtcaact
ccattctgtctaactttaggagtgtatggttggcttcccaagcatcaaag
aagtcaaagtatccgactccagagtgtgtgtatttttaaagcaacgagaa
cagcaacaaaatcaaaacaaaaccagagagaaagagaacaacgccaagaa
aatccaaggatggttcagtgtccaacagactcagctcccagcgccctgga
cttgttgcaaatacccagtgactgtgggcaaacggaattaaatacatcga
ctcagttttaaaaaaataaaaataaaaagacctctaattagtcctgccca
tcaaagccaagtgtttcctgcaaatctacatttcctaaaaaggtaggggg
tgggaggccctgctttttcaccagtgagtggcagaatgctccacagacag
cagcagcccttggggctctggagctgtgctgaattgtgtcccatgtaaac
actcagcaggctagaagatggaggctctggctggattcccctctgactag
ctgagtgaacttgagcaatgccctgactccctagtccctgctttctcttc
tttaaagatcaatagatatgaaggaagccagttggcaagaagttggagac
tcttcccagccagggctacatgtaaaggacagattagaacaggaaaagtc
tgggacaaacgagtgtgggagatggtgtgtactgtggaattgaccgttag
ggatcttcacgcactgaagttctaatcttgctccctctgccatcttctta
cacagagttgttctttcttctaatgaactgtgtgttttcattcactcttc
tggtgcaagagcacagatggcattctgggtgtcctcctgaaacccaga
gaattctgtgttatggttaagctggctggcaatgtgcctgccctggagtt
gaggaaatcaaggtgggagtttagtggctcataaaacctcagggcaaagt
gggacctagaactcagcccttctgtcttccgcactgaagccggggcatac
ttccaaggctcatgctcacaaggcaagtggtgtcaatggggtcaatgctg
tcaatggggtctctcattcggctgaaggcctgagatcattatgtgcataa
gttgctaatgaatgacattgtctttcctgtggttaagactcaaaatcagg
aagacattaggcaactggaaatcaaaaatataagagtttttttggtgagt
ctgagtcactcttcaggagaaggacatcaccctgtctgatgcaaacatgg
gcaaagtagtacccagctgcagctcgcaggtgccaccagcatgctggact
cccttgcccacctctccttgaagcccctgtgtactcatttccatttattt
gatagtactcggcacacaatgcagactccatctttgccaccctgtatccg
agtcttccttggagtagccgggctcatttcgtcccaggctggacaggagg
gagggcagtttaaacggagcgggtgggtgcaggcaggctcttggtcagcg
gtgagtgcgcaggcaaggagcagcttcaaagaactgcttccatttcactg
gggaggaacactgggctatttaatcccttgatgggtgagtaggggctatg
gggtgagtgtacatcattggccagggccagggtgtttaggatgcttcatt
ttacatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_61006725_61007873
seq2: B6Ng01-076D16.b_45_1192 (reverse)

seq1  TCTGGG--TCAGGAGGACA-CCAG-ATGGCATCTGTGGCTTCTTGCA-CA  45
      ||||||  ||||||||||| |||| ||| ||||||||   ||||||| ||
seq2  TCTGGGTTTCAGGAGGACACCCAGAATGCCATCTGTG--CTCTTGCACCA  48

seq1  G-AGAGTG-ATGGAAACACACAGTTCATTAGAAGAAAGAACACTTCTGTG  93
      | |||||| ||| |||||||||||||||||||||||||||||  ||||||
seq2  GAAGAGTGAATGAAAACACACAGTTCATTAGAAGAAAGAACAACTCTGTG  98

seq1  TAAGGAAGATGGCAGAGGGAGCAAGATTAG-ACTTCAGTGGCCGTGAGGA  142
      ||| |||||||||||||||||||||||||| |||||||||  ||||| ||
seq2  TAA-GAAGATGGCAGAGGGAGCAAGATTAGAACTTCAGTG--CGTGAAGA  145

seq1  TCCCTAACGGGTCATTTCCACAGTACACACCATCTCCCACACTCGTTTGT  192
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TCCCTAAC-GGTCAATTCCACAGTACACACCATCTCCCACACTCGTTTGT  194

seq1  CCCAGACTTTTCTTGTTCTAATCTGTCCTTTACATGTAGCCCTGGCTGGG  242
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTTTTCCTGTTCTAATCTGTCCTTTACATGTAGCCCTGGCTGGG  244

seq1  AAGGGTCTCCAACTTCTTGCCAACTGGCTTCCTTCATATCTATTGATCTT  292
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCTCCAACTTCTTGCCAACTGGCTTCCTTCATATCTATTGATCTT  294

seq1  TAAAAGAAGAGAAAGCAGGGACTAGGGAGTCAGGGCATTTGCTCAAGTTC  342
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  T-AAAGAAGAGAAAGCAGGGACTAGGGAGTCAGGGCA-TTGCTCAAGTTC  342

seq1  ACTCAGCTAGTCAGAGGGGAATCCAGCCAGAGCCTCCATCTTCTAGCCCT  392
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTCAGCTAGTCAGAGGGGAATCCAGCCAGAGCCTCCATCTTCTAG-CCT  391

seq1  GCTGAGTGTTTACATGGGACACAATTCAGCACAGCTCCAGAGCCCCAAGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTGTTTACATGGGACACAATTCAGCACAGCTCCAGAGCCCCAAGG  441

seq1  GCTGCTGCTGTCTGTGGAGCATTCTGCCACTCACTGGTGAAAAAGCAGGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGTCTGTGGAGCATTCTGCCACTCACTGGTGAAAAAGCAGGG  491

seq1  CCTCCCACCCCCTACCTTTTTAGGAAATGTAGATTTGCAGGAAACACTTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACCCCCTACCTTTTTAGGAAATGTAGATTTGCAGGAAACACTTG  541

seq1  GCTTTGATGGGCAGGACTAATTAGAGGTCTTTTTATTTTTATTTTTTTAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGATGGGCAGGACTAATTAGAGGTCTTTTTATTTTTATTTTTTTAA  591

seq1  AACTGAGTCGATGTATTTAATTCCGTTTGCCCACAGTCACTGGGTATTTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTCGATGTATTTAATTCCGTTTGCCCACAGTCACTGGGTATTTG  641

seq1  CAACAAGTCCAGGGCGCTGGGAGCTGAGTCTGTTGGACACTGAACCATCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTCCAGGGCGCTGGGAGCTGAGTCTGTTGGACACTGAACCATCC  691

seq1  TTGGATTTTCTTGGCGTTGTTCTCTTTCTCTCTGGTTTTGTTTTGATTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTTCTTGGCGTTGTTCTCTTTCTCTCTGGTTTTGTTTTGATTTT  741

seq1  GTTGCTGTTCTCGTTGCTTTAAAAATACACACACTCTGGAGTCGGATACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTCTCGTTGCTTTAAAAATACACACACTCTGGAGTCGGATACT  791

seq1  TTGACTTCTTTGATGCTTGGGAAGCCAACCATACACTCCTAAAGTTAGAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCTTTGATGCTTGGGAAGCCAACCATACACTCCTAAAGTTAGAC  841

seq1  AGAATGGAGTTGACCTTGGCAGAAATTAGACCACAGCCTCAGCGGTCTCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAGTTGACCTTGGCAGAAATTAGACCACAGCCTCAGCGGTCTCT  891

seq1  GGCCATGGGCCTGGCCCACAGCCGGTGCGGTCAGCAGAGTGTCATTAAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGGCCTGGCCCACAGCCGGTGCGGTCAGCAGAGTGTCATTAAGT  941

seq1  TCTCTGGAGAAAAGCAGAGCTCAGAGACCTGCCGCTTCTACCGCCATTGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAGAAAAGCAGAGCTCAGAGACCTGCCGCTTCTACCGCCATTGG  991

seq1  CGTCCTGCCCCTCCCTGTGCAGGCAGGACCAAGTGCTAAGGAGAGCCAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGCCCCTCCCTGTGCAGGCAGGACCAAGTGCTAAGGAGAGCCAAG  1041

seq1  GCTGTAGTGCCGTGGGTTGGTGGTGGGACCCACAGAATGCCTCCTTAAAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGTGCCGTGGGTTGGTGGTGGGACCCACAGAATGCCTCCTTAAAC  1091

seq1  TTCAACAGATGTCGCCTCTCCAGAACCCTCACTATAATAACCTCTGCCAG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAGATGTCGCCTCTCCAGAACCCTCACTATAATAACCTCTGCCAG  1141

seq1  TGAATTC  1149
      |||||||
seq2  TGAATTC  1148

seq1: chr9_60966098_60966904
seq2: B6Ng01-076D16.g_71_879

seq1  GAATTCTGTGTTATGGTTAAGCTGGCTGGCAATGTGCCTGCCCTGGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTTATGGTTAAGCTGGCTGGCAATGTGCCTGCCCTGGAGTT  50

seq1  GAGGAAATCAAGGTGGGAGTTTAGTGGCTCATAAAACCTCAGGGCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATCAAGGTGGGAGTTTAGTGGCTCATAAAACCTCAGGGCAAAGT  100

seq1  GGGACCTAGAACTCAGCCCTTCTGTCTTCCGCACTGAAGCCGGGGCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTAGAACTCAGCCCTTCTGTCTTCCGCACTGAAGCCGGGGCATAC  150

seq1  TTCCAAGGCTCATGCTCACAAGGCAAGTGGTGTCAATGGGGTCAATGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGCTCATGCTCACAAGGCAAGTGGTGTCAATGGGGTCAATGCTG  200

seq1  TCAATGGGGTCTCTCATTCGGCTGAAGGCCTGAGATCATTATGTGCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGGGTCTCTCATTCGGCTGAAGGCCTGAGATCATTATGTGCATAA  250

seq1  GTTGCTAATGAATGACATTGTCTTTCCTGTGGTTAAGACTCAAAATCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAATGAATGACATTGTCTTTCCTGTGGTTAAGACTCAAAATCAGG  300

seq1  AAGACATTAGGCAACTGGAAATCAAAAATATAAGAGTTTTTTTGGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTAGGCAACTGGAAATCAAAAATATAAGAGTTTTTTTGGTGAGT  350

seq1  CTGAGTCACTCTTCAGGAGAAGGACATCACCCTGTCTGATGCAAACATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCACTCTTCAGGAGAAGGACATCACCCTGTCTGATGCAAACATGG  400

seq1  GCAAAGTAGTACCCAGCTGCAGCTCGCAGGTGCCACCAGCATGCTGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTAGTACCCAGCTGCAGCTCGCAGGTGCCACCAGCATGCTGGACT  450

seq1  CCCTTGCCCACCTCTCCTTGAAGCCCCTGTGTACTCATTTCCATTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCCCACCTCTCCTTGAAGCCCCTGTGTACTCATTTCCATTTATTT  500

seq1  GATAGTACTCGGCACACAATGCAGACTCCATCTTTGCCACCCTGTATCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTACTCGGCACACAATGCAGACTCCATCTTTGCCACCCTGTATCCG  550

seq1  AGTCTTCCTTGGAGTAGCCGGGCTCATTTCGTCCCAGGCTGGACAGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCTTGGAGTAGCCGGGCTCATTTCGTCCCAGGCTGGACAGGAGG  600

seq1  GAGGGCAGTTTAAACGGAGCGGGTGGGTGCAGGCAGGCTCTTGGTCAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGTTTAAACGGAGCGGGTGGGTGCAGGCAGGCTCTTGGTCAGCG  650

seq1  GTGAGTGCGCAGGCAAGGAGCAGCTTCAAAGAACTGCTTCCA-TTCACTG  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGAGTGCGCAGGCAAGGAGCAGCTTCAAAGAACTGCTTCCATTTCACTG  700

seq1  GGGAGGAACACTGGGCTATTTAATCCCTTGATGGGTGAGTAGGGGCTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAACACTGGGCTATTTAATCCCTTGATGGGTGAGTAGGGGCTATG  750

seq1  GGGTGAGTGTACATCATTGGCCAGGGCCAGGGTGTTGAGGATGCCTCA-T  798
      |||||||||||||||||||||||||||||||||||| ||||||| ||| |
seq2  GGGTGAGTGTACATCATTGGCCAGGGCCAGGGTGTTTAGGATGCTTCATT  800

seq1  TTACATGAG  807
      |||||||||
seq2  TTACATGAG  809