BAC Information

Click to search

BAC

Clone NameB6Ng01-076J04
Chromosome9 (Build37)
Map Location 76,842,474 - 76,982,477
singlet/doubletdoublet
Overlap geneTinag, LOC436082, 2310046A06Rik
Upstream geneHmgcll1, Gfral, Hcrtr2, C530008M07Rik
Downstream gene5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076J04.bB6Ng01-076J04.g
ACCDH892804DH892805
length1,1081,152
definitionDH892804|Mus musculus domesticus DNA, BAC clone: B6Ng01-076J04, 5' end.DH892805|Mus musculus domesticus DNA, BAC clone: B6Ng01-076J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,981,361 - 76,982,477)(76,842,474 - 76,843,650)
sequence
gaattcaaagactcatccagaatgttcccttcctgaatgtggttcatgat
atgaactctcagtttgctgcatcattcctgtttgaaatcactgtttgata
ctatcagggtgatggactcttatccctcaggaaccataaactcaaataaa
cccttcatcacataagtcgctgtggtcatggtatctatctatctatctat
ctatctatctatctatctatctatctatctatttattaccacaatagaaa
tatagctgagaaaatcaagttttcattccacattcattttactgaaaact
gtcttgtactggtttccttactttggtcattaacatagtattgaaagtct
ccagactgaaagctggattcatctattacaatccattttttcctttactt
tgttctggcagtagctagtagtttcccaggttgaatggggtcttccttgg
ctgtgcagcagctgctctgcatggccacttgactttatttgaaatgatgt
gcctattgtcccccaggcataccatcagcaccctgtactatcctagttct
acagggattcttccagataaaattatcttggttttctcctatggttgtga
acatttgtatattagcaatcagtcagattatgcctccttttcagcaaagt
ttctctctgtaccctcaaaacaattgtttcccttttctttttattttttc
catttttattaggtatttagctcatttacatttccaatgctataccaaaa
gtcccccatacccacccacccccactcccctacccacccactcccccttt
ttggccctggcgttcccctgtactggggcaaataaagttttgcgtgtcca
tgggcctcttttttcattgatgggccgactaggccatcttcttgatacat
tatgcagctagagtcaagagctccggggtactggatagttcataatgttg
ttccacctatagggttgcagtttccttaacttcttgagtacttctcagat
cctccattgggagcctgtgatcaatcaatagctgatgtgagcatcacttc
tggtttgctagccgggatagctcaaagatacagctacatcttgggtcctt
taaataaa
gaattcaggagaggcgtcgaacttgggaatattgtttagttggatgtcag
ctttcatctggtgctgaaggccaaacggagtttagagagcactgaattca
ctgagaatgagtaagagaaaaaagagagcaaggccaaaggccagggttta
gcaactacagcagtgagaggcagaataagagggagaaaagaaacctggca
aacagcaacaagtatgggaatgtcaggacagggaatgaatgggtaagtgg
aaaatctgacaagaggttttaacaaggtagagataattgatagccttgaa
acaatcgggttttagacaagtaatggggattactttagatgataagcatg
agaaaagattaagtttaagagagaatgtagttaagtttaagaaagacttt
ggggaagatgttttgaggacaatgagtgctggcaaagcaagtattggagt
gagaaaattagaaaattgagaagaagtcaagaataaaggttcctcagcac
ttgagaaacaggagcaggcacatctctgactttgagctcagcatggtcta
cagagtgagttccaggacagccacgctacacataaaacaaacaagcaaac
aaaagctgtcttgaaaaaagcaaaacaaaaacaaaacaaaaaaattaaga
ttttgcttctaaaagttgagatctgaaacataagggcatttactcaagtg
aagtctaatcctaagaagaagagagaaaactccttaggaggtttccaagt
agttttaagggtgggggagatgctacaagagaaacttagggagaaggata
cagggtttctgtctgcaagataaaggcaacataggctggcagtaacatgt
gactccaggaaatgtgttctgatgacttcaaatttgtcagtgatatcgta
acccagttaccatttaagagcagacagtgcatccatgattttgagacttc
actcgaggatgggaaaacaaagagatgcaatatttaaaagcgattagcag
ttagcataagacatctcatgaattatcatcataaattgatataaagtaaa
ggtaacatagtttcaagattttttatttttttggcagatattacagtgat
cgcaagagaacgtgatgtatgatgattgttggttttatggagcaacttgc
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76981361_76982477
seq2: B6Ng01-076J04.b_46_1153 (reverse)

seq1  TTTATTGAAAGGACCC-AGATGTAGCTGTCTCTTGTGAGACTATGCCGGG  49
      |||||| ||||||||| |||||||||||| |||| |||| |||| |||| 
seq2  TTTATTTAAAGGACCCAAGATGTAGCTGTATCTT-TGAG-CTATCCCGG-  47

seq1  GCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCA  99
        ||||||||| ||||||| |||||||||| |||||| || ||| |||||
seq2  --CTAGCAAAC-CAGAAGT-GATGCTCACA-TCAGCT-ATTGATTGATCA  91

seq1  CAGGGCTCCCAATGGAGGATCTAGAGAAAGTACCCAAGGAGCTAAAGGGA  149
      || ||||||||||||||||||| ||| |||||| |||| || | |||| |
seq2  CA-GGCTCCCAATGGAGGATCT-GAG-AAGTACTCAAGAAG-TTAAGGAA  137

seq1  ACTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGA  199
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTGCAACCCTATAGGTGGAACAACATTATGAACTATCCAGTACCCCGGA  187

seq1  GCTCTTGACTCTAGCTGCAT-ATGTATCAA-AAGATGGCCTAGTCGG-CC  246
      |||||||||||||||||||| ||||||||| |||||||||||||||| ||
seq2  GCTCTTGACTCTAGCTGCATAATGTATCAAGAAGATGGCCTAGTCGGCCC  237

seq1  ATCACTGAAAAAAGAGGCCCATTGGACACGC-AAACTTTATATGCCCCAG  295
      |||| |||||||||||||||| ||||||||| ||||||||| ||||||||
seq2  ATCAATGAAAAAAGAGGCCCA-TGGACACGCAAAACTTTATTTGCCCCAG  286

seq1  TACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTG  336

seq1  GGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATG  386

seq1  AGCTAAATACCTAATAAAAATGGAAAAAATAAAAAGAAAAGGGAAACAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATACCTAATAAAAATGGAAAAAATAAAAAGAAAAGGGAAACAAT  436

seq1  TGTTTTGAGGGTACAGAGAGAAACTTTGCTGAAAAGGAGGCATAATCTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAGGGTACAGAGAGAAACTTTGCTGAAAAGGAGGCATAATCTGA  486

seq1  CTGATTGCTAATATACAAATGTTCACAACCATAGGAGAAAACCAAGATAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGCTAATATACAAATGTTCACAACCATAGGAGAAAACCAAGATAA  536

seq1  TTTTATCTGGAAGAATCCCTGTAGAACTAGGATAGTACAGGGTGCTGATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTGGAAGAATCCCTGTAGAACTAGGATAGTACAGGGTGCTGATG  586

seq1  GTATGCCTGGGGGACAATAGGCACATCATTTCAAATAAAGTCAAGTGGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCTGGGGGACAATAGGCACATCATTTCAAATAAAGTCAAGTGGCC  636

seq1  ATGCAGAGCAGCTGCTGCACAGCCAAGGAAGACCCCATTCAACCTGGGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGCAGCTGCTGCACAGCCAAGGAAGACCCCATTCAACCTGGGAA  686

seq1  ACTACTAGCTACTGCCAGAACAAAGTAAAGGAAAAAATGGATTGTAATAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAGCTACTGCCAGAACAAAGTAAAGGAAAAAATGGATTGTAATAG  736

seq1  ATGAATCCAGCTTTCAGTCTGGAGACTTTCAATACTATGTTAATGACCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCCAGCTTTCAGTCTGGAGACTTTCAATACTATGTTAATGACCAA  786

seq1  AGTAAGGAAACCAGTACAAGACAGTTTTCAGTAAAATGAATGTGGAATGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGAAACCAGTACAAGACAGTTTTCAGTAAAATGAATGTGGAATGA  836

seq1  AAACTTGATTTTCTCAGCTATATTTCTATTGTGGTAATAAATAGATAGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGATTTTCTCAGCTATATTTCTATTGTGGTAATAAATAGATAGAT  886

seq1  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACCATGACCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACCATGACCA  936

seq1  CAGCGACTTATGTGATGAAGGGTTTATTTGAGTTTATGGTTCCTGAGGGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGACTTATGTGATGAAGGGTTTATTTGAGTTTATGGTTCCTGAGGGA  986

seq1  TAAGAGTCCATCACCCTGATAGTATCAAACAGTGATTTCAAACAGGAATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCCATCACCCTGATAGTATCAAACAGTGATTTCAAACAGGAATG  1036

seq1  ATGCAGCAAACTGAGAGTTCATATCATGAACCACATTCAGGAAGGGAACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCAAACTGAGAGTTCATATCATGAACCACATTCAGGAAGGGAACA  1086

seq1  TTCTGGATGAGTCTTTGAATTC  1117
      ||||||||||||||||||||||
seq2  TTCTGGATGAGTCTTTGAATTC  1108

seq1: chr9_76842474_76843650
seq2: B6Ng01-076J04.g_68_1219

seq1  GAATTCAGGAGAGGCGTCGAACTTGGGAATATTGTTTAGTTGGATGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGAGGCGTCGAACTTGGGAATATTGTTTAGTTGGATGTCAG  50

seq1  CTTTCATCTGGTGCTGAAGGCCAAACGGAGTTTAGAGAGCACTGAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTGGTGCTGAAGGCCAAACGGAGTTTAGAGAGCACTGAATTCA  100

seq1  CTGAGAATGAGTAAGAGAAAAAAGAGAGCAAGGCCAAAGGCCAGGGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATGAGTAAGAGAAAAAAGAGAGCAAGGCCAAAGGCCAGGGTTTA  150

seq1  GCAACTACAGCAGTGAGAGGCAGAATAAGAGGGAGAAAAGAAACCTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTACAGCAGTGAGAGGCAGAATAAGAGGGAGAAAAGAAACCTGGCA  200

seq1  AACAGCAACAAGTATGGGAATGTCAGGACAGGGAATGAATGGGTAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAACAAGTATGGGAATGTCAGGACAGGGAATGAATGGGTAAGTGG  250

seq1  AAAATCTGACAAGAGGTTTTAACAAGGTAGAGATAATTGATAGCCTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGACAAGAGGTTTTAACAAGGTAGAGATAATTGATAGCCTTGAA  300

seq1  ACAATCGGGTTTTAGACAAGTAATGGGGATTACTTTAGATGATAAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCGGGTTTTAGACAAGTAATGGGGATTACTTTAGATGATAAGCATG  350

seq1  AGAAAAGATTAAGTTTAAGAGAGAATGTAGTTAAGTTTAAGAAAGACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGATTAAGTTTAAGAGAGAATGTAGTTAAGTTTAAGAAAGACTTT  400

seq1  GGGGAAGATGTTTTGAGGACAATGAGTGCTGGCAAAGCAAGTATTGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGATGTTTTGAGGACAATGAGTGCTGGCAAAGCAAGTATTGGAGT  450

seq1  GAGAAAATTAGAAAATTGAGAAGAAGTCAAGAATAAAGGTTCCTCAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATTAGAAAATTGAGAAGAAGTCAAGAATAAAGGTTCCTCAGCAC  500

seq1  TTGAGAAACAGGAGCAGGCACATCTCTGACTTTGAGCTCAGCATGGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAACAGGAGCAGGCACATCTCTGACTTTGAGCTCAGCATGGTCTA  550

seq1  CAGAGTGAGTTCCAGGACAGCCACGCTACACATAAAACAAACAAGCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGTTCCAGGACAGCCACGCTACACATAAAACAAACAAGCAAAC  600

seq1  AAAAGCTGTCTTGAAAAAAGCAAAACAAAAACAAAACAAAAAAATTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGTCTTGAAAAAAGCAAAACAAAAACAAAACAAAAAAATTAAGA  650

seq1  TTTTGCTTCTAAAAGTTGAGATCTGAAACATAAGGGCATTTACTCAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTCTAAAAGTTGAGATCTGAAACATAAGGGCATTTACTCAAGTG  700

seq1  AAGTCTAATCCTAAGAAGAAAGAGAGAAAACTCCTTAGGAGGTTTCCAAG  750
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGTCTAATCCTAAGAAG-AAGAGAGAAAACTCCTTAGGAGGTTTCCAAG  749

seq1  TAGTTTTAAGGGTGGGGGAGATGCTACAAGAGAAACTTAGGGAGAAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTAAGGGTGGGGGAGATGCTACAAGAGAAACTTAGGGAGAAGGAT  799

seq1  ACAGGGTTTCTGTCTGCAAGATAAAGGCAACATAGGCTGGCAGTAACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTGTCTGCAAGATAAAGGCAACATAGGCTGGCAGTAACATG  849

seq1  TGACTCCAGGAAATGTGTTCTGATGACTTCAAATTTGTCAGTGATATCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCAGGAAATGTGTTCTGATGACTTCAAATTTGTCAGTGATATCGT  899

seq1  AACCCAGTTACCATTTAAGAGCAGGACAGTGCATCCATGATTTTGAGACT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACCCAGTTACCATTTAAGAGCA-GACAGTGCATCCATGATTTTGAGACT  948

seq1  TCAACTCGAAGAATGGGAAAACAAAGAGAATGC-ATATTTAAAAGGCGAT  999
      || ||||| || |||||||||||||||| |||| |||||||||| |||||
seq2  TC-ACTCG-AGGATGGGAAAACAAAGAG-ATGCAATATTTAAAA-GCGAT  994

seq1  TAGCCAGTAGCATAAGACATCTCATGGAAATTTATCATCATAAAATGATA  1049
      ||||   |||||||||||||||||||   | ||||||||||||| |||||
seq2  TAGCAGTTAGCATAAGACATCTCATG---AATTATCATCATAAATTGATA  1041

seq1  TAAAAGTAAAGTTAACATAGTTTTCACAGATATTTTAATTTTTTTTGGCA  1099
      | ||||||||| |||||||| ||||| |||| |||||  |||||||||||
seq2  T-AAAGTAAAGGTAACATAG-TTTCA-AGATTTTTTA--TTTTTTTGGCA  1086

seq1  GGATTATACAGTGATTCGGGCAAAGAAGAAGAGTGAAGGGTATGATGATT  1149
       |||  |||||||||    ||||   ||||  ||||   |||||||||||
seq2  -GATATTACAGTGAT---CGCAA--GAGAA-CGTGA--TGTATGATGATT  1127

seq1  GTTGGTTTTAATGGATGCCAACTTGCCA  1177
      ||||||||| |||||   ||||||||||
seq2  GTTGGTTTT-ATGGA--GCAACTTGCCA  1152