BAC Information

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BAC

Clone NameB6Ng01-076L12
Chromosome9 (Build37)
Map Location 9,200,903 - 9,377,375
singlet/doubletdoublet
Overlap gene9030420J04Rik
Upstream gene1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5, LOC665154, LOC100039970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076L12.bB6Ng01-076L12.g
ACCDH892900DH892901
length1,090876
definitionDH892900|Mus musculus domesticus DNA, BAC clone: B6Ng01-076L12, 5' end.DH892901|Mus musculus domesticus DNA, BAC clone: B6Ng01-076L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,376,265 - 9,377,375)(9,200,903 - 9,201,774)
sequence
gaattcatctctcagatattaccccagtggctgagatagattttggtctc
tgatctccctgacatcttcagacccttcacaaaagatgggctgggggcca
ctggatatcattgtccctcttcccaacaatgaataaatcttcattttctc
agtggcatgtggaggatgggtgagcaaacctgttttgttcgatctgctaa
gtccactaatgctctcaacctgagtatcatacacatgcagtgagatgatt
gggcttccaccaccctcagaaaatgtgtctagtaaatcatctcaactata
gccttctgtgtatttatacatgaccagttttatattttggatgcatacaa
ttaagatatgcttgcttgatacaggttcaggggctactgagtatctacaa
atctaatcaattcatagatgtccttaggttcaagactatatcctgtatat
gaatatttttgaatcaatttataaaaataaggtcagagacagaaaaatac
acttgtgactgcattttttggtacaacagtgacatcttgtgggaaaaact
tagtgtgtctaaatggttctgagtacttcaaaagtagcttttctcttcag
gaagtgagaactggattgaatttgagattcaaatttgaatttgagaccat
tgacatacagatcaccctctatgactttaatatcgcacatcatcttttta
ataaaatagcaaaatgtttcagaattgtgcattagctgatgttgaaggaa
gagagatttttcctgcagctgtttaagtcagtgaaatctgagaaaaggat
tgtctctgattttagaggggagaagggtggttctgtctgagagtgctctg
tgataatttactttggaaagcacgtaaaaagtacttgtcttctacataca
cccgctcaacacaaactcaaaccccacaccccccccccccaccccccccc
caggatatcttccaaggctgaatgactatggctcattgagtctgtagcaa
gtactactgagccagccagttggacaaagcctcgtgaaaccttactgttt
tgcttcaataaagacagccagcctggcctagctggctagg

gaattccatttaaaaaataactatcctgcctccggacacatctcccacag
aaatattttcacatagccaccacctctctaggtaaacggtggctggaaca
taggtcgggtgctttgggcagctgtgtgctcgggtggggcatgaaaggaa
tgaatgtggttatcaaggcgtttctgagtaaggagcccttggaaggagat
gacagtgaggggtcatgggaaaagaagttcccttcaccccacttcctggc
cgcattcacagtgtacaggccatcagcaactgatgtttaccaaagggaac
tgaagaggggactctctgggtgggggagaaacatcgaagaccacagatag
atacagagcttacgcttataacattatactgggctctctgggtgggggag
ggacaatgaagcccacagatacagggcttactctttattacattacactt
taaaaatgctagacatggtttgcaggctttagcacatttcaccacaccaa
acagttaatccctacagctttgataaatccagataaatcaagaaattctt
cagttaatcacacaaataaaattcaatgaagagaaaagacaatgttcatt
gtatcctttttagaacaatatgtttgcaatctgaggttactttcagtgtc
ctaaaaaagaaatattttcaggattgcaaattaagagctgaaggggtctg
tagcaggaacaacaatatgaactaaccagtacccccagagctcgtgtctc
tagctgcatatgcagcagaggatggccttgttggccatcattgggaggac
aggcctttggttcttgtgaagatctatgcccctgttataaggggaatgca
ggcccaggaagtgggaagtgggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9376265_9377375
seq2: B6Ng01-076L12.b_46_1135 (reverse)

seq1  CCTAGCCAGCTAGG-CAGGCTGGCCGTCCTTACTGAAGCAAAACAGTACA  49
      |||||||||||||| ||||||||| ||| ||| ||||||||||||||| |
seq2  CCTAGCCAGCTAGGCCAGGCTGGCTGTCTTTATTGAAGCAAAACAGTA-A  49

seq1  GCTTTCACGAGGCTTTGTCCAACTTGCGTGCTCAGTAAGTACCTATGCTA  99
      | |||||||||||||||||||||| ||  ||||||| |||||   |||||
seq2  GGTTTCACGAGGCTTTGTCCAACTGGCTGGCTCAGT-AGTAC--TTGCTA  96

seq1  CAGACTCCAATGAGCCATAGTCATTTCAGCCTTTGGAAAGATATCCTGGT  149
      |||||| |||||||||||||||| |||||||||  | |||||||||||| 
seq2  CAGACT-CAATGAGCCATAGTCA-TTCAGCCTT--GGAAGATATCCTGGG  142

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGT  199
      | | | |||               | | | | | ||||| | ||||| ||
seq2  GGGGGGGTG---------------GGGGGGGGGGGTGTG-GGGTTTGAGT  176

seq1  TTGTGTTTGAGC-GGTGTATGTAGAAGACAAGTACTTTTTACGTGCTTT-  247
      ||||| |||||| |||||||||||||||||||||||||||||||||||| 
seq2  TTGTG-TTGAGCGGGTGTATGTAGAAGACAAGTACTTTTTACGTGCTTTC  225

seq1  CAAAGTAAATTATCACAGAGCACTCTCAGACAGAACCACCCTTCTCCCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAATTATCACAGAGCACTCTCAGACAGAACCACCCTTCTCCCCT  275

seq1  CTAAAATCAGAGACAATCCTTTTCTCAGATTTCACTGACTTAAACAGCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCAGAGACAATCCTTTTCTCAGATTTCACTGACTTAAACAGCTG  325

seq1  CAGGAAAAATCTCTCTTCCTTCAACATCAGCTAATGCACAATTCTGAAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAATCTCTCTTCCTTCAACATCAGCTAATGCACAATTCTGAAAC  375

seq1  ATTTTGCTATTTTATT-AAAAGATGATGTGCGATATTAAAGTCATAGAGG  446
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTTGCTATTTTATTAAAAAGATGATGTGCGATATTAAAGTCATAGAGG  425

seq1  GTGATCTGTATGTCAATGGTCTCAAATTCAAATTTGAATCTCAAATTCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGTATGTCAATGGTCTCAAATTCAAATTTGAATCTCAAATTCAA  475

seq1  TCCAGTTCTCACTTCCTGAAGAGAAAAGCTACTTTTGAAGTACTCAGAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCTCACTTCCTGAAGAGAAAAGCTACTTTTGAAGTACTCAGAAC  525

seq1  CATTTAGACACACTAAGTTTTTCCCACAAGATGTCACTGTTGTACCAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGACACACTAAGTTTTTCCCACAAGATGTCACTGTTGTACCAAAA  575

seq1  AATGCAGTCACAAGTGTATTTTTCTGTCTCTGACCTTATTTTTATAAATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTCACAAGTGTATTTTTCTGTCTCTGACCTTATTTTTATAAATT  625

seq1  GATTCAAAAATATTCATATACAGGATATAGTCTTGAACCTAAGGACATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAAAATATTCATATACAGGATATAGTCTTGAACCTAAGGACATCT  675

seq1  ATGAATTGATTAGATTTGTAGATACTCAGTAGCCCCTGAACCTGTATCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGATTAGATTTGTAGATACTCAGTAGCCCCTGAACCTGTATCAA  725

seq1  GCAAGCATATCTTAATTGTATGCATCCAAAATATAAAACTGGTCATGTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATATCTTAATTGTATGCATCCAAAATATAAAACTGGTCATGTAT  775

seq1  AAATACACAGAAGGCTATAGTTGAGATGATTTACTAGACACATTTTCTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACAGAAGGCTATAGTTGAGATGATTTACTAGACACATTTTCTGA  825

seq1  GGGTGGTGGAAGCCCAATCATCTCACTGCATGTGTATGATACTCAGGTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTGGAAGCCCAATCATCTCACTGCATGTGTATGATACTCAGGTTG  875

seq1  AGAGCATTAGTGGACTTAGCAGATCGAACAAAACAGGTTTGCTCACCCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTAGTGGACTTAGCAGATCGAACAAAACAGGTTTGCTCACCCAT  925

seq1  CCTCCACATGCCACTGAGAAAATGAAGATTTATTCATTGTTGGGAAGAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACATGCCACTGAGAAAATGAAGATTTATTCATTGTTGGGAAGAGG  975

seq1  GACAATGATATCCAGTGGCCCCCAGCCCATCTTTTGTGAAGGGTCTGAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGATATCCAGTGGCCCCCAGCCCATCTTTTGTGAAGGGTCTGAAG  1025

seq1  ATGTCAGGGAGATCAGAGACCAAAATCTATCTCAGCCACTGGGGTAATAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGGAGATCAGAGACCAAAATCTATCTCAGCCACTGGGGTAATAT  1075

seq1  CTGAGAGATGAATTC  1111
      |||||||||||||||
seq2  CTGAGAGATGAATTC  1090


seq1: chr9_9200903_9201774
seq2: B6Ng01-076L12.g_66_941

seq1  GAATTCCATTTAAAAAATAACTATCCTGCCTCCGGACACATCTCCCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAAAAAATAACTATCCTGCCTCCGGACACATCTCCCACAG  50

seq1  AAATATTTTCACATAGCCACCACCTCTCTAGGTAAACGGTGGCTGGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTCACATAGCCACCACCTCTCTAGGTAAACGGTGGCTGGAACA  100

seq1  TAGGTCGGGTGCTTTGGGCAGCTGTGTGCTCGGGTGGGGCATGAAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCGGGTGCTTTGGGCAGCTGTGTGCTCGGGTGGGGCATGAAAGGAA  150

seq1  TGAATGTGGTTATCAAGGCGTTTCTGAGTAAGGAGCCCTTGGAAGGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGGTTATCAAGGCGTTTCTGAGTAAGGAGCCCTTGGAAGGAGAT  200

seq1  GACAGTGAGGGGTCATGGGAAAAGAAGTTCCCTTCACCCCACTTCCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGAGGGGTCATGGGAAAAGAAGTTCCCTTCACCCCACTTCCTGGC  250

seq1  CGCATTCACAGTGTACAGGCCATCAGCAACTGATGTTTACCAAAGGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTCACAGTGTACAGGCCATCAGCAACTGATGTTTACCAAAGGGAAC  300

seq1  TGAAGAGGGGACTCTCTGGGTGGGGGAGAAACATCGAAGACCACAGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGGGACTCTCTGGGTGGGGGAGAAACATCGAAGACCACAGATAG  350

seq1  ATACAGAGCTTACGCTTATAACATTATACTGGGCTCTCTGGGTGGGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGCTTACGCTTATAACATTATACTGGGCTCTCTGGGTGGGGGAG  400

seq1  GGACAATGAAGCCCACAGATACAGGGCTTACTCTTTATTACATTACACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATGAAGCCCACAGATACAGGGCTTACTCTTTATTACATTACACTT  450

seq1  TAAAAATGCTAGACATGGTTTGCAGGCTTTAGCACATTTCACCACACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGCTAGACATGGTTTGCAGGCTTTAGCACATTTCACCACACCAA  500

seq1  ACAGTTAATCCCTACAGCTTTGATAAATCCAGATAAATCAAGAAATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAATCCCTACAGCTTTGATAAATCCAGATAAATCAAGAAATTCTT  550

seq1  CAGTTAATCACACAAATAAAATTCAATGAAGAGAAAAGACAATGTTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATCACACAAATAAAATTCAATGAAGAGAAAAGACAATGTTCATT  600

seq1  GTATCCTTTTTAGAACAATATGTTTGCAATCTGAGGTTACTTTCAGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTTTTAGAACAATATGTTTGCAATCTGAGGTTACTTTCAGTGTC  650

seq1  CT-AAAAAGAAATA-TTTCAGGATTGCAAATTAAGAGCTGAAGGGGTCTG  698
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAGAAATATTTTCAGGATTGCAAATTAAGAGCTGAAGGGGTCTG  700

seq1  TAGCAGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTC  750

seq1  TAGCTGCATATGCAGCAGAGGATGGCCTTGTTGGCCATCAATGGGAGGAC  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGCTGCATATGCAGCAGAGGATGGCCTTGTTGGCCATCATTGGGAGGAC  800

seq1  AGGCCTTTGG-TCTTGTGAAGATTCTATGCCCCAG-TAT-AGGGGAATGC  845
      |||||||||| ||||||||||| |||||||||| | ||| ||||||||| 
seq2  AGGCCTTTGGTTCTTGTGAAGA-TCTATGCCCCTGTTATAAGGGGAATG-  848

seq1  CAGGGCCAGGAAGTGGG-AGTGGGTGGG  872
      |||| |||||||||||| ||||||||||
seq2  CAGGCCCAGGAAGTGGGAAGTGGGTGGG  876


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